Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009316.1 Hibiscus syriacus cultivar Beakdansim tig00113072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 190145
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Found at i:12 original size:7 final size:7
Alignment explanation
Indices: 1--16126 Score: 28961
Period size: 7 Copynumber: 2338.4 Consensus size: 7
*
1 AACCCGA
1 AACCCTA
*
8 AACCCGA
1 AACCCTA
*
15 AACCCGA
1 AACCCTA
*
22 AACCCGA
1 AACCCTA
*
29 AACCCGA
1 AACCCTA
*
36 AACCCGA
1 AACCCTA
*
43 AACCCGA
1 AACCCTA
50 AACCCTA
1 AACCCTA
*
57 AACCCGA
1 AACCCTA
*
64 AACCCGA
1 AACCCTA
*
71 AACCCGA
1 AACCCTA
*
78 AACCCGA
1 AACCCTA
85 AACCCTA
1 AACCCTA
92 AACCCTA
1 AACCCTA
*
99 AACCC-G
1 AACCCTA
105 AACCCTA
1 AACCCTA
*
112 AACCCGA
1 AACCCTA
119 AACCCTA
1 AACCCTA
126 AACCCTA
1 AACCCTA
*
133 AACCCGA
1 AACCCTA
140 AACCCTA
1 AACCCTA
147 AA-CC-A
1 AACCCTA
152 AACCCTA
1 AACCCTA
159 AACCCTA
1 AACCCTA
166 AA--C-A
1 AACCCTA
*
170 AACCCGA
1 AACCCTA
*
177 AACCCGA
1 AACCCTA
*
184 AACCCGA
1 AACCCTA
191 AACCC-A
1 AACCCTA
197 AACCC-A
1 AACCCTA
*
203 AACCCGA
1 AACCCTA
210 AACCCTA
1 AACCCTA
217 AACCCTA
1 AACCCTA
224 AACCCTAA
1 AACCCT-A
232 AACCCTA
1 AACCCTA
239 AACCCTA
1 AACCCTA
246 AACCCTA
1 AACCCTA
253 AA-CCTA
1 AACCCTA
259 AACCCTA
1 AACCCTA
*
266 AACCCGA
1 AACCCTA
273 AACCCTA
1 AACCCTA
280 AACCC-A
1 AACCCTA
286 AACCCTA
1 AACCCTA
*
293 AA-CCGA
1 AACCCTA
299 AACCCTA
1 AACCCTA
306 AACCCT-
1 AACCCTA
312 AA-CCTA
1 AACCCTA
318 AACCCTA
1 AACCCTA
325 AACCCTA
1 AACCCTA
332 AACCCTA
1 AACCCTA
339 AACCCTA
1 AACCCTA
346 AACCC-A
1 AACCCTA
352 AACCCT-
1 AACCCTA
358 AACCCTA
1 AACCCTA
*
365 AACCCGA
1 AACCCTA
*
372 AACCCGA
1 AACCCTA
379 AACCCTA
1 AACCCTA
386 AACCCTA
1 AACCCTA
393 AACCCTA
1 AACCCTA
400 AACCCTA
1 AACCCTA
407 AACCC-A
1 AACCCTA
413 AACCCTA
1 AACCCTA
*
420 AACCCGA
1 AACCCTA
427 AACCCTA
1 AACCCTA
434 AACCCTA
1 AACCCTA
441 AACCCTA
1 AACCCTA
448 AACCCTA
1 AACCCTA
*
455 AACCCGA
1 AACCCTA
462 AACCCTA
1 AACCCTA
469 AACCC--
1 AACCCTA
*
474 -ACCCGA
1 AACCCTA
*
480 AACCCGA
1 AACCCTA
487 AACCCTA
1 AACCCTA
*
494 AACCCGA
1 AACCCTA
501 AACCCTA
1 AACCCTA
508 AACCCTA
1 AACCCTA
515 AACCCTA
1 AACCCTA
522 AACCC-A
1 AACCCTA
528 AACCCTA
1 AACCCTA
535 AACCCT-
1 AACCCTA
541 AACCCTA
1 AACCCTA
*
548 AACCCGA
1 AACCCTA
555 AA-CCT-
1 AACCCTA
560 AACCCTA
1 AACCCTA
*
567 AACCCGA
1 AACCCTA
574 AACCCCTA
1 AA-CCCTA
582 AACCCTA
1 AACCCTA
*
589 AACCCGA
1 AACCCTA
*
596 AACCCGA
1 AACCCTA
603 AACCC-A
1 AACCCTA
609 AACCCTA
1 AACCCTA
616 AACCCTA
1 AACCCTA
623 AACCCTA
1 AACCCTA
630 AACCCTA
1 AACCCTA
637 AACCCTA
1 AACCCTA
*
644 AACCC-G
1 AACCCTA
650 AACCCTAA
1 AACCCT-A
*
658 AACCCGA
1 AACCCTA
665 AACCCTA
1 AACCCTA
672 AACCCTAAA
1 AACCCT--A
681 AACCCT-
1 AACCCTA
687 AACCCTAAA
1 AACCCT--A
696 AACCCTA
1 AACCCTA
703 AACCCTA
1 AACCCTA
*
710 AACCCGA
1 AACCCTA
717 AACCCTA
1 AACCCTA
*
724 AACCCGA
1 AACCCTA
*
731 AACCC-G
1 AACCCTA
*
737 AACCCGA
1 AACCCTA
744 AACCCTA
1 AACCCTA
751 AACCCTA
1 AACCCTA
*
758 AACCCGA
1 AACCCTA
765 AACCCTA
1 AACCCTA
*
772 AACCCGA
1 AACCCTA
779 AACCCTA
1 AACCCTA
786 AACCCTA
1 AACCCTA
793 AACCCTA
1 AACCCTA
800 AACCCTA
1 AACCCTA
807 AACCCTA
1 AACCCTA
814 AACCCTA
1 AACCCTA
821 AA-CCTA
1 AACCCTA
827 AA-CCTA
1 AACCCTA
833 AACCCTA
1 AACCCTA
*
840 AACCCGA
1 AACCCTA
*
847 AACCCGA
1 AACCCTA
854 AACCCTA
1 AACCCTA
861 AACCCTA
1 AACCCTA
868 AACCCTA
1 AACCCTA
*
875 AACCCGA
1 AACCCTA
882 AACCCTA
1 AACCCTA
889 AACCC--
1 AACCCTA
894 AACCCTA
1 AACCCTA
901 AACCCT-
1 AACCCTA
907 AACCCTA
1 AACCCTA
914 AACCCTA
1 AACCCTA
921 AACCC-A
1 AACCCTA
927 AACCCTA
1 AACCCTA
934 AACCCTA
1 AACCCTA
941 AACCCTA
1 AACCCTA
948 AACCCTA
1 AACCCTA
955 AACCCTA
1 AACCCTA
*
962 AACCCGA
1 AACCCTA
969 AACCCTA
1 AACCCTA
*
976 AACCCGA
1 AACCCTA
*
983 AACCCGA
1 AACCCTA
990 AACCCT-
1 AACCCTA
996 AACCCTA
1 AACCCTA
1003 AACCCTA
1 AACCCTA
1010 AACCC-A
1 AACCCTA
1016 AACCCTA
1 AACCCTA
*
1023 AACCCGA
1 AACCCTA
1030 AACCCTA
1 AACCCTA
1037 AACCCTA
1 AACCCTA
1044 AACCCT-
1 AACCCTA
1050 AACCCTA
1 AACCCTA
1057 AACCCTA
1 AACCCTA
1064 AACCCTA
1 AACCCTA
*
1071 AACCCGA
1 AACCCTA
1078 AACCCTA
1 AACCCTA
1085 AACCCT-
1 AACCCTA
1091 AACCCTA
1 AACCCTA
1098 AACCCTA
1 AACCCTA
*
1105 AACCCGA
1 AACCCTA
1112 AACCCTA
1 AACCCTA
1119 AACCCTA
1 AACCCTA
1126 AACCCT-
1 AACCCTA
1132 AACCCT-
1 AACCCTA
1138 AACCCTA
1 AACCCTA
1145 AACCCTA
1 AACCCTA
1152 AACCCT-
1 AACCCTA
1158 AA-CCTA
1 AACCCTA
1164 AACCCTA
1 AACCCTA
1171 AACCCTA
1 AACCCTA
1178 AACCCTA
1 AACCCTA
1185 AACCCTA
1 AACCCTA
1192 AACCCTA
1 AACCCTA
1199 AACCC--
1 AACCCTA
1204 AACCC--
1 AACCCTA
1209 AACCCTAAA
1 AACCCT--A
1218 AACCCTA
1 AACCCTA
1225 AACCCTA
1 AACCCTA
1232 AA-CCTA
1 AACCCTA
1238 AACCCTA
1 AACCCTA
1245 AACCCTA
1 AACCCTA
1252 AACCCTA
1 AACCCTA
*
1259 AACCCGA
1 AACCCTA
1266 AACCCTA
1 AACCCTA
1273 AACCCTA
1 AACCCTA
*
1280 AACCCGA
1 AACCCTA
1287 ACACCCTA
1 A-ACCCTA
1295 AACCCTA
1 AACCCTA
1302 AACCC--
1 AACCCTA
1307 AACCCTA
1 AACCCTA
1314 AACCCTA
1 AACCCTA
1321 AACCCTA
1 AACCCTA
1328 AACCCTA
1 AACCCTA
1335 AACCCTA
1 AACCCTA
1342 AACCCTA
1 AACCCTA
1349 AACCCTA
1 AACCCTA
1356 AACCCTA
1 AACCCTA
1363 AACCCT-
1 AACCCTA
1369 AACCCTA
1 AACCCTA
1376 AACCCTA
1 AACCCTA
1383 AA-CCTA
1 AACCCTA
1389 AACCCTA
1 AACCCTA
1396 AACCCTA
1 AACCCTA
1403 AACCCTA
1 AACCCTA
*
1410 AACCCGA
1 AACCCTA
1417 AACCCTA
1 AACCCTA
1424 AACCCT-
1 AACCCTA
1430 AA-CCTA
1 AACCCTA
1436 AACCCTA
1 AACCCTA
1443 AACCCT-
1 AACCCTA
1449 AACCC-A
1 AACCCTA
1455 AACCCTA
1 AACCCTA
1462 AACCCT-
1 AACCCTA
1468 AACCCTA
1 AACCCTA
1475 AACCCTA
1 AACCCTA
1482 AACCCT-
1 AACCCTA
1488 AACCC-A
1 AACCCTA
1494 AACCCTA
1 AACCCTA
1501 AACCCT-
1 AACCCTA
1507 AACCCTA
1 AACCCTA
*
1514 AACCCGA
1 AACCCTA
1521 AACCCTA
1 AACCCTA
1528 AACCCTA
1 AACCCTA
1535 AACCCTA
1 AACCCTA
1542 AACCCTA
1 AACCCTA
1549 AACCCCTA
1 AA-CCCTA
1557 AACCC--
1 AACCCTA
1562 AACCCT-
1 AACCCTA
1568 AACCCTA
1 AACCCTA
1575 AACCCTA
1 AACCCTA
1582 AACCCTA
1 AACCCTA
1589 AACCCTA
1 AACCCTA
*
1596 AACCCGA
1 AACCCTA
1603 AACCCTA
1 AACCCTA
1610 AACCCTA
1 AACCCTA
1617 AACCC--
1 AACCCTA
1622 AACCCTA
1 AACCCTA
1629 AACCCT-
1 AACCCTA
*
1635 AA-CC-G
1 AACCCTA
*
1640 AACCCGA
1 AACCCTA
1647 AACCC--
1 AACCCTA
1652 AA-CCTA
1 AACCCTA
1658 AA-CCTA
1 AACCCTA
1664 AACCCTA
1 AACCCTA
1671 AACCCTA
1 AACCCTA
1678 AACCCT-
1 AACCCTA
1684 AACCCT-
1 AACCCTA
1690 AACCC-A
1 AACCCTA
1696 AACCCTA
1 AACCCTA
1703 AACCCT-
1 AACCCTA
1709 AACCCTA
1 AACCCTA
1716 AACCCTA
1 AACCCTA
1723 AACCCTA
1 AACCCTA
1730 AACCCTA
1 AACCCTA
1737 AACCCTA
1 AACCCTA
*
1744 AA-CCGA
1 AACCCTA
1750 AACCCTA
1 AACCCTA
1757 AACCCTA
1 AACCCTA
1764 AACCCTA
1 AACCCTA
1771 AACCCT-
1 AACCCTA
1777 AACCCTA
1 AACCCTA
1784 AACCCTA
1 AACCCTA
1791 AA-CCT-
1 AACCCTA
1796 AACCCTA
1 AACCCTA
1803 AACCCTA
1 AACCCTA
1810 AACCCTA
1 AACCCTA
1817 AACCCTA
1 AACCCTA
1824 AACCCTA
1 AACCCTA
1831 AACCCTA
1 AACCCTA
1838 AACCCTA
1 AACCCTA
*
1845 AACCCGA
1 AACCCTA
1852 AACCCTA
1 AACCCTA
1859 AA--CTA
1 AACCCTA
1864 AACCCTA
1 AACCCTA
*
1871 AACCCGA
1 AACCCTA
1878 AACCCTA
1 AACCCTA
1885 AACCCTA
1 AACCCTA
1892 AACCCT-
1 AACCCTA
1898 AACCCTA
1 AACCCTA
1905 AACCCTA
1 AACCCTA
1912 AACCC-A
1 AACCCTA
1918 AACCCT-
1 AACCCTA
1924 AACCCTA
1 AACCCTA
1931 AACCCTA
1 AACCCTA
1938 AACCCTA
1 AACCCTA
1945 AACCCTA
1 AACCCTA
*
1952 AACCCGA
1 AACCCTA
1959 AA-CCTA
1 AACCCTA
*
1965 AACCCGA
1 AACCCTA
1972 AACCCTA
1 AACCCTA
1979 AACCCTA
1 AACCCTA
1986 AACCCTA
1 AACCCTA
1993 AACCCT-
1 AACCCTA
1999 AACCCTA
1 AACCCTA
2006 AACCCTA
1 AACCCTA
2013 AACCCTA
1 AACCCTA
2020 AACCCTA
1 AACCCTA
2027 AACCCT-
1 AACCCTA
2033 AA-CCTA
1 AACCCTA
2039 AACCCTA
1 AACCCTA
2046 AACCCTA
1 AACCCTA
2053 AACCCT-
1 AACCCTA
2059 AACCCTA
1 AACCCTA
2066 AACCCT-
1 AACCCTA
2072 AA-CCTA
1 AACCCTA
2078 AA-CCTA
1 AACCCTA
2084 AACCCTA
1 AACCCTA
*
2091 AACCCGA
1 AACCCTA
2098 AACCCTA
1 AACCCTA
2105 AACCCTA
1 AACCCTA
2112 AACCCT-
1 AACCCTA
2118 -ACCCTA
1 AACCCTA
2124 AA-CCT-
1 AACCCTA
2129 AACCCTA
1 AACCCTA
2136 AACCCT-
1 AACCCTA
2142 AACCCTA
1 AACCCTA
2149 AA-CCTA
1 AACCCTA
2155 AACCCTA
1 AACCCTA
2162 AACCCTA
1 AACCCTA
*
2169 AACCCGA
1 AACCCTA
2176 AACCCTA
1 AACCCTA
2183 AACCCTA
1 AACCCTA
2190 AACCCTA
1 AACCCTA
2197 AACCCTA
1 AACCCTA
2204 AACCCTA
1 AACCCTA
2211 AACCCTA
1 AACCCTA
*
2218 AACCCGA
1 AACCCTA
2225 AACCCTA
1 AACCCTA
2232 AACCCTA
1 AACCCTA
2239 AACCCTA
1 AACCCTA
2246 AACCCT-
1 AACCCTA
2252 AACCCTA
1 AACCCTA
2259 AACCCTA
1 AACCCTA
2266 AACCCTA
1 AACCCTA
2273 AACCCTA
1 AACCCTA
2280 AACCCTA
1 AACCCTA
2287 AACCCTA
1 AACCCTA
2294 AACCCTA
1 AACCCTA
2301 AACCCTA
1 AACCCTA
2308 AACCCTA
1 AACCCTA
2315 AACCCTA
1 AACCCTA
2322 AACCCTA
1 AACCCTA
*
2329 AACCCGA
1 AACCCTA
2336 AACCCTA
1 AACCCTA
2343 AACCCTA
1 AACCCTA
2350 AACCCTA
1 AACCCTA
2357 AACCCTA
1 AACCCTA
2364 AACCCTA
1 AACCCTA
2371 AACCCTA
1 AACCCTA
2378 AACCCTA
1 AACCCTA
2385 AACCCT-
1 AACCCTA
2391 AACCCTA
1 AACCCTA
2398 AACCCTA
1 AACCCTA
2405 AACCC-A
1 AACCCTA
2411 AACCCTA
1 AACCCTA
2418 AACCCTA
1 AACCCTA
2425 AACCCTA
1 AACCCTA
2432 AACCCTA
1 AACCCTA
2439 AACCCTA
1 AACCCTA
2446 AACCCTA
1 AACCCTA
2453 AACCCTA
1 AACCCTA
2460 AACCCTA
1 AACCCTA
2467 AACCCTA
1 AACCCTA
2474 AACCCTA
1 AACCCTA
2481 AACCCTA
1 AACCCTA
2488 AACCCTA
1 AACCCTA
2495 AACCCTA
1 AACCCTA
2502 AACCCTA
