Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009310.1 Hibiscus syriacus cultivar Beakdansim tig00113047_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43508

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--47
14
2.7
14
91
0
67
10
28
39
21
1.86
88--145
29
2.0
29
89
0
89
22
27
36
13
1.92
1884--1908
2
12.5
2
100
0
50
48
0
0
52
1.00
3437--3470
2
17.0
2
93
0
59
47
0
52
0
1.00
14318--14404
35
2.5
34
83
12
106
56
9
8
26
1.58
14417--14525
48
2.3
51
81
12
122
66
6
4
22
1.34
14616--14654
18
2.2
18
90
0
60
12
35
20
30
1.90
14940--14976
18
2.1
18
94
0
65
21
27
27
24
1.99
16483--16704
111
2.0
111
96
0
408
45
10
7
35
1.68
18326--18350
11
2.3
11
100
0
50
56
0
0
44
0.99
24401--24452
20
2.6
20
96
0
95
28
23
7
40
1.82
28499--28585
36
2.5
35
83
7
104
31
8
17
43
1.78
29018--29051
16
2.1
16
94
0
59
32
8
26
32
1.87
29801--29833
15
2.1
16
88
5
50
51
15
24
9
1.72
33075--33161
36
2.5
35
83
7
104
31
8
17
43
1.78
37939--37981
21
2.0
21
81
0
50
30
30
25
13
1.94
37961--38112
67
2.2
68
87
5
211
27
26
27
18
1.98
38468--38525
28
2.0
30
86
10
84
37
6
22
32
1.81
38745--38811
22
3.0
22
100
0
134
19
26
26
26
1.99

Tables:   1

The End!