genome.fa.s9309.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009309.1 Hibiscus syriacus cultivar Beakdansim tig00113046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78360

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291--378	24	3.7	24	85	0	104	42	19	14	23	1.88
301--398	24	4.1	24	82	3	92	41	17	16	24	1.89
301--398	48	2.1	47	84	5	126	41	17	16	24	1.89
2582--2630	19	2.4	19	80	10	53	26	20	32	20	1.97
4732--4798	21	2.9	24	78	13	86	41	19	16	22	1.90
19338--19396	22	2.8	22	92	5	95	22	33	23	20	1.97
28074--28486	208	2.0	201	96	3	763	39	19	19	21	1.92
33351--33393	4	10.8	4	94	0	77	74	0	0	25	0.82
38210--38259	22	2.3	22	85	0	73	40	20	22	18	1.92
40531--40725	36	5.4	35	82	6	135	42	5	8	43	1.57
40569--40797	36	6.2	34	79	12	208	43	4	6	44	1.52
40572--40776	71	2.8	72	83	8	227	44	4	6	43	1.52
40760--40884	27	4.2	30	86	10	150	40	3	5	50	1.42
40739--40862	56	2.2	57	84	8	155	40	3	5	50	1.42
40844--40945	42	2.5	42	81	10	122	45	0	4	49	1.30
40644--40945	39	7.5	42	72	14	119	43	2	5	48	1.41
40962--41010	3	15.7	3	87	8	71	28	0	2	69	1.00
40959--41014	16	3.5	16	90	7	87	28	0	1	69	0.98
40962--41010	25	2.0	25	95	0	89	28	0	2	69	1.00
42264--42292	15	1.9	15	100	0	58	24	0	0	75	0.80
42332--42380	12	4.0	12	86	5	71	18	2	2	77	0.96
43784--43844	27	2.3	27	97	0	113	21	9	14	54	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48164--48198	18	1.9	18	88	11	54	28	17	20	34	1.95
50487--50520	17	2.0	17	88	0	50	38	8	0	52	1.33
54938--54971	15	2.3	15	90	10	52	26	2	2	67	1.19
55044--55363	177	1.8	173	87	4	471	31	11	15	41	1.82
54946--55475	173	3.1	172	77	7	497	32	12	12	41	1.81
59432--59494	26	2.4	26	94	0	108	19	14	22	44	1.86
64706--64768	26	2.4	26	94	0	108	19	14	22	44	1.86
69971--70036	26	2.6	25	92	2	105	21	13	21	43	1.86
73452--73502	20	2.5	20	84	12	68	35	5	21	37	1.78
74722--74764	22	2.0	22	86	4	61	53	4	6	34	1.49

Tables:   1

The End!