1 AACCCTA
2509 AACCCTA
1 AACCCTA
2516 AA--C-A
1 AACCCTA
2520 AACCCTA
1 AACCCTA
2527 AACCCTA
1 AACCCTA
2534 AACCCTA
1 AACCCTA
2541 AACCCT-
1 AACCCTA
2547 AACCCT-
1 AACCCTA
2553 AACCC-A
1 AACCCTA
2559 AACCCTA
1 AACCCTA
2566 AACCCT-
1 AACCCTA
2572 AACCCTA
1 AACCCTA
2579 AACCCTA
1 AACCCTA
2586 AACCCTA
1 AACCCTA
2593 AACCCTA
1 AACCCTA
2600 AACCCTA
1 AACCCTA
2607 AACCCTA
1 AACCCTA
2614 AACCCTA
1 AACCCTA
2621 AACCCTA
1 AACCCTA
2628 AACCCTA
1 AACCCTA
2635 AACCCTA
1 AACCCTA
2642 AACCCTA
1 AACCCTA
2649 AACCCTA
1 AACCCTA
2656 AACCCTA
1 AACCCTA
2663 AACCCTA
1 AACCCTA
2670 AACCCTA
1 AACCCTA
2677 AACCCTA
1 AACCCTA
2684 AACCCTA
1 AACCCTA
2691 AACCCTA
1 AACCCTA
2698 AACCCT-
1 AACCCTA
2704 AA-CCTA
1 AACCCTA
2710 AACCCTA
1 AACCCTA
2717 AACCCTA
1 AACCCTA
2724 AACCCT-
1 AACCCTA
2730 AACCCTA
1 AACCCTA
2737 AACCCTA
1 AACCCTA
2744 AACCCTA
1 AACCCTA
2751 AACCC--
1 AACCCTA
2756 AACCCTA
1 AACCCTA
2763 AACCCTA
1 AACCCTA
2770 AACCCTA
1 AACCCTA
2777 AACCCTA
1 AACCCTA
2784 AACCCTA
1 AACCCTA
2791 AACCCTA
1 AACCCTA
2798 AACCCTA
1 AACCCTA
2805 AACCCTA
1 AACCCTA
2812 AACCCTA
1 AACCCTA
2819 AACCCTA
1 AACCCTA
2826 AACCCTA
1 AACCCTA
2833 AACCCTA
1 AACCCTA
2840 AACCCTA
1 AACCCTA
2847 AACCCTA
1 AACCCTA
2854 AACCCTA
1 AACCCTA
2861 AACCCTA
1 AACCCTA
2868 AACCCTA
1 AACCCTA
2875 AACCCT-
1 AACCCTA
2881 AACCCTA
1 AACCCTA
2888 AACCCTA
1 AACCCTA
2895 AA-CCTA
1 AACCCTA
2901 AACCCTA
1 AACCCTA
2908 AACCCTA
1 AACCCTA
2915 AACCCTA
1 AACCCTA
2922 AACCCTA
1 AACCCTA
2929 AACCCTA
1 AACCCTA
2936 AACCC-A
1 AACCCTA
2942 AACCCTA
1 AACCCTA
2949 AACCCTA
1 AACCCTA
2956 AACCCTA
1 AACCCTA
2963 AACCCTA
1 AACCCTA
2970 AACCCTA
1 AACCCTA
2977 AACCCTA
1 AACCCTA
2984 AACCCTA
1 AACCCTA
2991 AACCCTA
1 AACCCTA
2998 AACCCTA
1 AACCCTA
3005 AACCCTA
1 AACCCTA
3012 AACCCTA
1 AACCCTA
3019 AACCCTA
1 AACCCTA
3026 AACCCT-
1 AACCCTA
3032 AACCCT-
1 AACCCTA
3038 AA-CCT-
1 AACCCTA
3043 AACCCTA
1 AACCCTA
3050 AACCCT-
1 AACCCTA
3056 AACCCTA
1 AACCCTA
3063 AACCCTA
1 AACCCTA
*
3070 AACCCGA
1 AACCCTA
3077 AACCCTA
1 AACCCTA
3084 AACCCTA
1 AACCCTA
3091 AACCCTA
1 AACCCTA
3098 AACCCTA
1 AACCCTA
3105 AACCCTA
1 AACCCTA
3112 AACCCTA
1 AACCCTA
3119 AACCCTA
1 AACCCTA
3126 AACCCTA
1 AACCCTA
3133 AACCCTA
1 AACCCTA
3140 AACCCTA
1 AACCCTA
3147 AACCCTA
1 AACCCTA
3154 AACCCTA
1 AACCCTA
3161 AACCCTA
1 AACCCTA
3168 AACCCTA
1 AACCCTA
3175 AACCCTA
1 AACCCTA
3182 AACCCTA
1 AACCCTA
3189 AACCCTA
1 AACCCTA
3196 AACCCTA
1 AACCCTA
3203 AACCCTA
1 AACCCTA
3210 AACCCTA
1 AACCCTA
3217 AACCCTA
1 AACCCTA
3224 AACCCTA
1 AACCCTA
3231 AACCCTA
1 AACCCTA
3238 AACCCTA
1 AACCCTA
3245 AACCCTA
1 AACCCTA
3252 AACCCTA
1 AACCCTA
3259 AACCCTA
1 AACCCTA
3266 AACCCTA
1 AACCCTA
3273 AACCCTA
1 AACCCTA
3280 AACCCTA
1 AACCCTA
3287 AACCCTA
1 AACCCTA
3294 AACCCTA
1 AACCCTA
3301 AACCCTA
1 AACCCTA
3308 AACCCTA
1 AACCCTA
3315 AACCCTA
1 AACCCTA
3322 AACCCTA
1 AACCCTA
3329 AACCCTA
1 AACCCTA
3336 AACCCTA
1 AACCCTA
3343 AACCCTA
1 AACCCTA
3350 AACCCTA
1 AACCCTA
3357 AACCCTA
1 AACCCTA
3364 AACCCTA
1 AACCCTA
3371 AACCCTA
1 AACCCTA
3378 AACCCTA
1 AACCCTA
3385 AACCCTA
1 AACCCTA
3392 AACCCTA
1 AACCCTA
3399 AACCCTAA
1 AACCCT-A
3407 AACCCTA
1 AACCCTA
3414 AA-CCTA
1 AACCCTA
3420 AACCCTA
1 AACCCTA
3427 AACCCTA
1 AACCCTA
3434 AACCCTA
1 AACCCTA
3441 AACCCTA
1 AACCCTA
3448 AACCCTA
1 AACCCTA
3455 AACCCTA
1 AACCCTA
3462 AACCCTA
1 AACCCTA
3469 AACCCT-
1 AACCCTA
3475 AACCCTA
1 AACCCTA
3482 AACCCTA
1 AACCCTA
3489 AACCCTA
1 AACCCTA
3496 AACCCTA
1 AACCCTA
3503 AACCCTA
1 AACCCTA
3510 AACCCTA
1 AACCCTA
3517 AACCCTA
1 AACCCTA
3524 AACCCTA
1 AACCCTA
3531 AACCCTA
1 AACCCTA
3538 AACCCTA
1 AACCCTA
3545 AACCCTA
1 AACCCTA
3552 AACCCTA
1 AACCCTA
3559 AACCCTA
1 AACCCTA
3566 AACCCTA
1 AACCCTA
3573 AACCCTA
1 AACCCTA
3580 AACCCTA
1 AACCCTA
3587 AACCCTA
1 AACCCTA
3594 AACCCTA
1 AACCCTA
3601 AACCCTA
1 AACCCTA
3608 AACCCT-
1 AACCCTA
3614 AACCCTA
1 AACCCTA
3621 AACCCTA
1 AACCCTA
3628 AACCCTA
1 AACCCTA
3635 AACCCTA
1 AACCCTA
3642 AACCCTA
1 AACCCTA
3649 AACCCTA
1 AACCCTA
3656 AACCCTA
1 AACCCTA
3663 AACCCTA
1 AACCCTA
3670 AACCCTA
1 AACCCTA
3677 AACCCTA
1 AACCCTA
3684 AACCCTA
1 AACCCTA
3691 AACCCTA
1 AACCCTA
3698 AACCCTA
1 AACCCTA
3705 AACCC-A
1 AACCCTA
3711 AACCCTA
1 AACCCTA
3718 AACCCTA
1 AACCCTA
3725 AACCCTA
1 AACCCTA
3732 AACCCTA
1 AACCCTA
3739 AACCCTA
1 AACCCTA
3746 AACCCTA
1 AACCCTA
3753 AACCCTA
1 AACCCTA
3760 AACCCTA
1 AACCCTA
3767 AACCCT-
1 AACCCTA
3773 AACCCTA
1 AACCCTA
3780 AACCCTA
1 AACCCTA
3787 AACCCTA
1 AACCCTA
3794 AACCCTA
1 AACCCTA
3801 AACCCTA
1 AACCCTA
3808 AACCCTA
1 AACCCTA
3815 AACCCTA
1 AACCCTA
3822 AACCCTA
1 AACCCTA
3829 AACCCTA
1 AACCCTA
3836 AACCCTA
1 AACCCTA
3843 AACCCTA
1 AACCCTA
3850 AACCCTA
1 AACCCTA
3857 AACCCTA
1 AACCCTA
3864 AACCCTA
1 AACCCTA
3871 AACCCTA
1 AACCCTA
3878 AACCCTA
1 AACCCTA
3885 AACCCTA
1 AACCCTA
3892 AACCCTA
1 AACCCTA
3899 AACCCTA
1 AACCCTA
3906 AACCCTA
1 AACCCTA
3913 AACCCTA
1 AACCCTA
3920 AACCCTA
1 AACCCTA
3927 AACCCTA
1 AACCCTA
3934 AACCCTA
1 AACCCTA
3941 AACCCTA
1 AACCCTA
3948 AACCCTA
1 AACCCTA
3955 AACCCTA
1 AACCCTA
3962 AACCCT-
1 AACCCTA
3968 AACCCTA
1 AACCCTA
3975 AACCCTA
1 AACCCTA
3982 AACCCTA
1 AACCCTA
3989 AACCCTA
1 AACCCTA
3996 AACCC-A
1 AACCCTA
4002 AACCCTA
1 AACCCTA
4009 AACCCTA
1 AACCCTA
4016 AACCCTA
1 AACCCTA
4023 AACCCTA
1 AACCCTA
4030 AACCCTA
1 AACCCTA
4037 AACCCTA
1 AACCCTA
4044 AACCCTA
1 AACCCTA
4051 AACCCTA
1 AACCCTA
4058 AACCCTA
1 AACCCTA
4065 AACCCTA
1 AACCCTA
4072 AACCCTA
1 AACCCTA
4079 AACCCTA
1 AACCCTA
4086 AACCCTA
1 AACCCTA
4093 AACCCTA
1 AACCCTA
4100 AACCCTA
1 AACCCTA
4107 AACCCT-
1 AACCCTA
4113 AACCCTA
1 AACCCTA
4120 AACCCTA
1 AACCCTA
4127 AACCCTA
1 AACCCTA
4134 AACCCTA
1 AACCCTA
4141 AACCCTA
1 AACCCTA
4148 AACCCTA
1 AACCCTA
4155 AACCCTA
1 AACCCTA
4162 AACCCTA
1 AACCCTA
4169 AACCCTA
1 AACCCTA
4176 AACCCTA
1 AACCCTA
4183 AACCCTA
1 AACCCTA
4190 AACCCTA
1 AACCCTA
4197 AACCCTA
1 AACCCTA
4204 AACCCTA
1 AACCCTA
4211 AACCCTA
1 AACCCTA
4218 AACCCTA
1 AACCCTA
4225 AACCCTA
1 AACCCTA
4232 AACCCTA
1 AACCCTA
4239 AACCCTA
1 AACCCTA
4246 AACCCTA
1 AACCCTA
4253 AACCCTA
1 AACCCTA
4260 AACCCTA
1 AACCCTA
4267 AACCCTA
1 AACCCTA
4274 AACCCTA
1 AACCCTA
4281 AACCCTA
1 AACCCTA
4288 AACCCTA
1 AACCCTA
4295 AACCCTA
1 AACCCTA
4302 AACCCTA
1 AACCCTA
4309 AACCCTA
1 AACCCTA
4316 AACCCTA
1 AACCCTA
4323 AACCCTA
1 AACCCTA
4330 AACCCTA
1 AACCCTA
4337 AACCCTA
1 AACCCTA
4344 AACCCTA
1 AACCCTA
4351 AACCCTA
1 AACCCTA
4358 AACCCTA
1 AACCCTA
4365 AACCCT-
1 AACCCTA
4371 AACCCTA
1 AACCCTA
4378 AACCCTA
1 AACCCTA
4385 AACCCTA
1 AACCCTA
4392 AACCCTA
1 AACCCTA
4399 AACCCTA
1 AACCCTA
4406 AACCCTA
1 AACCCTA
4413 AACCCTA
1 AACCCTA
4420 AACCCTA
1 AACCCTA
4427 AACCCTA
1 AACCCTA
4434 AACCCTA
1 AACCCTA
4441 AACCCTA
1 AACCCTA
4448 AACCCTA
1 AACCCTA
4455 AACCCTA
1 AACCCTA
4462 AACCCT-
1 AACCCTA
4468 AACCCTA
1 AACCCTA
4475 AACCCTA
1 AACCCTA
4482 AACCCT-
1 AACCCTA
4488 AACCCTA
1 AACCCTA
4495 AACCCTA
1 AACCCTA
4502 AACCCTA
1 AACCCTA
4509 AACCCTA
1 AACCCTA
4516 AACCCTA
1 AACCCTA
4523 AACCCT-
1 AACCCTA
4529 AACCCTA
1 AACCCTA
4536 AACCCTA
1 AACCCTA
4543 AACCCTA
1 AACCCTA
4550 AACCCTA
1 AACCCTA
4557 AACCCTA
1 AACCCTA
4564 AACCCTA
1 AACCCTA
4571 AACCCTA
1 AACCCTA
4578 AACCCTA
1 AACCCTA
4585 AACCCTA
1 AACCCTA
4592 AACCCTA
1 AACCCTA
4599 AACCCTA
1 AACCCTA
4606 AACCCTA
1 AACCCTA
4613 AACCCT-
1 AACCCTA
4619 AACCCTA
1 AACCCTA
4626 AACCCTA
1 AACCCTA
4633 AACCCTA
1 AACCCTA
4640 AACCCTA
1 AACCCTA
4647 AACCCTA
1 AACCCTA
4654 AACCCTA
1 AACCCTA
4661 AACCCTA
1 AACCCTA
4668 AACCCTA
1 AACCCTA
4675 AACCCTA
1 AACCCTA
4682 AACCCTA
1 AACCCTA
4689 AACCCTA
1 AACCCTA
4696 AACCCTA
1 AACCCTA
4703 AACCCTA
1 AACCCTA
4710 AACCCTA
1 AACCCTA
4717 AACCCTA
1 AACCCTA
4724 AACCCTA
1 AACCCTA
4731 AACCCTA
1 AACCCTA
4738 AACCCTA
1 AACCCTA
4745 AACCCTA
1 AACCCTA
4752 AACCCTA
1 AACCCTA
4759 AACCCTA
1 AACCCTA
4766 AACCCTA
1 AACCCTA
4773 AA-CCTA
1 AACCCTA
4779 AACCCTA
1 AACCCTA
4786 AACCCTA
1 AACCCTA
4793 AACCCTA
1 AACCCTA
4800 AACCCTA
1 AACCCTA
4807 AACCCTA
1 AACCCTA
4814 AACCCTA
1 AACCCTA
4821 AACCCTA
1 AACCCTA
4828 AACCCTA
1 AACCCTA
4835 AACCCTA
1 AACCCTA
4842 AACCCTA
1 AACCCTA
4849 AACCCTA
1 AACCCTA
4856 AACCCTA
1 AACCCTA
4863 AACCCTA
1 AACCCTA
4870 AACCCTA
1 AACCCTA
4877 AACCCTA
1 AACCCTA
4884 AACCCTA
1 AACCCTA
4891 AACCCTA
1 AACCCTA
4898 AACCCTA
1 AACCCTA
4905 AACCCTA
1 AACCCTA
4912 AACCCTA
1 AACCCTA
4919 AACCCTA
1 AACCCTA
4926 AACCCTA
1 AACCCTA
4933 AACCCTA
1 AACCCTA
4940 AACCCTA
1 AACCCTA
4947 AACCCTA
1 AACCCTA
4954 AACCCTA
1 AACCCTA
4961 AACCCTA
1 AACCCTA
4968 AACCCTA
1 AACCCTA
4975 AACCCT-
1 AACCCTA
4981 AACCCT-
1 AACCCTA
4987 AACCCTA
1 AACCCTA
4994 AACCCTA
1 AACCCTA
5001 AACCCTA
1 AACCCTA
5008 AACCCTA
1 AACCCTA
5015 AACCCTA
1 AACCCTA
5022 AACCCTA
1 AACCCTA
5029 AACCCTA
1 AACCCTA
5036 AACCCTA
1 AACCCTA
5043 AACCCTA
1 AACCCTA
5050 AA-CCT-
1 AACCCTA
5055 -ACCCTA
1 AACCCTA
5061 AACCCTA
1 AACCCTA
5068 AACCCTA
1 AACCCTA
5075 AACCCTA
1 AACCCTA
5082 AACCCT-
1 AACCCTA
5088 AACCCTA
1 AACCCTA
5095 AACCCTA
1 AACCCTA
5102 AACCCTA
1 AACCCTA
5109 AACCCTA
1 AACCCTA
5116 AACCCTA
1 AACCCTA
5123 AACCCTA
1 AACCCTA
5130 AACCCTA
1 AACCCTA
5137 AACCCTA
1 AACCCTA
5144 AACCCTA
1 AACCCTA
5151 AACCCTA
1 AACCCTA
5158 AACCCTA
1 AACCCTA
5165 AACCCTA
