genome.fa.s9303.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009303.1 Hibiscus syriacus cultivar Beakdansim tig00113027_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127255

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325--432	34	3.1	34	90	5	155	42	20	4	32	1.72
1895--1933	20	1.9	21	89	5	62	17	7	0	74	1.05
5119--5243	65	1.9	65	90	6	200	40	12	22	25	1.88
5254--5299	21	2.2	21	100	0	92	13	34	15	36	1.86
5571--5754	91	2.0	91	89	0	278	38	8	14	38	1.77
13095--13148	27	2.0	28	85	10	76	50	12	14	22	1.77
14162--14245	35	2.4	36	81	2	98	28	17	21	32	1.96
15332--15429	48	2.0	48	94	0	169	23	27	13	35	1.92
18706--18788	22	3.1	29	61	25	74	48	20	4	26	1.69
18700--18810	50	2.2	50	98	0	213	49	19	3	27	1.65
19716--19747	3	10.7	3	93	0	55	65	3	0	31	1.08
19875--19908	18	1.9	17	88	5	50	58	2	2	35	1.28
20420--20529	36	3.0	36	88	2	166	30	14	15	39	1.87
20424--20529	37	2.9	36	87	2	158	31	13	16	39	1.86
21106--21969	84	10.5	83	79	6	799	25	18	25	30	1.98
21061--21976	162	5.6	161	78	6	811	24	18	25	30	1.98
23204--23376	95	1.8	94	88	3	267	30	17	17	33	1.94
26148--26179	16	1.9	17	93	6	57	68	0	3	28	1.04
26157--26245	34	2.6	33	76	13	92	66	1	11	21	1.30
26342--26408	18	3.3	19	70	20	55	65	0	13	20	1.26
26436--26479	19	2.3	19	80	0	52	79	4	2	13	0.98
26881--26985	37	2.8	37	89	0	156	34	11	13	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27100--27137	16	2.3	17	95	4	69	18	2	39	39	1.65
35564--35629	15	4.4	15	84	0	96	37	4	18	39	1.71
35564--35646	30	2.8	30	87	3	105	40	6	16	36	1.74
35558--35646	45	2.0	45	88	0	133	42	5	17	33	1.73
35932--35994	23	2.7	23	85	5	72	47	0	1	50	1.10
35954--35994	12	3.4	12	81	18	50	46	0	0	53	1.00
35970--36081	20	5.6	20	67	16	63	48	1	0	50	1.11
35969--36127	59	2.7	59	75	14	150	47	1	0	50	1.13
36095--36138	22	2.0	23	86	4	63	54	0	0	45	0.99
36325--36440	41	2.8	42	89	2	180	45	18	17	18	1.85
53097--53145	21	2.3	21	96	0	89	26	4	38	30	1.75
62794--62842	21	2.1	21	82	14	53	57	8	0	34	1.29
62914--62954	13	3.4	12	78	21	50	56	17	0	26	1.41
65233--65325	41	2.3	41	90	0	141	29	15	20	35	1.93
65780--65819	16	2.5	16	87	0	53	32	2	25	40	1.69
80464--80502	19	2.1	19	85	0	51	46	7	0	46	1.31
81441--81511	29	2.4	29	79	4	90	49	2	2	45	1.31
82433--82470	19	2.0	20	85	10	53	55	0	0	44	0.99
84196--84325	69	1.9	69	100	0	260	29	10	23	37	1.87
86444--86515	34	2.1	34	87	7	103	45	11	13	29	1.78
87385--87416	2	16.0	2	100	0	64	50	0	0	50	1.00
91446--91475	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110647--110676	15	2.0	15	93	0	51	13	23	46	16	1.82
115612--115641	15	2.0	15	93	0	51	13	23	46	16	1.82
125520--125549	15	2.0	15	93	0	51	13	23	46	16	1.82

Tables:   1

The End!