genome.fa.s9308.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009308.1 Hibiscus syriacus cultivar Beakdansim tig00113044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  172755

Tables:   1   2   

This is table  1  of  2  ( 124 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4344--4426	29	2.8	29	92	1	139	43	9	14	32	1.78
7006--7066	31	2.0	31	93	0	104	21	8	18	52	1.71
13000--13262	81	3.2	81	86	0	364	20	31	17	31	1.95
14830--14859	14	2.1	14	93	0	51	3	30	10	56	1.48
23980--24020	8	5.2	8	82	5	57	34	0	29	36	1.58
24091--24846	128	5.9	128	97	0	1388	23	24	19	33	1.97
25102--25131	14	2.1	14	93	0	51	30	0	10	60	1.30
25247--25347	34	3.0	34	83	0	139	38	2	3	54	1.34
25866--25956	21	4.3	21	90	5	130	21	26	31	19	1.98
25963--26010	21	2.3	21	85	0	60	22	12	39	25	1.89
27749--27794	16	2.6	18	76	10	51	56	2	0	41	1.11
27731--27787	18	3.2	17	76	11	53	59	1	0	38	1.08
32429--32633	97	2.1	99	84	4	265	36	15	16	32	1.89
36458--36518	10	6.3	10	70	14	56	60	16	9	13	1.58
36475--36518	14	3.1	14	76	0	52	59	15	11	13	1.62
38098--38165	26	2.4	29	78	16	88	14	10	20	54	1.69
45519--45550	15	2.1	15	100	0	64	37	6	34	21	1.79
47337--47388	24	2.2	24	86	6	70	59	3	7	28	1.43
52017--52126	58	1.9	58	83	9	145	39	7	6	47	1.57
53182--53265	31	2.7	31	83	7	91	54	3	1	40	1.25
53186--53235	19	2.6	19	81	9	57	56	2	2	40	1.22
53738--53799	31	2.2	28	83	13	74	29	29	24	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55214--55287	20	3.7	20	85	0	103	43	16	18	21	1.88
55296--55341	21	2.2	21	92	0	74	50	15	10	23	1.75
55462--55528	21	3.3	20	70	8	64	32	26	17	22	1.96
55522--55635	40	2.8	38	82	6	111	26	15	24	33	1.95
55650--55695	19	2.4	19	85	3	56	21	17	30	30	1.96
55661--55697	19	1.9	19	94	0	65	21	16	29	32	1.95
56202--56317	21	5.6	21	69	10	60	32	27	18	21	1.96
56305--56533	40	5.7	40	87	2	239	36	25	17	19	1.94
56343--56533	20	9.6	20	86	4	233	35	25	17	21	1.95
57226--57272	24	2.0	24	87	8	69	25	14	21	38	1.92
57447--57471	12	2.1	12	100	0	50	72	0	28	0	0.86
59755--59934	33	5.2	33	87	9	261	47	18	21	12	1.82
59769--60006	53	4.5	52	85	12	315	47	17	21	13	1.82
59769--60006	72	3.4	72	81	12	291	47	17	21	13	1.82
59755--59953	105	1.9	105	94	2	355	47	18	21	13	1.82
59799--60011	86	2.4	88	88	9	310	46	16	23	13	1.83
59982--60097	53	2.2	52	84	3	151	19	23	18	37	1.94
60020--60107	19	4.8	19	82	14	123	13	22	15	47	1.81
60198--60234	14	2.6	14	91	0	65	45	21	0	32	1.52
61638--61698	21	2.9	21	72	0	68	21	18	36	24	1.95
62157--62329	19	9.6	19	76	12	150	45	23	20	10	1.82
62251--62307	14	3.7	14	75	20	51	43	22	22	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62232--62324	33	2.8	33	95	0	168	46	21	21	10	1.81
62191--62329	52	2.7	52	75	8	156	46	22	21	10	1.81
62341--62399	14	3.9	14	76	20	64	6	16	28	47	1.72
62325--62418	33	2.8	33	93	0	161	7	17	27	47	1.74
62325--62434	19	6.3	18	73	20	92	9	16	28	46	1.77
62532--62847	93	3.4	93	99	0	623	45	18	13	22	1.85
64534--64597	20	3.2	20	82	4	92	46	15	25	12	1.81
64532--64596	21	3.1	21	82	4	96	47	15	26	10	1.78
64621--64684	21	3.0	20	79	6	74	17	18	15	48	1.81
64764--64834	33	2.2	33	92	0	115	49	16	22	11	1.78
65214--65406	20	9.6	20	85	5	246	18	19	27	34	1.95
65965--66088	65	1.9	64	83	6	162	30	8	12	48	1.70
68584--68619	15	2.3	17	86	13	51	58	2	0	38	1.13
69191--69241	26	2.0	26	88	0	75	60	0	5	33	1.21