1 AACCCTA
5172 AACCCTA
1 AACCCTA
5179 AACCCTA
1 AACCCTA
5186 AACCCTA
1 AACCCTA
5193 AACCCTA
1 AACCCTA
5200 AACCCTA
1 AACCCTA
5207 AACCCTA
1 AACCCTA
5214 AACCCTA
1 AACCCTA
5221 AACCCTA
1 AACCCTA
5228 AACCCTA
1 AACCCTA
5235 AACCCTA
1 AACCCTA
5242 AACCCTA
1 AACCCTA
5249 AACCCTA
1 AACCCTA
5256 AACCCTA
1 AACCCTA
5263 AACCCTA
1 AACCCTA
5270 AACCCTA
1 AACCCTA
5277 AACCCTA
1 AACCCTA
5284 AACCCTA
1 AACCCTA
5291 AACCCTA
1 AACCCTA
5298 AACCCTA
1 AACCCTA
5305 AACCCTA
1 AACCCTA
5312 AACCCT-
1 AACCCTA
5318 AACCCTA
1 AACCCTA
5325 AACCCTA
1 AACCCTA
5332 AACCCTA
1 AACCCTA
5339 AA-CCTA
1 AACCCTA
5345 AACCCTA
1 AACCCTA
5352 AACCCTA
1 AACCCTA
5359 AACCCTA
1 AACCCTA
5366 AACCCT-
1 AACCCTA
5372 AACCCTA
1 AACCCTA
5379 AACCCTA
1 AACCCTA
5386 AACCCTA
1 AACCCTA
5393 AACCCTA
1 AACCCTA
5400 AACCCTA
1 AACCCTA
5407 AACCCT-
1 AACCCTA
5413 AACCCTA
1 AACCCTA
5420 AACCCTA
1 AACCCTA
5427 AACCCTA
1 AACCCTA
5434 AACCCTA
1 AACCCTA
5441 AACCCTA
1 AACCCTA
5448 AACCCTA
1 AACCCTA
5455 AACCC-A
1 AACCCTA
5461 AACCCTA
1 AACCCTA
5468 AACCCTA
1 AACCCTA
5475 AACCCTA
1 AACCCTA
5482 AACCCTA
1 AACCCTA
5489 AACCCTA
1 AACCCTA
5496 AACCCTA
1 AACCCTA
5503 AACCCTA
1 AACCCTA
5510 AACCCTA
1 AACCCTA
5517 AACCCTA
1 AACCCTA
5524 AACCCTA
1 AACCCTA
5531 AACCCTA
1 AACCCTA
5538 AACCCTA
1 AACCCTA
5545 AACCCTA
1 AACCCTA
5552 AACCCTA
1 AACCCTA
5559 AACCCTA
1 AACCCTA
5566 AACCCTA
1 AACCCTA
5573 AACCCT-
1 AACCCTA
5579 AACCCTA
1 AACCCTA
5586 AACCCTA
1 AACCCTA
5593 AACCCTA
1 AACCCTA
5600 AACCCTA
1 AACCCTA
5607 AA-CCT-
1 AACCCTA
5612 AACCCT-
1 AACCCTA
5618 AACCCTA
1 AACCCTA
5625 AACCCTA
1 AACCCTA
5632 AACCCTA
1 AACCCTA
5639 AACCCT-
1 AACCCTA
5645 AACCCTA
1 AACCCTA
5652 AACCCTA
1 AACCCTA
5659 AACCCTA
1 AACCCTA
5666 AACCCTA
1 AACCCTA
5673 AACCCTA
1 AACCCTA
5680 AACCCTA
1 AACCCTA
5687 AACCCTA
1 AACCCTA
5694 AACCCTA
1 AACCCTA
5701 AACCCTA
1 AACCCTA
5708 AACCCTA
1 AACCCTA
5715 AACCCTA
1 AACCCTA
5722 AACCCTA
1 AACCCTA
5729 AACCCTA
1 AACCCTA
5736 AACCCTA
1 AACCCTA
5743 AACCCTA
1 AACCCTA
5750 AACCCTA
1 AACCCTA
5757 AACCCTA
1 AACCCTA
5764 AACCCTA
1 AACCCTA
5771 AACCCTA
1 AACCCTA
5778 AACCCTA
1 AACCCTA
5785 AA-CCTA
1 AACCCTA
5791 AACCCTA
1 AACCCTA
5798 AACCCTA
1 AACCCTA
5805 AACCCTA
1 AACCCTA
5812 AACCCTA
1 AACCCTA
5819 AACCCTA
1 AACCCTA
5826 AACCCT-
1 AACCCTA
*
5832 AACCCGA
1 AACCCTA
5839 AACCCTA
1 AACCCTA
5846 AACCCTA
1 AACCCTA
5853 AACCCTA
1 AACCCTA
5860 AACCCTA
1 AACCCTA
5867 AACCCTA
1 AACCCTA
5874 AACCCTA
1 AACCCTA
5881 AACCCTA
1 AACCCTA
5888 AACCCTA
1 AACCCTA
5895 AACCCTA
1 AACCCTA
5902 AACCCTA
1 AACCCTA
5909 AACCCTA
1 AACCCTA
5916 AACCCTA
1 AACCCTA
5923 AACCCTA
1 AACCCTA
5930 AACCCTA
1 AACCCTA
5937 AACCCTA
1 AACCCTA
5944 AACCCTA
1 AACCCTA
5951 AACCCTA
1 AACCCTA
5958 AACCCTA
1 AACCCTA
5965 AACCCTA
1 AACCCTA
5972 AACCCTA
1 AACCCTA
5979 AA-CC-A
1 AACCCTA
5984 AACCCTA
1 AACCCTA
5991 AACCCTA
1 AACCCTA
5998 AACCCTA
1 AACCCTA
6005 AACCCTA
1 AACCCTA
6012 AACCCTA
1 AACCCTA
6019 AACCCTA
1 AACCCTA
6026 AACCCTA
1 AACCCTA
6033 AACCCTA
1 AACCCTA
6040 AACCCTA
1 AACCCTA
6047 AACCCTA
1 AACCCTA
6054 AA-CCTA
1 AACCCTA
6060 AACCCTA
1 AACCCTA
6067 AACCCTA
1 AACCCTA
6074 AACCCT-
1 AACCCTA
6080 AACCCTA
1 AACCCTA
6087 AACCCTA
1 AACCCTA
6094 AACCCTA
1 AACCCTA
6101 AACCCTA
1 AACCCTA
6108 AACCCTA
1 AACCCTA
6115 AACCCTA
1 AACCCTA
6122 AACCCTA
1 AACCCTA
6129 AACCCTA
1 AACCCTA
6136 AACCCTA
1 AACCCTA
6143 AACCCTA
1 AACCCTA
6150 AACCCTA
1 AACCCTA
6157 AACCCTA
1 AACCCTA
6164 AACCCTA
1 AACCCTA
6171 AACCCTA
1 AACCCTA
6178 AACCCTA
1 AACCCTA
6185 AACCCTA
1 AACCCTA
6192 AACCCTA
1 AACCCTA
6199 AACCCTA
1 AACCCTA
6206 AACCCTA
1 AACCCTA
6213 AACCCTA
1 AACCCTA
6220 AACCCTA
1 AACCCTA
6227 AACCCTA
1 AACCCTA
6234 AACCCTA
1 AACCCTA
6241 AACCCTA
1 AACCCTA
6248 AACCCTA
1 AACCCTA
6255 AACCCTA
1 AACCCTA
6262 AACCCTA
1 AACCCTA
6269 AACCCTA
1 AACCCTA
6276 AACCCTA
1 AACCCTA
6283 AACCCTA
1 AACCCTA
6290 AACCCTA
1 AACCCTA
6297 AACCCTA
1 AACCCTA
6304 AA-CCT-
1 AACCCTA
6309 AACCCTA
1 AACCCTA
6316 AACCCTA
1 AACCCTA
6323 AA-CCTA
1 AACCCTA
6329 AACCCTA
1 AACCCTA
6336 AACCCTA
1 AACCCTA
6343 AACCCT-
1 AACCCTA
6349 AACCCTA
1 AACCCTA
6356 AACCCTA
1 AACCCTA
6363 AACCCTA
1 AACCCTA
6370 AACCCTA
1 AACCCTA
6377 AACCCTA
1 AACCCTA
6384 AACCCTA
1 AACCCTA
6391 AACCCT-
1 AACCCTA
6397 AACCCTA
1 AACCCTA
6404 AACCCTA
1 AACCCTA
6411 AACCCTA
1 AACCCTA
6418 AACCCTA
1 AACCCTA
6425 AACCCTA
1 AACCCTA
6432 AACCCTA
1 AACCCTA
6439 AACCCTA
1 AACCCTA
6446 AACCCTA
1 AACCCTA
6453 AACCCTA
1 AACCCTA
6460 AACCCTA
1 AACCCTA
6467 AACCCTA
1 AACCCTA
6474 AACCCTA
1 AACCCTA
6481 AACCCTA
1 AACCCTA
6488 AACCCTA
1 AACCCTA
6495 AACCCTA
1 AACCCTA
6502 AACCC--
1 AACCCTA
6507 AACCCTA
1 AACCCTA
6514 AACCCTA
1 AACCCTA
6521 AACCCTA
1 AACCCTA
6528 AACCCTA
1 AACCCTA
6535 AACCCTA
1 AACCCTA
6542 AACCCTA
1 AACCCTA
6549 AACCCTA
1 AACCCTA
6556 AACCCTA
1 AACCCTA
6563 AACCCTA
1 AACCCTA
6570 AACCCTA
1 AACCCTA
6577 AACCCTA
1 AACCCTA
6584 AACCCTA
1 AACCCTA
6591 AACCCTA
1 AACCCTA
6598 AACCCTA
1 AACCCTA
6605 AACCCTA
1 AACCCTA
6612 AACCCTA
1 AACCCTA
6619 AACCCTA
1 AACCCTA
6626 AACCCTA
1 AACCCTA
6633 AACCCTA
1 AACCCTA
6640 AACCCTA
1 AACCCTA
6647 AACCCTA
1 AACCCTA
6654 AACCCTA
1 AACCCTA
6661 AACCCTA
1 AACCCTA
6668 AACCCTA
1 AACCCTA
6675 AACCCTA
1 AACCCTA
6682 AACCCTA
1 AACCCTA
6689 AACCCTA
1 AACCCTA
6696 AACCCTA
1 AACCCTA
6703 AACCCTA
1 AACCCTA
6710 AACCCTA
1 AACCCTA
6717 AACCCTA
1 AACCCTA
6724 AACCCTA
1 AACCCTA
6731 AACCCTA
1 AACCCTA
6738 AACCCTA
1 AACCCTA
6745 AACCCTA
1 AACCCTA
6752 AACCCTA
1 AACCCTA
6759 AACCCTA
1 AACCCTA
6766 AACCCTA
1 AACCCTA
6773 AACCCTA
1 AACCCTA
6780 AACCCTA
1 AACCCTA
6787 AACCCTA
1 AACCCTA
6794 AACCCTA
1 AACCCTA
6801 AACCCTA
1 AACCCTA
6808 AACCCT-
1 AACCCTA
6814 AACCCTA
1 AACCCTA
6821 AACCCTA
1 AACCCTA
6828 AACCCTA
1 AACCCTA
6835 AA-CCTA
1 AACCCTA
6841 AACCCTA
1 AACCCTA
6848 AACCCTA
1 AACCCTA
6855 AACCCTA
1 AACCCTA
6862 AACCCTA
1 AACCCTA
6869 AACCCTA
1 AACCCTA
6876 AACCCTA
1 AACCCTA
6883 AACCCTA
1 AACCCTA
6890 AA-CCTA
1 AACCCTA
6896 AACCCTA
1 AACCCTA
6903 AACCCTA
1 AACCCTA
6910 AACCCTA
1 AACCCTA
6917 AACCCTA
1 AACCCTA
6924 AACCCTA
1 AACCCTA
6931 AACCCT-
1 AACCCTA
6937 AACCCTA
1 AACCCTA
6944 AACCCTA
1 AACCCTA
6951 AACCCTA
1 AACCCTA
6958 AACCCTA
1 AACCCTA
6965 AACCCT-
1 AACCCTA
6971 AACCCTA
1 AACCCTA
6978 AACCCTA
1 AACCCTA
6985 AACCCTA
1 AACCCTA
6992 AACCCTA
1 AACCCTA
6999 AACCCTA
1 AACCCTA
7006 AACCCTA
1 AACCCTA
7013 AACCCTA
1 AACCCTA
7020 AACCCTA
1 AACCCTA
7027 AACCCTA
1 AACCCTA
7034 AACCCTA
1 AACCCTA
7041 AACCCTA
1 AACCCTA
7048 AACCCTA
1 AACCCTA
7055 AACCCTA
1 AACCCTA
7062 AACCCTA
1 AACCCTA
7069 AACCCTA
1 AACCCTA
7076 AACCCTA
1 AACCCTA
7083 AACCCTA
1 AACCCTA
7090 AACCCTA
1 AACCCTA
7097 AACCCTA
1 AACCCTA
7104 AACCCTA
1 AACCCTA
7111 AACCCTA
1 AACCCTA
7118 AACCCTA
1 AACCCTA
7125 AACCCTA
1 AACCCTA
7132 AACCCTA
1 AACCCTA
7139 AACCCTA
1 AACCCTA
*
7146 AACCCGA
1 AACCCTA
7153 AACCCTA
1 AACCCTA
7160 AACCCTA
1 AACCCTA
7167 AACCCTA
1 AACCCTA
7174 AACCCTA
1 AACCCTA
7181 AACCCTA
1 AACCCTA
7188 AACCCTA
1 AACCCTA
7195 AACCCTA
1 AACCCTA
7202 AACCCT-
1 AACCCTA
7208 AACCCTA
1 AACCCTA
7215 AACCCTA
1 AACCCTA
7222 AACCCTA
1 AACCCTA
7229 AACCCTA
1 AACCCTA
7236 AACCCTA
1 AACCCTA
7243 AACCCTA
1 AACCCTA
7250 AACCCTA
1 AACCCTA
7257 AACCCTA
1 AACCCTA
7264 AACCCTA
1 AACCCTA
7271 AACCCT-
1 AACCCTA
7277 AACCCTA
1 AACCCTA
7284 AACCCT-
1 AACCCTA
7290 AACCCTA
1 AACCCTA
7297 AACCCTA
1 AACCCTA
7304 AACCCTA
1 AACCCTA
7311 AACCCTA
1 AACCCTA
7318 AACCCTA
1 AACCCTA
7325 AACCCTA
1 AACCCTA
7332 AACCCTA
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1 AACCCTA
14889 AACCCT-
1 AACCCTA
14895 AACCCTA
1 AACCCTA
14902 AACCCTA
1 AACCCTA
14909 AACCCTA
1 AACCCTA
14916 AACCCTA
1 AACCCTA
14923 AACCCTA
1 AACCCTA
14930 AACCCTA
1 AACCCTA
14937 AACCCTA
1 AACCCTA
14944 AACCCTA
1 AACCCTA
14951 AACCCTA
1 AACCCTA
14958 AACCCTA
1 AACCCTA
14965 AACCCTA
1 AACCCTA
14972 AACCCTA
1 AACCCTA
14979 AACCCTA
1 AACCCTA
14986 AACCCTA
1 AACCCTA
14993 AACCCTA
1 AACCCTA
15000 AACCCTA
1 AACCCTA
15007 AACCCTA
1 AACCCTA
15014 AACCCTA
1 AACCCTA
15021 AACCCTA
1 AACCCTA
15028 AACCCTA
1 AACCCTA
15035 AACCCTA
1 AACCCTA
15042 AACCCTA
1 AACCCTA
15049 AACCCTA
1 AACCCTA
15056 AACCCTA
1 AACCCTA
15063 AACCCTA
1 AACCCTA
15070 AACCCTA
1 AACCCTA
15077 AACCCTA
1 AACCCTA
15084 AACCCTA
1 AACCCTA
15091 AACCCTA
1 AACCCTA
15098 AACCCTA
1 AACCCTA
15105 AACCCTA
1 AACCCTA
15112 AACCCTA
1 AACCCTA
15119 AACCCTA
1 AACCCTA
15126 AACCCTA
1 AACCCTA
15133 AACCCTA
1 AACCCTA
15140 AACCCTA
1 AACCCTA
15147 AACCCTA
1 AACCCTA
15154 AACCCTA
1 AACCCTA
15161 AACCCTA
1 AACCCTA
15168 AACCCTA
1 AACCCTA
15175 AACCCTA
1 AACCCTA
15182 AACCCTA
1 AACCCTA
15189 AACCCTA
1 AACCCTA
15196 AACCCTA
1 AACCCTA
15203 AACCCTA
1 AACCCTA
15210 AACCCT-
1 AACCCTA
15216 AACCCTA
1 AACCCTA
15223 AACCCTA
1 AACCCTA
15230 AACCCTA
1 AACCCTA
15237 AACCCTA
1 AACCCTA
15244 AACCCTA
1 AACCCTA
15251 AACCCTA
1 AACCCTA
15258 AACCCTA
1 AACCCTA
15265 AACCCTA
1 AACCCTA
15272 AACCCTA
1 AACCCTA
15279 AACCCTA
1 AACCCTA
15286 AACCCTA
1 AACCCTA
15293 AACCCTA
1 AACCCTA
15300 AACCCTA
1 AACCCTA
15307 AACCCTA
1 AACCCTA
15314 AACCCTA
1 AACCCTA
15321 AACCCTA
1 AACCCTA
15328 AACCCTA
1 AACCCTA
15335 AACCCTA
1 AACCCTA
15342 AACCCTA
1 AACCCTA
