Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009313.1 Hibiscus syriacus cultivar Beakdansim tig00113059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105643

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7300--7337
17
2.2
18
85
4
51
34
13
10
42
1.78
7344--7402
17
3.5
17
68
13
50
30
13
8
47
1.73
10175--10214
17
2.4
17
86
0
53
32
15
12
40
1.84
10270--10315
18
2.6
18
92
0
74
34
6
13
45
1.69
13076--13115
17
2.4
17
86
0
53
30
15
15
40
1.87
13171--13216
18
2.6
18
92
0
74
34
6
13
45
1.69
15975--16014
17
2.4
17
86
0
53
30
15
15
40
1.87
16070--16115
18
2.6
18
92
0
74
32
6
13
47
1.68
18826--18865
17
2.4
17
86
0
53
32
15
12
40
1.84
18872--18930
17
3.5
17
68
13
50
30
13
8
47
1.73
18921--18966
18
2.6
18
92
0
74
32
6
13
47
1.68
21747--21782
18
1.9
19
88
5
56
52
2
27
16
1.57
22500--22539
17
2.4
17
86
0
53
30
15
15
40
1.87
25325--25364
17
2.4
17
86
0
53
30
15
15
40
1.87
25419--25463
17
2.6
18
92
3
74
31
6
13
48
1.68
28157--28196
17
2.4
17
86
0
53
30
15
15
40
1.87
29031--29539
252
2.0
248
96
3
934
32
19
13
34
1.91
31217--31256
17
2.4
17
86
0
53
30
15
15
40
1.87
31312--31357
18
2.6
18
92
0
74
32
6
13
47
1.68
34101--34159
17
3.5
17
68
13
50
30
13
8
47
1.73
34150--34195
18
2.6
18
92
0
74
32
6
13
47
1.68
37670--37709
17
2.4
17
86
0
53
32
15
12
40
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39215--39256
22
1.9
22
90
9
68
14
11
4
69
1.34
42399--42423
12
2.1
12
100
0
50
16
24
16
44
1.86
45187--45227
22
1.9
21
90
5
64
80
7
12
0
0.90
45195--45234
11
3.6
11
79
0
53
85
2
12
0
0.71
45183--45241
28
2.1
28
83
3
73
81
8
10
0
0.88
52050--52074
9
2.8
9
100
0
50
92
0
0
8
0.40
56567--56617
20
2.5
20
93
0
84
25
5
33
35
1.80
61412--61451
17
2.4
17
86
0
53
32
15
12
40
1.84
61507--61545
18
2.2
18
95
0
69
35
5
15
43
1.69
68531--68583
17
3.1
17
84
10
56
0
20
1
77
0.87
73141--73182
19
2.4
17
80
11
57
61
14
14
9
1.55
75931--75960
13
2.4
13
94
5
53
43
0
30
26
1.55
102969--103005
8
4.6
8
93
0
56
10
2
18
67
1.32
103001--103038
1
38.0
1
89
0
58
0
0
5
94
0.30
103001--103038
11
3.5
11
96
3
69
0
0
5
94
0.30
103001--103038
20
1.9
20
94
0
67
0
0
5
94
0.30

Tables:   1

The End!