Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01009311.1 Hibiscus syriacus cultivar Beakdansim tig00113052_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5640
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29


Found at i:28 original size:11 final size:11

Alignment explanation


    Indices: 12--44  Score: 50
    Period size: 11  Copynumber: 3.0  Consensus size: 11

          2 GATTCCCCAT

                       
         12 GAGAAAAGAAA
          1 GAGAAAAGAAA

                       
         23 GAGAAAAGAAA
          1 GAGAAAAGAAA

                        
         34 GA-AGAAAGAAA
          1 GAGA-AAAGAAA

         45 AAGACTAAGC


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  10    1  0.05
  11   20  0.95

ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00


Consensus pattern (11 bp):   
GAGAAAAGAAA

Found at i:628 original size:22 final size:22

Alignment explanation


    Indices: 554--620  Score: 125
    Period size: 22  Copynumber: 3.0  Consensus size: 22

        544 TTATGGACAT

                           *      
        554 AATTCTACGGGCACTACGGTGC
          1 AATTCTACGGGCACTTCGGTGC

                                  
        576 AATTCTACGGGCACTTCGGTGC
          1 AATTCTACGGGCACTTCGGTGC

                                  
        598 AATTCTACGGGCACTTCGGTGC
          1 AATTCTACGGGCACTTCGGTGC

             
        620 A
          1 A

        621 TTTATACGAG


Statistics
Matches: 44,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  22   44  1.00

ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25


Consensus pattern (22 bp):   
AATTCTACGGGCACTTCGGTGC
Done.