15349 AACCCTA
1 AACCCTA
15356 AACCCTA
1 AACCCTA
15363 AACCCTA
1 AACCCTA
15370 AACCCTA
1 AACCCTA
15377 AACCCTA
1 AACCCTA
15384 AACCCTA
1 AACCCTA
15391 AACCCTA
1 AACCCTA
15398 AACCCTA
1 AACCCTA
15405 AACCCTA
1 AACCCTA
15412 AACCCTA
1 AACCCTA
15419 AACCCTA
1 AACCCTA
15426 AACCCTA
1 AACCCTA
15433 AACCCTA
1 AACCCTA
15440 AACCCTA
1 AACCCTA
15447 AACCCTA
1 AACCCTA
15454 AACCCTA
1 AACCCTA
15461 AACCCTA
1 AACCCTA
15468 AACCCT-
1 AACCCTA
15474 AACCCTA
1 AACCCTA
15481 AACCCCCTA
1 AA--CCCTA
*
15490 ACCCCT-
1 AACCCTA
15496 AACCCT-
1 AACCCTA
15502 AACCCTA
1 AACCCTA
*
15509 AGCCCTA
1 AACCCTA
*
15516 AGCCCTA
1 AACCCTA
*
15523 AGCCCTA
1 AACCCTA
*
15530 AGCCC-A
1 AACCCTA
* *
15536 ACCCCCA
1 AACCCTA
*
15543 ACCCCT-
1 AACCCTA
15549 AA-CCTA
1 AACCCTA
*
15555 AGCCCTA
1 AACCCTA
*
15562 AGCCCTA
1 AACCCTA
*
15569 AGCCCTA
1 AACCCTA
*
15576 AGCCCTA
1 AACCCTA
*
15583 AGCCCTA
1 AACCCTA
*
15590 AGCCCTA
1 AACCCTA
*
15597 AGCCCTA
1 AACCCTA
*
15604 AGCCCTA
1 AACCCTA
*
15611 AGCCCTA
1 AACCCTA
*
15618 AGCCCTA
1 AACCCTA
*
15625 AGCCCTA
1 AACCCTA
*
15632 AGCCCTA
1 AACCCTA
*
15639 AGCCCTA
1 AACCCTA
*
15646 AGCCCTA
1 AACCCTA
*
15653 AGCCCTA
1 AACCCTA
*
15660 AGCCCTA
1 AACCCTA
*
15667 AGCCCTA
1 AACCCTA
*
15674 AGCCCTA
1 AACCCTA
*
15681 AGCCCTA
1 AACCCTA
*
15688 AGCCCTA
1 AACCCTA
*
15695 AGCCCTA
1 AACCCTA
*
15702 AGCCCTA
1 AACCCTA
*
15709 AGCCCTA
1 AACCCTA
*
15716 AGCCCTA
1 AACCCTA
*
15723 AGCCCTA
1 AACCCTA
*
15730 AGCCCTA
1 AACCCTA
*
15737 AGCCCTA
1 AACCCTA
*
15744 AGCCCTA
1 AACCCTA
*
15751 AGCCCTA
1 AACCCTA
*
15758 AGCCCTA
1 AACCCTA
*
15765 AGCCCTA
1 AACCCTA
*
15772 AGCCCTA
1 AACCCTA
*
15779 AGCCCTA
1 AACCCTA
*
15786 AGCCCTA
1 AACCCTA
*
15793 AGCCCTA
1 AACCCTA
*
15800 AGCCCTA
1 AACCCTA
*
15807 AGCCCTA
1 AACCCTA
*
15814 AGCCCTA
1 AACCCTA
15821 AACCCTA
1 AACCCTA
15828 AACCCTA
1 AACCCTA
15835 AACCCTA
1 AACCCTA
* *
15842 GACCCTG
1 AACCCTA
* *
15849 GACCCTG
1 AACCCTA
* *
15856 GACCCTG
1 AACCCTA
*
15863 GACCCTGA
1 AACCCT-A
*
15871 ACCCCT-
1 AACCCTA
15877 AACCC-A
1 AACCCTA
*
15883 AGCCCTA
1 AACCCTA
*
15890 AGCCCTA
1 AACCCTA
*
15897 AGCCCTA
1 AACCCTA
*
15904 AGCCCTA
1 AACCCTA
*
15911 AGCCCTA
1 AACCCTA
*
15918 AGCCC-A
1 AACCCTA
* *
15924 ACCCCCA
1 AACCCTA
*
15931 ACCCCT-
1 AACCCTA
15937 AA-CCTA
1 AACCCTA
*
15943 AGCCCTA
1 AACCCTA
*
15950 AGCCCTA
1 AACCCTA
*
15957 AGCCCTA
1 AACCCTA
*
15964 AGCCCT-
1 AACCCTA
*
15970 AAGCCTA
1 AACCCTA
*
15977 AGCCCTA
1 AACCCTA
*
15984 AGCCCTA
1 AACCCTA
*
15991 AGCCCTA
1 AACCCTA
*
15998 AGCCCTA
1 AACCCTA
*
16005 AGCCCTA
1 AACCCTA
*
16012 AGCCCTA
1 AACCCTA
*
16019 AGCCCTA
1 AACCCTA
*
16026 AGCCCTA
1 AACCCTA
*
16033 AGCCCTA
1 AACCCTA
*
16040 AGCCCTA
1 AACCCTA
*
16047 AGCCCTA
1 AACCCTA
*
16054 AGCCCTA
1 AACCCTA
*
16061 AGCCCTA
1 AACCCTA
*
16068 AGCCCTA
1 AACCCTA
16075 AACCCTA
1 AACCCTA
16082 AACCCTA
1 AACCCTA
16089 AACCCTA
1 AACCCTA
16096 AACCCTA
1 AACCCTA
16103 AACCCTA
1 AACCCTA
16110 AACCCTA
1 AACCCTA
*
16117 AACTCTA
1 AACCCTA
16124 AAC
1 AAC
16127 ACCGAGCCCC
Statistics
Matches: 15750, Mismatches: 116, Indels: 506
0.96 0.01 0.03
Matches are distributed among these distances:
4 13 0.00
5 113 0.01
6 1161 0.07
7 14396 0.91
8 42 0.00
9 25 0.00
ACGTcount: A:0.42, C:0.43, G:0.01, T:0.14
Consensus pattern (7 bp):
AACCCTA
Found at i:16138 original size:7 final size:7
Alignment explanation
Indices: 16128--16173 Score: 92
Period size: 7 Copynumber: 6.6 Consensus size: 7
16118 ACTCTAAACA
16128 CCGAGCC
1 CCGAGCC
16135 CCGAGCC
1 CCGAGCC
16142 CCGAGCC
1 CCGAGCC
16149 CCGAGCC
1 CCGAGCC
16156 CCGAGCC
1 CCGAGCC
16163 CCGAGCC
1 CCGAGCC
16170 CCGA
1 CCGA
16174 CTTCCTGCAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.15, C:0.57, G:0.28, T:0.00
Consensus pattern (7 bp):
CCGAGCC
Found at i:21641 original size:21 final size:21
Alignment explanation
Indices: 21617--21657 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
21607 AGTAAATCAA
*
21617 CAAATGAGTCAAATGACACCG
1 CAAATAAGTCAAATGACACCG
*
21638 CAAATAAGTCCAATGACACC
1 CAAATAAGTCAAATGACACC
21658 AGCAGAGGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.27, G:0.15, T:0.15
Consensus pattern (21 bp):
CAAATAAGTCAAATGACACCG
Found at i:37799 original size:21 final size:21
Alignment explanation
Indices: 37775--37814 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
37765 AAACCCTAAA
*
37775 AAAACCCTTGTAAATCCTTGC
1 AAAACCCTTGTAAACCCTTGC
*
37796 AAAATCCTTGTAAACCCTT
1 AAAACCCTTGTAAACCCTT
37815 ATAAACCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (21 bp):
AAAACCCTTGTAAACCCTTGC
Found at i:39174 original size:10 final size:10
Alignment explanation
Indices: 37847--39331 Score: 904
Period size: 10 Copynumber: 150.5 Consensus size: 10
37837 AAACCCTTTC
37847 AAACCCTTA-T
1 AAACCC-TAGT
37857 AAACCCTAG-
1 AAACCCTAGT
* **
37866 AAAACCTAAC
1 AAACCCTAGT
* *
37876 AAACACTTGT
1 AAACCCTAGT
37886 AAACCCTA-T
1 AAACCCTAGT
37895 AAACCCTTA-T
1 AAACCC-TAGT
37905 AAACCCTAGT
1 AAACCCTAGT
*
37915 AAACCTTTA-T
1 AAACC-CTAGT
*
37925 AAACCCTATT
1 AAACCCTAGT
*
37935 AAGCCCTA--
1 AAACCCTAGT
* ** *
37943 ATACTTTATT
1 AAACCCTAGT
*
37953 AAACTCTTA-T
1 AAAC-CCTAGT
*
37963 AAACCCTATT
1 AAACCCTAGT
37973 AAACCCCCTTA-T
1 AAA--CCC-TAGT
*
37985 AAA-CCTAATT
1 AAACCCT-AGT
37995 AAACCCT--T
1 AAACCCTAGT
38003 AAAACCCTAGT
1 -AAACCCTAGT
38014 AAACCCTTA-T
1 AAACCC-TAGT
38024 AAACCCTAGT
1 AAACCCTAGT
38034 AAACCCTA-T
1 AAACCCTAGT
38043 CAAACCCTA-T
1 -AAACCCTAGT
* *
38053 CAAACACTAAT
1 -AAACCCTAGT
*
38064 AAACCATTA-T
1 AAACC-CTAGT
*
38074 AAACCCTTGT
1 AAACCCTAGT
*
38084 AAA--CTATT
1 AAACCCTAGT
38092 ACAAACCCTAGT
1 --AAACCCTAGT
*
38104 AAACCCTAAT
1 AAACCCTAGT
** *
38114 AAATACTAAT
1 AAACCCTAGT
* *
38124 AAATCCTAGA
1 AAACCCTAGT
*
38134 AAATCCTTA-T
1 AAA-CCCTAGT
38144 AAACCCTAGT
1 AAACCCTAGT
* *
38154 AACCCCTAAT
1 AAACCCTAGT
**
38164 AAACCCTAAC
1 AAACCCTAGT
* *
38174 AAACCTTA-A
1 AAACCCTAGT
*
38183 AAACCCTAGG
1 AAACCCTAGT
**
38193 AAACCCTAAC
1 AAACCCTAGT
38203 AAACCCTAGT
1 AAACCCTAGT
*
38213 AAATCCTTA-T
1 AAA-CCCTAGT
38223 AAACCCTA--
1 AAACCCTAGT
*
38231 AAAACCTAAGT
1 AAACCCT-AGT
38242 AAACCCTAGT
1 AAACCCTAGT
*
38252 AAACCTTAGT
1 AAACCCTAGT
*
38262 AAACCCTAAT
1 AAACCCTAGT
38272 AAACCCATA-T
1 AAACCC-TAGT
* *
38282 AAAGCCTTGT
1 AAACCCTAGT
*
38292 AAACCCTAGC
1 AAACCCTAGT
*
38302 AAACCATTA-T
1 AAACC-CTAGT
* *
38312 AAAATCATAGT
1 -AAACCCTAGT
38323 AAACCCTAAG-
1 AAACCCT-AGT
*
38333 AAACCCTTA-C
1 AAACCC-TAGT
38343 AAACCCATA-T
1 AAACCC-TAGT
***
38353 AAAGGGTA-T
1 AAACCCTAGT
*
38362 AAGCCCTAAG-
1 AAACCCT-AGT
* *
38372 AAATCCTTA-C
1 AAA-CCCTAGT
*
38382 AAACCCTTGT
1 AAACCCTAGT
* *
38392 AAACTCTAGC
1 AAACCCTAGT
38402 AAACCCTA-T
1 AAACCCTAGT
38411 AAACCCTA-T
1 AAACCCTAGT
*
38420 TAACACCTA-T
1 AAAC-CCTAGT
*
38430 AAA-CCTATT
1 AAACCCTAGT
38439 AAACCCTTA-T
1 AAACCC-TAGT
38449 AAACCCTAGT
1 AAACCCTAGT
38459 AAACCCTTA-T
1 AAACCC-TAGT
*
38469 AAACCCTAAT
1 AAACCCTAGT
38479 AAACCCTTA-T
1 AAACCC-TAGT
*
38489 AAACCCTAAT
1 AAACCCTAGT
*
38499 AACCCCTAGT
1 AAACCCTAGT
*
38509 AAACCCTAAT
1 AAACCCTAGT
38519 -AACCCTAGT
1 AAACCCTAGT
*
38528 AAACCCTAAT
1 AAACCCTAGT
*
38538 AAACCCTAGC
1 AAACCCTAGT
* *
38548 AAACCTTAAT
1 AAACCCTAGT
* *
38558 AAATCCTAAT
1 AAACCCTAGT
* *
38568 AAACCTTAAT
1 AAACCCTAGT
**
38578 AAACCCTAAA
1 AAACCCTAGT
*
38588 AAACCCTAAT
1 AAACCCTAGT
*
38598 AAACCCTAAT
1 AAACCCTAGT
38608 AAACCCTAGT
1 AAACCCTAGT
38618 AAACCCTA-T
1 AAACCCTAGT
38627 AAACCCTA-T
1 AAACCCTAGT
38636 AAACCCTAGT
1 AAACCCTAGT
38646 AAACCCTA-T
1 AAACCCTAGT
38655 AAA-CCTAGT
1 AAACCCTAGT
38664 AAA-CCTA-T
1 AAACCCTAGT
38672 AAACCCTAGT
1 AAACCCTAGT
38682 AAACCCTAGT
1 AAACCCTAGT
* *
38692 ATACCCTAAT
1 AAACCCTAGT
*
38702 AAACCCTAAT
1 AAACCCTAGT
*
38712 AAACCCTAAT
1 AAACCCTAGT
*
38722 AAACCTTAGT
1 AAACCCTAGT
*
38732 TAACCCTTA-T
1 AAACCC-TAGT
38742 AAACCCTAGT
1 AAACCCTAGT
38752 AAACCCTTA-T
1 AAACCC-TAGT
* *
38762 AAACCTTAAT
1 AAACCCTAGT
*
38772 AAATCCTTA-T
1 AAA-CCCTAGT
*
38782 AAACCCTAAT
1 AAACCCTAGT
* *
38792 AAACTCTTG-
1 AAACCCTAGT
*
38801 AAACCATAGT
1 AAACCCTAGT
38811 AAACCCTAGT
1 AAACCCTAGT
** *
38821 TTACCCTAAT
1 AAACCCTAGT
*
38831 AAACCCTTGT
1 AAACCCTAGT
* *
38841 AAACTCTTGT
1 AAACCCTAGT
38851 AAACCCTTA-T
1 AAACCC-TAGT
38861 AAACCCTAGT
1 AAACCCTAGT
**
38871 AAAATCTAGT
1 AAACCCTAGT
38881 AAACCCTTA-T
1 AAACCC-TAGT
*
38891 ATACCCTTA-T
1 AAACCC-TAGT
*
38901 AACCCCTTA-T
1 AAACCC-TAGT
* * *
38911 ATACTCTTGT
1 AAACCCTAGT
38921 AAACCCTAGT
1 AAACCCTAGT
38931 AAACCCTTA-T
1 AAACCC-TAGT
38941 AAACCCTAGT
1 AAACCCTAGT
38951 AAACCCTTA-T
1 AAACCC-TAGT
38961 AAACCCTAGT
1 AAACCCTAGT
**
38971 GTACCCTAGT
1 AAACCCTAGT
*
38981 ATACCCTAGT
1 AAACCCTAGT
*
38991 AAACTCTAGT
1 AAACCCTAGT
*
39001 TAACCCTTA-T
1 AAACCC-TAGT
* *
39011 AAACCTTAAT
1 AAACCCTAGT
*
39021 AAACCCTTG-
1 AAACCCTAGT
39030 AACACCCTAGT
1 AA-ACCCTAGT
*
39041 ACACCCTAGT
1 AAACCCTAGT
*
39051 ATACCCTAGT
1 AAACCCTAGT
*
39061 ATACCCTAGT
1 AAACCCTAGT
*
39071 AAACCCTAAT
1 AAACCCTAGT
*
39081 AAATCCTA-T
1 AAACCCTAGT
39090 AAA-CCTA-T
1 AAACCCTAGT
*
39098 AAACCCTTGT
1 AAACCCTAGT
*
39108 AAACTCTTA-T
1 AAAC-CCTAGT
39118 AAACCCTAGT
1 AAACCCTAGT
* *
39128 AAACCATAAT
1 AAACCCTAGT
39138 AAACCC-AGT
1 AAACCCTAGT
39147 AAA-CCTCAGT
1 AAACCCT-AGT
39157 AAGA-CCTAGT
1 AA-ACCCTAGT
