genome.fa.s9315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009315.1 Hibiscus syriacus cultivar Beakdansim tig00113070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85481

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32--163	13	10.1	13	70	18	87	46	7	5	40	1.55
4--126	39	3.4	36	75	15	119	47	8	4	39	1.54
92--159	29	2.4	29	80	4	77	42	8	5	42	1.60
205--269	18	3.3	19	79	16	71	44	4	4	46	1.44
243--363	56	2.2	56	89	5	185	47	6	4	41	1.48
730--769	21	1.9	21	89	0	62	37	7	10	45	1.66
822--914	36	2.6	36	84	0	105	40	3	9	46	1.53
926--1177	14	16.4	17	64	29	72	45	3	1	48	1.30
983--1198	30	7.3	28	74	17	127	45	3	1	49	1.28
1140--1204	23	2.8	23	79	13	62	43	4	1	50	1.32
968--1198	58	3.9	58	73	15	170	45	4	1	48	1.30
1488--1528	20	1.9	21	85	14	57	31	24	2	41	1.68
2215--2257	19	2.4	17	84	7	50	13	0	16	69	1.19
5517--5570	23	2.3	24	90	3	92	48	9	1	40	1.46
5590--5652	13	4.8	13	72	12	58	41	3	1	53	1.26
5790--5829	16	2.5	15	88	8	53	45	7	20	27	1.78
5846--5884	16	2.4	16	91	0	60	41	15	25	17	1.89
6746--6784	21	2.0	21	85	10	55	58	10	20	10	1.59
8381--8426	22	2.2	22	92	7	78	30	13	4	52	1.59
9721--9760	21	1.9	21	90	10	64	57	7	5	30	1.48
14128--14164	17	2.3	16	90	9	58	18	0	27	54	1.44
16710--16767	11	5.8	9	80	15	53	15	1	3	79	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16716--16763	14	3.5	13	80	5	51	14	2	2	81	0.88
16734--16767	17	2.0	17	88	0	50	14	2	2	79	0.97
18704--18742	5	7.8	5	94	0	60	5	61	33	0	1.18
18704--18742	15	2.6	15	91	0	69	5	61	33	0	1.18
19393--19500	21	5.2	21	77	12	116	30	25	20	23	1.98
19383--19494	41	2.7	41	80	12	122	33	25	18	22	1.97
19509--19625	21	5.6	21	94	0	198	23	22	26	28	1.99
19393--19626	83	2.8	83	79	10	219	27	23	22	26	2.00
28625--28661	18	2.1	18	94	0	65	40	5	24	29	1.77
28631--28677	18	2.7	18	86	3	60	40	8	23	27	1.83
29239--29326	37	2.4	37	96	1	158	38	39	11	10	1.75
29405--29433	2	14.5	2	100	0	58	51	0	0	48	1.00
30218--30821	246	2.4	253	88	7	884	41	19	11	26	1.86
30952--31162	108	2.0	108	88	3	318	33	21	18	25	1.97
33155--33364	41	5.2	41	83	5	257	26	16	26	30	1.97
37953--38030	31	2.5	31	87	0	111	37	10	26	25	1.88
39756--39823	31	2.2	31	84	5	84	29	25	11	33	1.91
40074--40116	23	1.9	23	85	4	61	53	0	4	41	1.21
42259--42353	2	51.0	2	66	14	51	50	0	0	49	1.00
50770--50810	16	2.6	16	82	17	50	43	0	0	56	0.99
51799--51839	20	2.1	19	86	4	55	39	2	0	58	1.11
51900--51943	15	2.6	17	79	13	56	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51900--51942	3	13.3	3	90	4	50	34	0	2	62	1.08
51858--51968	46	2.2	51	81	12	124	33	3	7	55	1.44
52000--52059	18	3.4	18	76	2	68	25	10	0	65	1.24
52558--52584	14	1.9	14	100	0	54	29	11	0	59	1.32
63218--63244	1	27.0	1	100	0	54	100	0	0	0	0.00
64038--64960	419	2.2	420	97	0	1769	32	25	18	22	1.97
64038--64960	105	8.8	105	98	0	1760	32	25	18	22	1.97
65041--65082	20	2.1	20	90	0	66	26	23	16	33	1.96
65296--65331	16	2.1	18	90	10	58	44	0	0	55	0.99
66319--66357	18	2.1	19	85	4	53	38	2	0	58	1.12
66375--66475	46	2.0	54	81	14	128	33	3	7	54	1.48
66519--66569	18	2.9	18	75	11	52	23	11	0	64	1.26
68964--69008	2	22.5	2	100	0	90	48	0	0	51	1.00
77250--77337	43	2.0	44	97	2	169	35	15	13	35	1.87
81624--81662	12	3.5	12	80	20	57	28	10	33	28	1.90
81615--81662	21	2.3	21	92	7	80	27	8	35	29	1.86
82958--83021	17	3.7	16	78	14	56	32	10	10	45	1.74

Tables:   1

The End!