Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009306.1 Hibiscus syriacus cultivar Beakdansim tig00113042_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82566

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1934--1965
2
16.5
2
93
6
57
50
0
0
50
1.00
2753--2809
15
3.9
15
78
17
57
52
1
1
43
1.21
2759--2809
7
7.0
7
77
22
52
52
1
1
43
1.23
3139--3204
29
2.3
27
82
14
87
37
7
12
42
1.71
3257--3317
19
3.2
19
92
0
95
40
8
11
39
1.71
3424--3463
21
1.9
21
94
0
71
25
15
32
27
1.95
4647--4694
19
2.5
20
82
3
62
52
6
12
29
1.63
5920--5979
29
2.0
31
90
6
97
35
6
16
41
1.75
6040--6104
19
3.5
19
89
4
87
41
9
10
38
1.72
6279--6318
20
1.9
21
85
10
55
37
35
10
17
1.83
6964--6999
15
2.4
15
90
0
54
41
2
0
55
1.14
7059--7089
2
15.5
2
100
0
62
48
0
0
51
1.00
17542--17609
23
3.0
23
82
0
82
17
25
26
30
1.97
23395--23438
4
10.5
4
85
9
61
50
20
0
29
1.49
24314--24375
26
2.3
26
75
2
61
50
1
8
40
1.42
25238--25311
36
2.1
36
92
0
121
27
16
22
33
1.95
30226--30308
29
2.8
29
92
1
139
43
9
14
32
1.78
34988--35070
29
2.8
29
92
1
139
43
9
14
32
1.78
40398--40534
72
1.9
72
88
4
206
45
2
2
48
1.32
42989--43547
278
2.0
278
98
0
1093
29
13
19
37
1.90
46616--46947
166
2.0
164
86
2
468
21
20
17
40
1.92
48272--48601
164
2.0
164
87
0
480
20
20
17
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52515--52541
13
2.1
13
100
0
54
62
0
14
22
1.31
52819--53135
164
1.9
164
84
2
422
21
19
18
40
1.91
59348--59669
163
2.0
164
89
0
502
21
21
17
40
1.92
60647--61928
650
1.9
656
87
3
1855
24
18
15
41
1.89
67447--67504
30
2.0
29
90
10
91
36
5
17
41
1.72
67569--67618
19
2.6
19
90
0
73
46
8
8
38
1.63
67582--67634
19
2.8
19
88
0
70
41
11
11
35
1.77
67740--67779
21
1.9
21
94
0
71
27
7
30
35
1.84
74094--74136
16
2.6
16
85
10
52
18
6
4
69
1.29
76546--76922
24
15.7
24
80
0
223
10
33
16
39
1.84
76544--76922
6
63.2
6
79
0
164
10
33
16
39
1.84
76546--76923
30
12.6
30
80
0
189
11
33
16
39
1.84
78298--78349
22
2.4
22
83
6
61
48
9
3
38
1.54

Tables:   1

The End!