39167 AAACCCTAGT
1 AAACCCTAGT
*** *
39177 AAATTATTGT
1 AAACCCTAGT
39187 AAACCCTAGT
1 AAACCCTAGT
* *
39197 AAATCATAGT
1 AAACCCTAGT
39207 AAACCCTTA-T
1 AAACCC-TAGT
* *
39217 AAATCCTAAT
1 AAACCCTAGT
39227 AAACCCTAGT
1 AAACCCTAGT
* *
39237 AAACCTTAAT
1 AAACCCTAGT
*
39247 ACACCCTAGT
1 AAACCCTAGT
39257 AAACCCTAGT
1 AAACCCTAGT
*
39267 ACACCCTAGT
1 AAACCCTAGT
39277 AAACCCTAGT
1 AAACCCTAGT
*
39287 AAACCCTAAT
1 AAACCCTAGT
* *
39297 AAACACTTGT
1 AAACCCTAGT
*
39307 AAATCCTAGT
1 AAACCCTAGT
*
39317 AATCCCTAGT
1 AAACCCTAGT
39327 AAACC
1 AAACC
39332 TTAACCCTAA
Statistics
Matches: 1176, Mismatches: 207, Indels: 184
0.75 0.13 0.12
Matches are distributed among these distances:
8 37 0.03
9 170 0.14
10 881 0.75
11 75 0.06
12 11 0.01
13 2 0.00
ACGTcount: A:0.42, C:0.28, G:0.05, T:0.25
Consensus pattern (10 bp):
AAACCCTAGT
Found at i:41478 original size:37 final size:37
Alignment explanation
Indices: 41426--41519 Score: 170
Period size: 37 Copynumber: 2.5 Consensus size: 37
41416 TTTAGTTTTT
* *
41426 TTTTTCATTTTATCATCATTCTAAAAATATTTATTTA
1 TTTTTAATTTCATCATCATTCTAAAAATATTTATTTA
41463 TTTTTAATTTCATCATCATTCTAAAAATATTTATTTA
1 TTTTTAATTTCATCATCATTCTAAAAATATTTATTTA
41500 TTTTTAATTTCATCATCATT
1 TTTTTAATTTCATCATCATT
41520 TCACGTCGTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (37 bp):
TTTTTAATTTCATCATCATTCTAAAAATATTTATTTA
Found at i:43721 original size:64 final size:64
Alignment explanation
Indices: 43653--43774 Score: 156
Period size: 64 Copynumber: 1.9 Consensus size: 64
43643 GCACATGCAG
* **
43653 TGCATCGATGCATTAATTTTAAA-AGAAAACATCAAATAGGATTTATGCATCGATGCATAAGGAA
1 TGCATCGATGCATCAACATTAAATA-AAAACATCAAATAGGATTTATGCATCGATGCATAAGGAA
* ** * *
43717 TGCATCGATGTATCCCCATTAAATACAAACATCGAATAGGATTTATGCATCGATGCAT
1 TGCATCGATGCATCAACATTAAATAAAAACATCAAATAGGATTTATGCATCGATGCAT
43775 GGTGTAGTGC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 48 0.98
65 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (64 bp):
TGCATCGATGCATCAACATTAAATAAAAACATCAAATAGGATTTATGCATCGATGCATAAGGAA
Found at i:45057 original size:31 final size:31
Alignment explanation
Indices: 44973--45070 Score: 108
Period size: 31 Copynumber: 3.2 Consensus size: 31
44963 TTTATCTATG
* * *
44973 TCTTTCGAGACATATGGACAGTATACCTATGT
1 TCTTTGGA-ACATATGGACAGTTTACCTAGGT
**
45005 TCTAAGGAACATATGGACAGTTTACCTAGGT
1 TCTTTGGAACATATGGACAGTTTACCTAGGT
* * *
45036 TCTTTGGGACCTATGGACAGTTT-CCGAGGT
1 TCTTTGGAACATATGGACAGTTTACCTAGGT
45066 TCTTT
1 TCTTT
45071 ATGACCTCTT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
30 11 0.20
31 40 0.71
32 5 0.09
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (31 bp):
TCTTTGGAACATATGGACAGTTTACCTAGGT
Found at i:49726 original size:31 final size:31
Alignment explanation
Indices: 49638--49745 Score: 94
Period size: 31 Copynumber: 3.5 Consensus size: 31
49628 AGTCGAGGGT
* * *
49638 TTTACCTATG-TCTTTCGAGACATATGGATAG
1 TTTACCTAGGTTCTTT-GGGACATATGGACAG
* * ** *
49669 TATACCTATGTTCTAAGGAACATATGGACAG
1 TTTACCTAGGTTCTTTGGGACATATGGACAG
*
49700 TTTACCTAGGTTCTTTGGGACCTATGGACAG
1 TTTACCTAGGTTCTTTGGGACATATGGACAG
* *
49731 -TTGCCGAGGTTCTTT
1 TTTACCTAGGTTCTTT
49746 ATGACCTCTG
Statistics
Matches: 62, Mismatches: 14, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
30 13 0.21
31 46 0.74
32 3 0.05
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (31 bp):
TTTACCTAGGTTCTTTGGGACATATGGACAG
Found at i:49752 original size:30 final size:31
Alignment explanation
Indices: 49691--49757 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 31
49681 CTAAGGAACA
* *
49691 TATGGACAGTTTACCTAGGTTCTTTGGGACC
1 TATGGACAGTTTACCGAGGTTCTTTAGGACC
* *
49722 TATGGACAG-TTGCCGAGGTTCTTTATGACC
1 TATGGACAGTTTACCGAGGTTCTTTAGGACC
*
49752 TCTGGA
1 TATGGA
49758 TAGGTCCTTC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
30 22 0.71
31 9 0.29
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.34
Consensus pattern (31 bp):
TATGGACAGTTTACCGAGGTTCTTTAGGACC
Found at i:57126 original size:80 final size:80
Alignment explanation
Indices: 56993--57153 Score: 322
Period size: 80 Copynumber: 2.0 Consensus size: 80
56983 ATTGAGTTGA
56993 GCTCGAGTTTGCCACTATTCAAACTCAACTTGACTCAATTACACCCCTAATTCCAATAAGTCCTT
1 GCTCGAGTTTGCCACTATTCAAACTCAACTTGACTCAATTACACCCCTAATTCCAATAAGTCCTT
57058 AATTATTTATAGACT
66 AATTATTTATAGACT
57073 GCTCGAGTTTGCCACTATTCAAACTCAACTTGACTCAATTACACCCCTAATTCCAATAAGTCCTT
1 GCTCGAGTTTGCCACTATTCAAACTCAACTTGACTCAATTACACCCCTAATTCCAATAAGTCCTT
57138 AATTATTTATAGACT
66 AATTATTTATAGACT
57153 G
1 G
57154 TTGAGATAAC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (80 bp):
GCTCGAGTTTGCCACTATTCAAACTCAACTTGACTCAATTACACCCCTAATTCCAATAAGTCCTT
AATTATTTATAGACT
Found at i:66408 original size:18 final size:19
Alignment explanation
Indices: 66387--66427 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
66377 AACGATGGCA
66387 ATGTGGTAG-AAAATGGAT
1 ATGTGGTAGCAAAATGGAT
* *
66405 ATGTCGTGGCAAAATGGAT
1 ATGTGGTAGCAAAATGGAT
66424 -TGTG
1 ATGTG
66428 TTTAGTGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 2
0.79 0.12 0.08
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.32, C:0.05, G:0.34, T:0.29
Consensus pattern (19 bp):
ATGTGGTAGCAAAATGGAT
Found at i:68282 original size:5 final size:5
Alignment explanation
Indices: 68272--68298 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
68262 TCCCACCTTG
68272 TTTTC TTTTC TTTTC TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT
68299 AATTTGCCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:77800 original size:128 final size:129
Alignment explanation
Indices: 77564--77819 Score: 408
Period size: 128 Copynumber: 2.0 Consensus size: 129
77554 CACATGCTCC
* * *
77564 TAAACTATCATAGAATACATGTGAACTTTTAATTTCTCTTTTTGATAATAAAGTTTTCTATTTTT
1 TAAACCATCATAGAATACATGTGAACTTTAAATTTCTCTTTTTGATAATAAAGTTTTCTATTTCT
* *
77629 CAATTTAATCCCTCAAATTTTCATATATTTCTTTTTTTCTCAATTTATCCTTTATTTTAAGTCT
66 CAATTTAATCCCTCAAATTTTCATATATTCCTTTTTCTCTCAATTTATCCTTTATTTTAAGTCT
* *
77693 TAAACCATCATAGCATACATGTGTACTTTAAATTTCTCTTTTTGATAATAAA-TTTTCTATTTCT
1 TAAACCATCATAGAATACATGTGAACTTTAAATTTCTCTTTTTGATAATAAAGTTTTCTATTTCT
* *
77757 CAATTTAATCTCTCAATTTTTCATATATTCCTTATTTCT-TCAATTTATCCTTTATTTTAAGTC
66 CAATTTAATCCCTCAAATTTTCATATATTCCTT-TTTCTCTCAATTTATCCTTTATTTTAAGTC
77820 CCTTTTTTTT
Statistics
Matches: 117, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
128 65 0.56
129 52 0.44
ACGTcount: A:0.29, C:0.16, G:0.04, T:0.51
Consensus pattern (129 bp):
TAAACCATCATAGAATACATGTGAACTTTAAATTTCTCTTTTTGATAATAAAGTTTTCTATTTCT
CAATTTAATCCCTCAAATTTTCATATATTCCTTTTTCTCTCAATTTATCCTTTATTTTAAGTCT
Found at i:77859 original size:160 final size:157
Alignment explanation
Indices: 77690--78008 Score: 406
Period size: 159 Copynumber: 2.0 Consensus size: 157
77680 TTATTTTAAG
* * * * *
77690 TCTTAAACCATCATAGCATACATGTGTACTTTAAATTTCTCTTTTTGATAATAAATTTTCTATTT
1 TCTTAAACCATCATAGAATAAATATGTACTTTAAATTCCACTTTTTGATAAT-AATTTTCTATTT
* * *
77755 CTCAATTTAATCTCTCAA-TTTTTCATATATTCCTTATTTCTTCAATTTATCCTTTATTTTAAGT
65 CTCAAGTTAATC-CTCAACCTTTTCATATATTCCTTATTTCTTCAATTCATCCTTTATTTTAAGT
* *
77819 CCCTTTTTTTTACCAAAATTGAACCGCATGC
129 --ATGTTTTTTACCAAAATTGAACCGCATGC
* * * *
77850 TCTTAAACCATCGTATAATAAATATGTACTTTCAATTCCACTTTTTGATAATAATTTTCTATTTT
1 TCTTAAACCATCATAGAATAAATATGTACTTTAAATTCCACTTTTTGATAATAATTTTCTATTTC
* * * * *
77915 TTAAGTTAGTCCTCAACCTTTTCATATCTTCTTTTTTTCTTCAATTCATCCTTTATTTTAAGTAT
66 TCAAGTTAATCCTCAACCTTTTCATATATTCCTTATTTCTTCAATTCATCCTTTATTTTAAGTAT
* *
77980 GTTTTTTACCAAATTTGAATCGCATGC
131 GTTTTTTACCAAAATTGAACCGCATGC
78007 TC
1 TC
78009 ATATACAATA
Statistics
Matches: 137, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
157 27 0.20
158 5 0.04
159 61 0.45
160 44 0.32
ACGTcount: A:0.27, C:0.19, G:0.06, T:0.49
Consensus pattern (157 bp):
TCTTAAACCATCATAGAATAAATATGTACTTTAAATTCCACTTTTTGATAATAATTTTCTATTTC
TCAAGTTAATCCTCAACCTTTTCATATATTCCTTATTTCTTCAATTCATCCTTTATTTTAAGTAT
GTTTTTTACCAAAATTGAACCGCATGC
Found at i:78297 original size:2 final size:2
Alignment explanation
Indices: 78290--78323 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
78280 GAAAAGAATA
78290 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
78324 CTTATATGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81286 original size:2 final size:2
Alignment explanation
Indices: 81279--81320 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
81269 ATAATAGTAA
81279 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
81321 CACCAGAAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:81447 original size:37 final size:37
Alignment explanation
Indices: 81371--81443 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
81361 CGGTATACAT
*
81371 ATGACAATAAAAACATGTGTCCCCAAAATATACACAG
1 ATGACAATAAAAACATGTGTCACCAAAATATACACAG
81408 ATGACAATAAAACACAT-T-TCACCAAAATATA-ACAG
1 ATGACAATAAAA-ACATGTGTCACCAAAATATACACAG
81443 A
1 A
81444 GATGGCGTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
35 5 0.15
36 12 0.35
37 13 0.38
38 4 0.12
ACGTcount: A:0.52, C:0.21, G:0.08, T:0.19
Consensus pattern (37 bp):
ATGACAATAAAAACATGTGTCACCAAAATATACACAG
Found at i:93940 original size:21 final size:21
