genome.fa.s9307.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009307.1 Hibiscus syriacus cultivar Beakdansim tig00113043_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116140

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4296--4329	14	2.5	13	90	4	50	26	0	26	47	1.53
4297--4329	13	2.4	14	90	5	50	27	0	27	45	1.54
8116--8263	20	7.4	20	79	9	151	41	22	14	20	1.90
8116--8263	60	2.5	60	86	4	192	41	22	14	20	1.90
8133--8267	40	3.4	40	87	7	170	42	22	14	20	1.89
8653--8703	20	2.5	21	90	3	77	17	19	17	45	1.86
10327--10358	13	2.3	15	89	10	50	56	12	0	31	1.37
10506--10556	2	25.5	2	100	0	102	50	0	0	49	1.00
14795--14831	14	2.6	14	91	0	56	62	24	8	5	1.44
18662--18704	17	2.6	17	88	3	61	53	23	13	9	1.69
18771--18818	16	3.0	16	78	0	51	41	20	18	18	1.90
27352--27403	13	3.7	13	72	18	50	40	13	3	42	1.62
27344--27403	30	2.0	30	100	0	120	36	13	3	46	1.60
28509--28829	132	2.5	132	92	1	531	48	5	9	36	1.58
28803--28865	32	2.0	32	100	0	126	57	4	0	38	1.20
28963--29006	19	2.3	18	81	14	52	56	0	0	43	0.99
41857--41902	24	1.9	24	86	8	67	23	8	2	65	1.32
47397--47460	24	2.6	25	85	9	80	40	4	0	54	1.21
47397--47460	23	2.7	23	85	9	76	40	4	0	54	1.21
47402--47477	24	3.1	25	80	14	79	40	3	0	55	1.18
47715--47785	31	2.3	31	85	0	97	46	11	15	26	1.79
47981--48010	4	7.5	4	100	0	60	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49123--49255	65	2.0	66	97	1	250	26	18	15	40	1.89
56608--56668	32	1.9	32	93	0	104	37	16	22	22	1.93
58538--58571	3	11.3	3	100	0	68	64	0	0	35	0.94
60395--60434	20	2.0	20	95	0	71	12	25	20	42	1.86
60799--60862	26	2.5	26	84	0	92	51	12	17	18	1.76
62086--62137	26	2.0	26	100	0	104	50	11	3	34	1.57
66689--66764	35	2.2	35	92	0	125	39	23	1	35	1.63
67161--67408	130	1.9	130	90	0	397	36	15	12	35	1.86
67175--67439	130	2.0	129	80	4	291	40	13	13	32	1.84
67731--67793	28	2.3	27	78	8	63	46	1	3	49	1.27
67873--67906	16	2.0	18	88	11	54	64	5	2	26	1.30
73625--73686	28	2.2	28	82	2	70	22	11	11	54	1.67
76895--76934	21	1.9	21	90	10	64	45	27	2	25	1.66
77144--77186	13	3.2	13	78	18	52	41	0	0	58	0.98
80357--80383	7	3.9	7	100	0	54	25	0	0	74	0.83
82071--82195	49	2.7	49	92	6	206	19	12	22	46	1.82
83292--83348	14	4.0	14	73	13	53	61	0	3	35	1.13
85174--85256	29	2.8	29	92	1	139	43	9	14	32	1.78
89941--90023	29	2.8	29	92	1	139	43	9	14	32	1.78
92603--92663	31	2.0	31	93	0	104	21	8	18	52	1.71
98583--98845	81	3.2	81	86	0	364	20	31	17	31	1.95
100406--100435	14	2.1	14	93	0	51	3	30	10	56	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109484--109524	8	5.2	8	82	5	57	34	0	29	36	1.58
109592--110341	128	5.9	128	95	1	1336	23	24	18	33	1.97
109592--110341	255	3.0	255	95	2	1325	23	24	18	33	1.97
110597--110626	14	2.1	14	93	0	51	30	0	10	60	1.30
110741--110840	33	3.0	34	83	2	139	39	3	4	54	1.35
111354--111441	21	4.2	21	89	5	124	22	26	31	19	1.98
113219--113254	14	2.6	14	90	0	54	55	2	0	41	1.14

Tables:   1

The End!