Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009314.1 Hibiscus syriacus cultivar Beakdansim tig00113068_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106728

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4650--4674
11
2.3
11
100
0
50
44
0
0
56
0.99
9867--9909
18
2.3
19
80
11
54
67
0
2
30
1.03
10295--10333
20
2.0
20
84
0
51
58
7
10
23
1.56
14410--14455
20
2.2
20
88
3
65
56
17
10
15
1.67
19777--19856
21
3.8
21
93
0
133
6
30
42
21
1.77
21457--21591
24
5.5
23
76
21
125
30
17
15
36
1.91
21457--21599
50
2.8
50
89
7
211
30
18
16
34
1.93
21476--21600
26
5.0
25
72
21
111
33
18
15
32
1.92
23221--23280
25
2.4
25
86
5
77
15
8
1
75
1.12
23294--23357
18
3.8
17
77
22
64
6
1
12
79
0.98
23293--23357
11
5.9
11
82
8
71
6
1
12
80
0.97
23296--23380
22
3.7
22
78
9
73
8
2
10
78
1.04
23326--23425
20
4.9
20
74
16
71
10
5
6
79
1.06
23326--23421
21
4.7
20
75
15
72
9
5
6
79
1.06
23369--23431
29
2.2
29
83
11
76
14
6
3
76
1.11
23354--23436
31
2.7
30
80
10
87
13
6
3
77
1.09
23398--23427
12
2.4
12
94
5
51
13
6
0
80
0.91
23997--24033
13
2.8
13
91
0
56
29
40
13
16
1.86
31493--31567
3
25.0
3
100
0
150
66
0
0
33
0.92
31731--32585
137
6.2
137
89
1
1234
24
15
25
34
1.95
32204--32312
40
2.6
42
78
7
123
18
18
30
33
1.95
32478--32603
43
3.0
43
73
11
152
21
13
26
38
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40558--40613
22
2.5
22
81
16
62
64
8
5
21
1.42
41610--41641
16
2.1
15
94
5
55
78
0
0
21
0.76
43105--43152
23
2.1
23
84
7
62
18
35
20
25
1.95
43684--43757
3
24.7
3
100
0
148
66
0
0
33
0.92
48844--49249
121
3.3
119
81
7
478
33
24
16
24
1.96
48846--49249
120
3.3
118
82
5
452
33
24
16
24
1.96
51306--51378
23
3.2
21
76
9
65
12
1
12
73
1.15
51314--51345
10
3.4
10
91
8
50
9
0
15
75
1.05
57900--58032
63
2.1
63
98
0
257
35
27
10
27
1.89
66246--66297
24
2.2
23
82
3
59
34
23
23
19
1.96
70345--70745
49
8.0
49
77
8
367
30
22
13
33
1.93
70447--70566
61
2.0
60
91
1
195
29
24
11
35
1.91
70508--70761
97
2.6
97
92
0
409
29
23
13
33
1.93
71858--71945
36
2.5
37
87
7
137
42
3
7
46
1.50
72013--72060
13
3.7
13
85
0
69
18
10
0
70
1.15
75294--75334
21
1.9
22
85
5
57
31
34
12
21
1.91
81143--81172
3
10.0
3
100
0
60
33
0
0
66
0.92
87392--87448
14
4.1
14
83
0
69
15
12
14
57
1.65
89363--89453
27
3.6
26
74
17
75
53
1
4
40
1.28
89593--89889
146
2.0
146
94
0
522
52
5
6
36
1.48
89757--89804
16
2.6
19
78
15
57
56
2
2
39
1.23
90525--90575
25
2.0
26
85
11
70
49
0
3
47
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91022--91061
21
1.9
21
89
0
62
42
12
12
32
1.80

Tables:   1

The End!