Alignment explanation
Indices: 93914--93965 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
93904 CAATTATAGG
93914 TGCACCGAAAGGTGCAATTAA
1 TGCACCGAAAGGTGCAATTAA
93935 TGCACCGAAAGGTGCAATTAA
1 TGCACCGAAAGGTGCAATTAA
93956 TGCACCGAAA
1 TGCACCGAAA
93966 TTTGAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (21 bp):
TGCACCGAAAGGTGCAATTAA
Found at i:99514 original size:3 final size:3
Alignment explanation
Indices: 99506--99544 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
99496 AAGAAAAATG
* *
99506 AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
99545 TTCAAGTGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:103858 original size:23 final size:24
Alignment explanation
Indices: 103821--103867 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
103811 ACTAGGGATA
*
103821 TATGAATTGGTCCCGAAGGACCAC
1 TATGAAATGGTCCCGAAGGACCAC
103845 TATGAAAT-GTCCCGAAGGACCAC
1 TATGAAATGGTCCCGAAGGACCAC
103868 ATAGAACCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.32, C:0.26, G:0.23, T:0.19
Consensus pattern (24 bp):
TATGAAATGGTCCCGAAGGACCAC
Found at i:104555 original size:20 final size:20
Alignment explanation
Indices: 104530--104581 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
104520 CCTTTTGAAA
104530 TGTATCGATACACACTATAG
1 TGTATCGATACACACTATAG
104550 TGTATCGATACACACTATAG
1 TGTATCGATACACACTATAG
104570 TGTATCGATACA
1 TGTATCGATACA
104582 TTCCTTGACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (20 bp):
TGTATCGATACACACTATAG
Found at i:108076 original size:23 final size:23
Alignment explanation
Indices: 108043--108103 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
108033 AATTTTGTCT
*
108043 CGAATGACCACTATGAAATATCC
1 CGAAGGACCACTATGAAATATCC
* *
108066 CGAAGGGCCACTATGAAATGTCC
1 CGAAGGACCACTATGAAATATCC
*
108089 CGAATGACCACTATG
1 CGAAGGACCACTATG
108104 TCCCGAAGGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.20
Consensus pattern (23 bp):
CGAAGGACCACTATGAAATATCC
Found at i:109324 original size:30 final size:30
Alignment explanation
Indices: 109265--109353 Score: 135
Period size: 30 Copynumber: 3.0 Consensus size: 30
109255 CTCGAAGGAC
* * *
109265 CTATCCAGAGGTCACACAGA-CCCCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
109294 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
*
109324 CTGTCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGTAA
109354 ACTGTCCATA
Statistics
Matches: 55, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
29 18 0.33
30 37 0.67
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGTAA
Found at i:109389 original size:31 final size:31
Alignment explanation
Indices: 109349--109449 Score: 123
Period size: 31 Copynumber: 3.2 Consensus size: 31
109339 AAAGATCCTC
*
109349 GGTAAACTGTCCATATGTTCCTTAGAACATA
1 GGTAAACTGTCCATATGTTCCATAGAACATA
* * *
109380 GGTATACTGTCCATATGTCTCGAAAG-ACATA
1 GGTAAACTGTCCATATGT-TCCATAGAACATA
* *
109411 GGTAAAACTGTCCATATGTTCCGTAGAATATA
1 GGT-AAACTGTCCATATGTTCCATAGAACATA
109443 GGTAAAC
1 GGTAAAC
109450 CCTCGACTCT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
31 33 0.57
32 25 0.43
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (31 bp):
GGTAAACTGTCCATATGTTCCATAGAACATA
Found at i:111710 original size:20 final size:20
Alignment explanation
Indices: 111685--111778 Score: 154
Period size: 20 Copynumber: 4.7 Consensus size: 20
111675 TCCCTTTTGA
111685 AGTGTATCGGTACACACTAT
1 AGTGTATCGGTACACACTAT
111705 AGTGTATCGGTA-ACCACTAT
1 AGTGTATCGGTACA-CACTAT
*
111725 AGTGTATCGGTACACGCTAT
1 AGTGTATCGGTACACACTAT
*
111745 AGTGTATCCGTACACACTAT
1 AGTGTATCGGTACACACTAT
111765 AGTGTATCGGTACA
1 AGTGTATCGGTACA
111779 TTCCTTAACG
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
19 1 0.01
20 66 0.97
21 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (20 bp):
AGTGTATCGGTACACACTAT
Found at i:111799 original size:24 final size:24
Alignment explanation
Indices: 111766--111826 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 24
111756 ACACACTATA
111766 GTGTATCGGTACATTCCTTAACGCT
1 GTGTATCGGTACATTCCTTAACG-T
*
111791 -TGTATCGGTACATTCCTTAGCGT
1 GTGTATCGGTACATTCCTTAACGT
*
111814 GTGTATCGATACA
1 GTGTATCGGTACA
111827 CTACCTATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 1 0.03
24 32 0.97
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (24 bp):
GTGTATCGGTACATTCCTTAACGT
Found at i:120970 original size:22 final size:21
Alignment explanation
Indices: 120933--120973 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
120923 TTCAAAAATA
120933 AAAAAAAATTATTTAATTAAG
1 AAAAAAAATTATTTAATTAAG
*
120954 AAAATAAATTATATTAATTA
1 AAAAAAAATTAT-TTAATTA
120974 TCTATTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAAAAAATTATTTAATTAAG
Found at i:152455 original size:20 final size:21
Alignment explanation
Indices: 152418--152456 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
152408 AAATATTAAT
152418 TTTTAAATAGATTTTCATTGA
1 TTTTAAATAGATTTTCATTGA
*
152439 TTTTAAGTAGA-TTTCATT
1 TTTTAAATAGATTTTCATT
152457 AAAAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (21 bp):
TTTTAAATAGATTTTCATTGA
Found at i:153071 original size:20 final size:20
Alignment explanation
Indices: 153046--153280 Score: 120
Period size: 20 Copynumber: 11.7 Consensus size: 20
153036 GATTTTCCAG
*
153046 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATACGAA
* *
153066 AATCGCAACGCGAACA-TATA
1 AATCGCAACGCGAATACGA-A
* *
153086 AATCGCAACGCG-ATTCTGAC
1 AATCGCAACGCGAATAC-GAA
* * * *
153106 TATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGAATACG-AA
* * *
153127 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
*
153147 AATCACAACGAC-AATACGTAA
1 AATCGCAACG-CGAATACG-AA
* * *
153168 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
* * *
153188 AATCGCAACGAG-ATTCTATA
1 AATCGCAACGCGAATACGA-A
* *
153208 AATCGCAATGAGAATAC-ATA
1 AATCGCAACGCGAATACGA-A
* * * *
153228 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
* * *
153248 AATCGCAATGTGAATACGTA
1 AATCGCAACGCGAATACGAA
153268 AATCGCAACGCGA
1 AATCGCAACGCGA
153281 TTTTTAAAGC
Statistics
Matches: 168, Mismatches: 36, Indels: 22
0.74 0.16 0.10
Matches are distributed among these distances:
19 5 0.03
20 124 0.74
21 39 0.23
ACGTcount: A:0.39, C:0.24, G:0.18, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGAATACGAA
Found at i:153156 original size:41 final size:41
Alignment explanation
Indices: 153107--153277 Score: 168
Period size: 40 Copynumber: 4.2 Consensus size: 41
153097 GATTCTGACT
153107 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
* ** *
153148 ATCACAACGACAATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
* * * * * *
153189 ATCGCAACGAG-ATTC-TATAAATCGCAATGAGAATACATAA
1 ATCGCAACGAGTATCCGTA-AAATCGCAACGCGTATCCGTAA
* * * * * *
153229 ATCGCAATGCGTATCCGT-AAATCGCAATGTGAATACGTAA
1 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
153269 ATCGCAACG
1 ATCGCAACG
153278 CGATTTTTAA
Statistics
Matches: 109, Mismatches: 18, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 57 0.52
41 49 0.45
42 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (41 bp):
ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
Found at i:153535 original size:27 final size:27
Alignment explanation
Indices: 153479--153536 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
153469 CATCTCCGGC
***
153479 GAAATCCCTCACAACCATTCACTGTCA
1 GAAATCCCTCACAACCATTCAAAATCA
*
153506 GAAATCCCTCACAATCATTCAGAAAT-A
1 GAAATCCCTCACAACCATTCA-AAATCA
153533 GAAA
1 GAAA
153537 ATCAACCTCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 25 0.96
28 1 0.04
ACGTcount: A:0.41, C:0.29, G:0.09, T:0.21
Consensus pattern (27 bp):
GAAATCCCTCACAACCATTCAAAATCA
Found at i:153883 original size:21 final size:21
Alignment explanation
Indices: 153822--153898 Score: 90
Period size: 20 Copynumber: 3.8 Consensus size: 21
153812 TTCTAAACTT
153822 AAAATCGCAAC-ATGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
153842 AAAATCGCAAC-ACGA-AAATG
1 AAAATCGCAACGA-GAGAAATG
**
153862 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGAGAAATG
153883 AAAATCGCAACGAGAG
1 AAAATCGCAACGAGAG
153899 TTCGCGTTGC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
20 30 0.60
21 20 0.40
ACGTcount: A:0.51, C:0.18, G:0.19, T:0.12
Consensus pattern (21 bp):
AAAATCGCAACGAGAGAAATG
Found at i:153970 original size:20 final size:20
Alignment explanation
Indices: 153901--153993 Score: 85
Period size: 20 Copynumber: 5.0 Consensus size: 20
153891 AACGAGAGTT
153901 CGCGTTGCGATTTTCATTT-
1 CGCGTTGCGATTTTCATTTC
153920 CGCGTTGCGA--TTC---T-
1 CGCGTTGCGATTTTCATTTC
* **
153934 CACGTTGCGATAGTCATTTC
1 CGCGTTGCGATTTTCATTTC
153954 CGCGTTGCGATTTTCA-TTC
1 CGCGTTGCGATTTTCATTTC
*
153973 TCTCGTTGCGATTTTCATTTC
1 -CGCGTTGCGATTTTCATTTC
153994 AACCAAAAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
14 10 0.17
16 2 0.03
17 3 0.05
19 14 0.23
20 28 0.47
21 3 0.05
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.43
Consensus pattern (20 bp):
CGCGTTGCGATTTTCATTTC
Found at i:154785 original size:20 final size:20
Alignment explanation
Indices: 154762--154954 Score: 221
Period size: 20 Copynumber: 9.6 Consensus size: 20