70423--70471	18	2.7	19	81	15	59	67	2	6	24	1.24
71225--71259	12	3.0	12	91	4	54	65	5	2	25	1.28
72193--72251	31	1.9	31	92	0	100	44	0	8	47	1.33
72275--72507	22	10.6	22	87	1	324	48	10	0	40	1.38
72275--72584	44	7.3	43	82	9	361	50	10	0	39	1.37
72275--72584	66	4.9	65	81	10	345	50	10	0	39	1.37
72455--72562	55	2.0	55	92	0	180	53	9	0	37	1.33
72510--72584	22	3.4	22	98	0	141	53	10	0	36	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72433--72584	77	2.0	77	90	0	241	53	8	0	38	1.32
72571--72610	12	3.6	12	77	16	50	52	0	2	45	1.14
72389--72608	121	1.8	120	88	4	336	51	9	0	39	1.37
72412--72601	99	1.9	99	92	1	317	52	8	0	38	1.36
72428--72610	77	2.4	76	77	9	208	51	7	0	40	1.33
78624--78677	17	2.9	19	71	20	60	7	14	25	51	1.68
84731--84789	30	1.9	31	86	10	86	37	8	13	40	1.75
89715--90709	4	247.2	4	92	1	1360	25	6	24	43	1.78
89987--90013	14	1.9	14	100	0	54	29	25	22	22	1.99
91117--91177	30	2.1	30	90	3	97	42	4	0	52	1.23
94707--94766	31	1.9	32	83	10	79	45	3	1	50	1.28
100260--100332	31	2.4	31	88	0	101	50	9	9	30	1.67
103316--103343	13	2.2	13	100	0	56	32	25	0	42	1.55
106721--106787	31	2.2	31	88	0	98	26	20	26	25	1.99
107485--107530	7	6.7	7	80	11	51	60	0	0	39	0.97
108574--108727	60	2.6	60	73	6	152	31	24	5	38	1.77
109847--109947	31	3.3	31	69	15	93	37	5	23	32	1.79
109820--109951	60	2.2	60	89	2	194	38	5	24	31	1.78
109885--110028	77	1.9	77	89	0	225	40	4	20	34	1.73
109984--110042	31	1.9	31	82	6	75	52	1	15	30	1.52
112603--112634	2	16.0	2	100	0	64	50	0	0	50	1.00
115313--115434	45	2.7	45	79	0	127	22	43	18	15	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115709--115779	22	3.2	22	64	7	54	32	5	5	56	1.46
115696--115782	44	2.0	44	97	0	165	31	5	5	57	1.46
115875--115969	45	2.1	45	92	1	156	49	2	10	37	1.49
117586--117610	12	2.1	12	100	0	50	76	8	0	16	1.02
122081--122151	27	2.7	26	86	4	99	14	15	14	56	1.68
122448--122546	21	4.8	20	75	6	81	37	22	19	21	1.94
122514--122742	20	11.4	20	82	5	248	36	26	17	18	1.94
123435--123481	24	2.0	24	83	8	60	27	14	19	38	1.91
125976--126209	72	3.3	72	81	10	288	46	17	21	14	1.84
125962--126231	53	5.1	52	88	8	397	45	17	21	14	1.84
125943--126236	72	4.2	68	78	13	267	44	18	21	14	1.86
125962--126231	105	2.6	105	90	7	408	45	17	21	14	1.84
126227--126344	54	2.2	52	94	4	209	13	24	16	44	1.84
126246--126344	20	5.4	19	83	12	127	14	23	16	46	1.83
126255--126352	19	5.3	19	80	13	71	15	23	15	45	1.84
126451--126487	14	2.6	14	91	0	65	45	21	0	32	1.52
127336--127432	20	5.2	20	72	18	100	46	17	24	11	1.81
127334--127398	21	3.1	21	82	4	96	47	15	26	10	1.78
127383--127439	14	3.7	14	75	20	60	43	22	24	8	1.81
127334--127456	33	3.5	33	90	8	165	46	18	24	10	1.81
127457--127564	19	5.7	19	75	16	82	12	20	20	47	1.81
127500--127576	21	3.7	21	82	6	102	14	22	16	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127656--127726	33	2.2	33	89	0	106	49	16	21	12	1.79
128106--128197	20	4.6	20	86	5	114	15	19	28	36	1.92
131952--132063	55	2.0	55	91	0	179	20	20	18	40	1.92
135081--135107	11	2.5	11	100	0	54	37	25	18	18	1.94
136521--136571	21	2.5	21	90	3	77	43	9	21	25	1.83
136868--136939	31	2.3	32	83	7	94	44	20	2	31	1.66
140771--140825	16	3.4	17	80	12	53	36	10	23	29	1.89
152533--152572	2	20.0	2	89	0	62	2	50	0	47	1.14
161193--161248	29	1.9	29	85	0	76	62	8	0	28	1.25
166312--166360	21	2.3	21	96	0	89	51	2	0	46	1.12

Tables:   1   2