genome.fa.s931.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000931.1 Hibiscus syriacus cultivar Beakdansim tig00001857_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102355

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1158--1274	60	1.9	61	86	5	166	36	4	11	47	1.60
1227--1316	44	2.1	43	87	2	126	33	2	11	53	1.49
12850--12928	29	2.7	30	84	4	97	27	5	12	54	1.59
14619--14665	20	2.4	19	82	10	58	44	2	4	48	1.34
15475--15539	11	5.6	11	72	16	51	27	23	23	26	2.00
15512--15580	35	2.2	31	80	17	79	33	26	13	27	1.93
17417--17457	15	2.7	15	96	0	73	21	12	7	58	1.58
17589--17686	7	14.1	7	86	6	110	46	34	0	18	1.49
17721--17780	32	1.9	31	86	3	84	48	3	1	46	1.28
19882--19989	40	2.7	40	91	0	171	24	28	21	25	1.99
19881--19989	20	5.4	20	93	0	155	24	28	21	25	1.99
20595--20658	19	3.6	19	82	16	84	14	20	21	43	1.87
22249--22340	42	2.2	42	86	5	134	20	15	41	22	1.90
22279--22336	21	2.8	21	71	10	64	22	13	39	24	1.90
22678--22716	20	2.0	20	89	0	60	35	28	10	25	1.89
22704--22749	20	2.3	20	92	0	74	34	26	23	15	1.94
22759--22817	14	3.9	14	74	20	55	52	23	13	10	1.71
22743--22811	33	2.1	33	91	0	111	50	21	13	14	1.76
22754--22822	33	2.1	33	88	0	102	53	21	13	11	1.70
22754--22833	33	2.4	33	85	4	99	52	23	12	11	1.71
22829--22895	19	3.8	19	75	18	81	13	19	17	49	1.80
22834--22921	33	2.7	33	92	0	140	12	17	19	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22923--22964	20	2.1	20	86	0	57	16	21	26	35	1.94
23872--23901	15	1.9	16	93	6	53	63	13	3	20	1.43
24848--24906	20	3.0	20	87	0	73	44	22	18	15	1.87
25155--25198	22	2.0	22	90	0	70	20	15	43	20	1.88
25385--25457	20	3.7	20	92	0	119	26	19	27	27	1.99
25405--25523	61	2.0	59	84	14	154	22	16	27	32	1.96
25467--25518	19	2.7	20	81	6	61	23	19	30	26	1.98
28758--28818	22	2.9	22	80	4	72	21	0	26	52	1.47
28871--28915	21	2.1	22	87	4	65	17	2	28	51	1.58
28891--28929	14	2.7	15	76	8	53	15	0	28	56	1.40
28870--28922	21	2.5	20	82	8	61	18	1	28	50	1.57
32896--32937	19	2.4	17	81	14	57	52	0	4	42	1.22
32901--32937	19	1.9	19	94	0	65	51	0	5	43	1.24
33974--34016	18	2.3	18	84	4	50	51	9	6	32	1.61
36495--36537	2	21.5	2	100	0	86	51	0	0	48	1.00
36639--36676	11	3.4	11	85	10	51	73	0	2	23	0.95
37987--38040	17	3.1	18	84	7	51	24	16	22	37	1.94
38001--38040	17	2.4	17	91	0	62	25	17	20	37	1.94
38483--39193	84	8.4	84	81	2	791	24	18	24	32	1.97
38483--39171	168	4.1	168	86	0	921	24	19	24	32	1.97
38483--39193	337	2.1	337	88	1	1057	24	18	24	32	1.97
40049--40304	95	2.7	95	93	0	424	31	18	17	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44271--44316	15	3.2	15	85	11	53	60	0	6	32	1.22
44561--44602	11	3.8	11	84	6	50	78	0	2	19	0.86
47003--47149	50	2.9	49	86	6	188	40	8	17	34	1.79
48530--48559	9	3.3	9	95	0	51	20	20	30	30	1.97
50813--50857	2	22.5	2	100	0	90	48	0	0	51	1.00
62627--62676	21	2.4	21	86	6	66	38	24	16	22	1.93
63586--63709	45	2.8	45	96	0	230	33	17	24	24	1.96
64371--64422	19	2.5	21	81	15	72	36	15	11	36	1.84
64790--64895	55	1.9	55	90	0	167	27	23	13	35	1.92
65726--65760	17	2.1	17	88	0	52	45	17	5	31	1.71
68293--68359	32	2.1	32	88	0	98	19	14	17	47	1.82
71831--71914	43	2.0	42	87	0	114	34	21	10	33	1.88
73295--73353	26	2.2	28	84	6	77	62	1	5	30	1.26
74136--74165	2	15.0	2	100	0	60	50	0	0	50	1.00
75350--75418	35	2.0	35	97	0	129	43	27	1	27	1.64
76609--76646	13	2.8	14	80	8	51	55	18	5	21	1.62
79116--79164	15	3.3	15	97	0	89	38	8	8	44	1.64
87405--87452	21	2.3	21	85	0	60	14	18	45	20	1.85
87564--88040	42	11.5	42	71	9	253	31	23	15	30	1.95
87655--88040	84	4.6	83	77	9	304	30	23	15	30	1.96
87560--88080	124	4.2	124	77	5	419	30	23	16	30	1.96
98219--98292	34	2.1	34	87	7	103	50	1	2	45	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99158--99213	24	2.3	24	77	14	62	53	1	1	42	1.21
100265--100316	18	2.9	18	88	0	77	28	30	21	19	1.97
100364--100440	21	3.7	21	74	6	59	37	22	15	24	1.93
101324--101362	20	2.0	20	85	5	53	30	30	12	25	1.93

Tables:   1

The End!