154752 CAGAATCTCG
*
154762 TTGCGATTTATAG-ATTCGCA
1 TTGCGATTTA-CGTATTCGCA
154782 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGTATTCGCA
154802 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGTATTCGCA
* *
154822 TTGCGATTTACGGATACGCA
1 TTGCGATTTACGTATTCGCA
154842 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGTATTCGCA
* *
154862 TTGCGATTTACGGATACGCA
1 TTGCGATTTACGTATTCGCA
* *
154882 TTGCGATTTACGTATTCTCG
1 TTGCGATTTACGTATTCGCA
* * *
154902 TTACGATTTACAG-ATACGCG
1 TTGCGATTTAC-GTATTCGCA
* *
154922 TTGTGATTTTACGTATT-GTCG
1 TTGCGA-TTTACGTATTCG-CA
154943 TTGCGATTTACG
1 TTGCGATTTACG
154955 GATATGCGTT
Statistics
Matches: 150, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
19 1 0.01
20 134 0.89
21 15 0.10
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (20 bp):
TTGCGATTTACGTATTCGCA
Found at i:154806 original size:40 final size:40
Alignment explanation
Indices: 154762--154971 Score: 271
Period size: 40 Copynumber: 5.2 Consensus size: 40
154752 CAGAATCTCG
* * *
154762 TTGCGATTTATAG-ATTCGCATTGCGATTTACGTATTCGCA
1 TTGCGATTTA-CGTATTCGCATTGCGATTTACGGATACGCA
154802 TTGCGATTTACGTATTCGCATTGCGATTTACGGATACGCA
1 TTGCGATTTACGTATTCGCATTGCGATTTACGGATACGCA
154842 TTGCGATTTACGTATTCGCATTGCGATTTACGGATACGCA
1 TTGCGATTTACGTATTCGCATTGCGATTTACGGATACGCA
* * * * *
154882 TTGCGATTTACGTATTCTCGTTACGATTTACAGATACGCG
1 TTGCGATTTACGTATTCGCATTGCGATTTACGGATACGCA
* * * *
154922 TTGTGATTTTACGTATT-GTCGTTGCGATTTACGGATATGCG
1 TTGCGA-TTTACGTATTCG-CATTGCGATTTACGGATACGCA
154963 TTGCGATTT
1 TTGCGATTT
154972 TACGGATACT
Statistics
Matches: 153, Mismatches: 14, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 118 0.77
41 34 0.22
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (40 bp):
TTGCGATTTACGTATTCGCATTGCGATTTACGGATACGCA
Found at i:154806 original size:60 final size:59
Alignment explanation
Indices: 154741--154892 Score: 173
Period size: 60 Copynumber: 2.5 Consensus size: 59
154731 GAAATTCAGT
* *
154741 ATTGCGATAGTCA-GAATCTCG-TTGCGATTTATAGATTCGCATTGCGATTTACGTATTCGC
1 ATTGCGAT--TCACGAAT-TCGATTGCGATTTACAGATACGCATTGCGATTTACGTATTCGC
* * *
154801 ATTGCGATTTACGTATTCGCATTGCGATTTACGGATACGCATTGCGATTTACGTATTCGC
1 ATTGCGATTCACGAATTCG-ATTGCGATTTACAGATACGCATTGCGATTTACGTATTCGC
* * *
154861 ATTGCGATTTACGGATACGCATTGCGATTTAC
1 ATTGCGATTCACGAATTCG-ATTGCGATTTAC
154893 GTATTCTCGT
Statistics
Matches: 82, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
58 5 0.06
59 3 0.04
60 74 0.90
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (59 bp):
ATTGCGATTCACGAATTCGATTGCGATTTACAGATACGCATTGCGATTTACGTATTCGC
Found at i:154930 original size:60 final size:60
Alignment explanation
Indices: 154762--154990 Score: 192
Period size: 60 Copynumber: 3.8 Consensus size: 60
154752 CAGAATCTCG
** * * * * *
154762 TTGCGATTTATAGATTCGCATTGCGATTTACGTATTCGCATTGCGATTTACGTATTCGCA
1 TTGCGATTTACGGATACGCATTACGATTTACGTATACGCATTGCGATTTACGGATACGCA
* *
154822 TTGCGATTTACGGATACGCATTGCGATTTACGTATTCGCATTGCGATTTACGGATACGCA
1 TTGCGATTTACGGATACGCATTACGATTTACGTATACGCATTGCGATTTACGGATACGCA
* * * * * * * * *
154882 TTGCGATTTACGTATTCTCGTTACGATTTACAG-ATACGCGTTGTGATTTTACGTAT-TGTCG
1 TTGCGATTTACGGATACGCATTACGATTTAC-GTATACGCATTGCGA-TTTACGGATACG-CA
* * * * * *
154943 TTGCGATTTACGGATATGCGTTGCGATTTTACGGATACTCGTTGCGAT
1 TTGCGATTTACGGATACGCATTACGA-TTTACGTATACGCATTGCGAT
154991 AGTCAGAATC
Statistics
Matches: 141, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
60 92 0.65
61 33 0.23
62 16 0.11
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.38
Consensus pattern (60 bp):
TTGCGATTTACGGATACGCATTACGATTTACGTATACGCATTGCGATTTACGGATACGCA
Found at i:154964 original size:20 final size:19
Alignment explanation
Indices: 154762--154978 Score: 164
Period size: 20 Copynumber: 10.8 Consensus size: 19
154752 CAGAATCTCG
**
154762 TTGCGATTTATAGATTCGCA
1 TTGCGATTTACGGATT-GCA
*
154782 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGGATT-GCA
*
154802 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGGATT-GCA
*
154822 TTGCGATTTACGGATACGCA
1 TTGCGATTTACGGAT-TGCA
*
154842 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGGATT-GCA
*
154862 TTGCGATTTACGGATACGCA
1 TTGCGATTTACGGAT-TGCA
* * *
154882 TTGCGATTTACGTATTCTCG
1 TTGCGATTTACGGATT-GCA
* * * *
154902 TTACGATTTACAGATACGCG
1 TTGCGATTTACGGAT-TGCA
* * *
154922 TTGTGATTTTACGTATTGTCG
1 TTGCGA-TTTACGGATTG-CA
*
154943 TTGCGATTTACGGATATGCG
1 TTGCGATTTACGGAT-TGCA
154963 TTGCGATTTTACGGAT
1 TTGCGA-TTTACGGAT
154979 ACTCGTTGCG
Statistics
Matches: 163, Mismatches: 25, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
20 138 0.85
21 25 0.15
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.39
Consensus pattern (19 bp):
TTGCGATTTACGGATTGCA
Found at i:155245 original size:2 final size:2
Alignment explanation
Indices: 155238--155262 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
155228 TTATTTTCTC
155238 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
155263 CTAGAGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:155587 original size:62 final size:61
Alignment explanation
Indices: 155481--155600 Score: 150
Period size: 62 Copynumber: 2.0 Consensus size: 61
155471 GGTAAAAGTA
* * * *
155481 CGGATCGCCATCCGTGCCTTCGAGAGGTTTTTTCCAAGCTGACGCCACATAAGTAAAGCTG
1 CGGATCGCCATCCGGGCCTTCGAGAGGTTCTGTCCAAGCTGACGCCACATAAGGAAAGCTG
* * ** *
155542 CGGATCGTCATCCGCGGCCTTCGAGGGGTTCTGTCTGAGCTGACGCCACGTAAGGAAAG
1 CGGATCGCCATCCG-GGCCTTCGAGAGGTTCTGTCCAAGCTGACGCCACATAAGGAAAG
155601 ACGTGGATGG
Statistics
Matches: 49, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
61 13 0.27
62 36 0.73
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (61 bp):
CGGATCGCCATCCGGGCCTTCGAGAGGTTCTGTCCAAGCTGACGCCACATAAGGAAAGCTG
Found at i:155961 original size:60 final size:60
Alignment explanation
Indices: 155893--156005 Score: 174
Period size: 60 Copynumber: 1.9 Consensus size: 60
155883 GACACGGATT
* * * *
155893 CTTCAAGTTCCAGGGGGAGGCATTCAACTACGAGCTT-CTTCGACCTCAATATCAAAATGC
1 CTTCAAGTTCAAGGGGAAGGCATTCAACTACCAGCTTGC-TCGACCTAAATATCAAAATGC
155953 CTTCAAGTTCAAGGGGAAGGCATTCAACTACCAGCTTGCTCGACCTAAATATC
1 CTTCAAGTTCAAGGGGAAGGCATTCAACTACCAGCTTGCTCGACCTAAATATC
156006 GACATCCTGG
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
60 47 0.98
61 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (60 bp):
CTTCAAGTTCAAGGGGAAGGCATTCAACTACCAGCTTGCTCGACCTAAATATCAAAATGC
Found at i:169867 original size:9 final size:8
Alignment explanation
Indices: 169834--169963 Score: 59
Period size: 9 Copynumber: 15.2 Consensus size: 8
169824 TCGCTTGAAG
169834 AAGAAATAA
1 AAGAAA-AA
169843 AAGGAAAAA
1 AA-GAAAAA
*
169852 ACG-AAAA
1 AAGAAAAA
*
169859 ACGAAAAA
1 AAGAAAAA
169867 ATA-ATAAAA
1 A-AGA-AAAA
* *
169876 ATGAGAAA
1 AAGAAAAA
169884 AAGAAAAA
1 AAGAAAAA
169892 GAAGAAAAGA
1 -AAGAAAA-A
*
169902 AGGAAAAAA
1 AAG-AAAAA
169911 TAAGAAAAA
1 -AAGAAAAA
169920 AATGAGAAAA
1 AA-GA-AAAA
*
169930 AATAAAAA
1 AAGAAAAA
* *
169938 TA-ATAAA
1 AAGAAAAA
169945 AAGAGAAAA
1 AAGA-AAAA
*
169954 ATGAAAAA
1 AAGAAAAA
169962 AA
1 AA
169964 AAAGAGAAAT
Statistics
Matches: 93, Mismatches: 15, Indels: 27
0.69 0.11 0.20
Matches are distributed among these distances:
7 12 0.13
8 29 0.31
9 35 0.38
10 17 0.18
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.08
Consensus pattern (8 bp):
AAGAAAAA
Found at i:169915 original size:19 final size:21
Alignment explanation
Indices: 169872--169934 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
169862 AAAAAATAAT
*
169872 AAAAATGAGAAAAAGAAAAAGAA
1 AAAAATGAG-AAAA-AATAAGAA
*
169895 GAAAA-GAAGGAAAAAATAAGAA
1 AAAAATG-A-GAAAAAATAAGAA
169917 AAAAATGAGAAAAAATAA
1 AAAAATGAGAAAAAATAA
169935 AAATAATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
21 10 0.29
22 13 0.38
23 10 0.29
24 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.06
Consensus pattern (21 bp):
AAAAATGAGAAAAAATAAGAA
Found at i:169953 original size:45 final size:45
Alignment explanation
Indices: 169872--169972 Score: 111
Period size: 44 Copynumber: 2.3 Consensus size: 45
169862 AAAAAATAAT
*
169872 AAAAATGAG-AAAAAGAAAAAGAAGAAAAGAAGGAAAAAAT-AAGAA
1 AAAAATGAGAAAAAAGAAAAAGAAAAAAAGAAGG-AAAAATGAA-AA
* *
169917 AAAAATGAGAAAAAATAAAAATAATAAAAAG-A-GAAAAATGAAAA
1 AAAAATGAGAAAAAAGAAAAAGAA-AAAAAGAAGGAAAAATGAAAA
*
169961 AAAAAAGAGAAA
1 AAAAATGAGAAA
169973 TAAAAGGAGG
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
44 19 0.39
45 12 0.24
46 13 0.27
47 5 0.10
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (45 bp):
AAAAATGAGAAAAAAGAAAAAGAAAAAAAGAAGGAAAAATGAAAA
Found at i:171469 original size:102 final size:102
Alignment explanation
Indices: 171287--171809 Score: 679
Period size: 102 Copynumber: 5.0 Consensus size: 102
171277 GAAGCAAATT
* *
171287 AGTTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGAT
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGAT
* *
171352 TGAGTCCTATGCTCTCTGAATGAATAGGGAGCGGACA
66 TGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
*
171389 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAAGAATAGGGAGCGGACAAGTTTGTTGAAGAT
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGAT
171454 TGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
66 TGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
* *
171491 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGAT
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGAT
171556 TGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
66 TGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
* * **
171593 AGTTCGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTT-TATG
1 AGTTCGTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGT-TG
* *
171657 AAGATTGCTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACA
61 AAGA-T--T-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
* * * * ** ** *
171703 TGTTTGTTAAAGATTGAGTCCTATACTCTCTGAAGGAGTAGAAAGCGGACCTGTTTTATTGAAGA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAG-TTTGTTGAAGA
* * * *
171768 TTGTTCAAGTCTTATACTCTCTGAATGAATAGAGAGCAGACA
65 TTG----AGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
171810 CATTTTATGA
Statistics
Matches: 378, Mismatches: 28, Indels: 25
0.88 0.06 0.06
Matches are distributed among these distances:
102 210 0.56
103 1 0.00
104 1 0.00
105 3 0.01
106 76 0.20
107 41 0.11
108 1 0.00
109 1 0.00
110 44 0.12
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (102 bp):
AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTTGTTGAAGAT
TGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
Found at i:171565 original size:153 final size:153
Alignment explanation
Indices: 171287--171809 Score: 697
Period size: 153 Copynumber: 3.3 Consensus size: 153
171277 GAAGCAAATT
*
171287 AGTTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGAT
1 AGTTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGAGAGCGGACAAGTTCGTTGAAGAT
*
171352 TGAGTCCTATGCTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTC
66 TGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTC
*
171417 TCTGAAAGAATAGGGAGCGGACA
131 TCTGAAGGAATAGGGAGCGGACA
*
171440 AGTTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGAT
1 AGTTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGAGAGCGGACAAGTTCGTTGAAGAT
171505 TGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTC
66 TGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTC
171570 TCTGAAGGAATAGGGAGCGGACA
131 TCTGAAGGAATAGGGAGCGGACA
* * ** *
171593 AGTTCGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTT-TTATG
1 AGTTTGTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAATAGAGAGCGGACAAGTTCGT-TG
* * * * * *
171657 AAGATTGCTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACATGTTTGTTAAAGATTGAGT
61 AAGA-T--T-GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGT
* ** *
171722 CCTATACTCTCTGAAGGAGTAGAAAGCGGACC
122 CCTATACTCTCTGAAGGAATAGGGAGCGGACA
* * * * *
171754 TGTTTTATTGAAGATTGTTCAAGTCTTATACTCTCTGAATGAATAGAGAGCAGACA
1 AG-TTTGTTGAAGATTG----AGTCCTATACTCTCTGAAGGAATAGAGAGCGGACA
171810 CATTTTATGA
Statistics
Matches: 330, Mismatches: 26, Indels: 19
0.88 0.07 0.05
Matches are distributed among these distances:
153 163 0.49
156 3 0.01
157 42 0.13
158 2 0.01
159 2 0.01
160 1 0.00
161 78 0.24
162 39 0.12
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.28
Consensus pattern (153 bp):
AGTTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGAGAGCGGACAAGTTCGTTGAAGAT
TGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTC
TCTGAAGGAATAGGGAGCGGACA
Found at i:171758 original size:51 final size:51
Alignment explanation
Indices: 171287--171739 Score: 674
Period size: 51 Copynumber: 8.7 Consensus size: 51
171277 GAAGCAAATT
*
171287 AGTTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
* *
171338 AGTTCGTTGAAGATTGAGTCCTATGCTCTCTGAATGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
*
171389 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAAGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
*
171440 AGTTTGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
*
171491 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
171542 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
* * *
171593 AGTTCGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
1 AGTTCGTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
* * * *
171648 CGTT-TTATGAAGATTGCTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACA
1 AGTTCGT-TGAAGA-T--T-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
* * *
171703 TGTTTGTTAAAGATTGAGTCCTATACTCTCTGAAGGA
1 AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGA
171740 GTAGAAAGCG
Statistics
Matches: 371, Mismatches: 23, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
51 279 0.75
52 1 0.00
53 1 0.00
54 4 0.01
55 85 0.23
56 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (51 bp):
AGTTCGTTGAAGATTGAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
Found at i:171863 original size:55 final size:55
Alignment explanation
Indices: 171302--171857 Score: 377
Period size: 51 Copynumber: 10.5 Consensus size: 55
171292 GTTGAAGATT
* *
171302 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA-AGTTCGT-TGAAGA---TT-
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACA-TT-TTATGAAGATTGTTC
* * * *
171353 GAGTCCTATGCTCTCTGAATGAATAGGGAGCGGACA-AGTTCGT-TGAAGA---TT-
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACA-TT-TTATGAAGATTGTTC
* *
171404 GAGTCCTATACTCTCTGAAAGAATAGGGAGCGGACA-AGTTTGT-TGAAGA---TT-
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACA-TTT-TATGAAGATTGTTC
* *
171455 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA-AGTTCGT-TGAAGA---TT-
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACA-TT-TTATGAAGATTGTTC
* * *
171506 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACA-AGTTCGT-TGAAGA---TT-
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACA-TT-TTATGAAGATTGTTC
* *
171557 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA-AGTTCGT-TGAAGATTGTTC
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACA-TT-TTATGAAGATTGTTC
* * * *
171612 GAGT-TCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATGAAGATTGCTC
1 GAGTCT-TATACTCTCTGAAGGAATAGGGAGCGGACACATTTTATGAAGATTGTTC
* *
171667 GAGT-TCTATACTCTCTGAAGGAATAGGGAGC-GA-ACATGTTTGTTAA-A--GATT-
1 GAGTCT-TATACTCTCTGAAGGAATAGGGAGCGGACACAT-TTTATGAAGATTG-TTC
* * ** *
171718 GAGTCCTATACTCTCTGAAGGAGTAGAAAGCGGAC-CTGTTTTATTGAAGATTGTTC
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACAC-ATTTTA-TGAAGATTGTTC
* * * *
171774 AAGTCTTATACTCTCTGAATGAATAGAGAGCAGACACATTTTATGAAGATTGTTC
1 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACATTTTATGAAGATTGTTC
171829 GAGTCTTATACT-TCCTGAAGGAATAGGGA
1 GAGTCTTATACTCT-CTGAAGGAATAGGGA
171858 ACAGACTCGT
Statistics
Matches: 445, Mismatches: 38, Indels: 40
0.85 0.07 0.08
Matches are distributed among these distances:
51 269 0.60
52 7 0.02
53 7 0.02
54 13 0.03
55 113 0.25
56 35 0.08
57 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (55 bp):
GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACACATTTTATGAAGATTGTTC
Found at i:175233 original size:21 final size:21
Alignment explanation
Indices: 175203--175246 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
175193 TTTATGGGTT
175203 ATGTGCATCGATGCA-TCTTCA
1 ATGTGCATCGATGCACTC-TCA
*
175224 ATGTGTATCGATGCACTCTCA
1 ATGTGCATCGATGCACTCTCA
175245 AT
1 AT
175247 TAAAGAAGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (21 bp):
ATGTGCATCGATGCACTCTCA
Found at i:185979 original size:31 final size:31
Alignment explanation
Indices: 185916--186035 Score: 176
Period size: 30 Copynumber: 4.0 Consensus size: 31
185906 CCCGAAGGAC
* *
185916 CAGTCCATA-GATTCCGAAGAACCTA-GTAAA
1 CAGTCCATATG-TCCCGAAGAACATAGGTAAA
185946 CAGTCCATATGTCCCGAAGAACATAGGTAAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
185977 CAGTCCATATGTCCCGAAG-ACATAGGT-AA
1 CAGTCCATATGTCCCGAAGAACATAGGTAAA
*
186006 CAGTCCATATGTCCCGAAGACCATAGGTAA
1 CAGTCCATATGTCCCGAAGAACATAGGTAA
186036 CCCTCGACCC
Statistics
Matches: 83, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
29 21 0.25
30 36 0.43
31 26 0.31
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (31 bp):
CAGTCCATATGTCCCGAAGAACATAGGTAAA
Found at i:186017 original size:29 final size:29
Alignment explanation
Indices: 185944--186036 Score: 159
Period size: 29 Copynumber: 3.1 Consensus size: 29
185934 GAACCTAGTA
185944 AACAGTCCATATGTCCCGAAGAACATAGGT
1 AACAGTCCATATGTCCCGAAG-ACATAGGT
185974 AAACAGTCCATATGTCCCGAAGACATAGGT
1 -AACAGTCCATATGTCCCGAAGACATAGGT
186004 AACAGTCCATATGTCCCGAAGACCATAGGT
1 AACAGTCCATATGTCCCGAAGA-CATAGGT
186034 AAC
1 AAC
186037 CCTCGACCCT
Statistics
Matches: 61, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
29 22 0.36
30 18 0.30
31 21 0.34
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.19
Consensus pattern (29 bp):
AACAGTCCATATGTCCCGAAGACATAGGT
Found at i:186733 original size:21 final size:21
Alignment explanation
Indices: 186703--186747 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
186693 ATTCTGTCGT
* *
186703 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
186724 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
186745 TTG
1 TTG
186748 CCAGAAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Done.