genome.fa.s9319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009319.1 Hibiscus syriacus cultivar Beakdansim tig00113076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93026

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2744--2800	25	2.1	28	81	12	66	38	1	12	47	1.51
5086--5144	29	2.1	29	81	6	68	37	1	11	49	1.50
12240--12295	20	2.9	20	80	15	64	16	28	25	30	1.96
12291--12345	17	3.3	16	92	2	83	20	47	21	10	1.80
14414--14472	29	2.1	29	81	6	68	37	1	11	49	1.50
28515--28567	9	5.4	10	78	13	65	15	20	28	35	1.93
28600--28696	29	3.4	28	84	5	104	26	7	23	42	1.80
35743--35781	19	2.0	20	95	5	71	17	15	25	41	1.89
35746--35788	20	2.2	19	87	4	59	13	18	30	37	1.90
35780--35834	23	2.4	23	84	0	83	16	40	25	18	1.91
35791--35831	13	3.4	13	80	19	61	17	46	21	14	1.84
35861--35928	29	2.3	29	84	0	82	29	4	23	42	1.73
40164--40222	29	2.1	29	81	6	68	37	1	11	49	1.50
42482--42540	29	2.1	29	84	6	77	37	3	11	47	1.57
44939--44995	13	4.4	13	80	8	62	15	45	19	19	1.85
44938--44987	26	1.9	26	91	0	82	16	48	18	18	1.82
44938--44995	26	2.2	26	87	0	80	15	46	18	18	1.84
47414--47529	48	2.4	47	82	2	142	25	15	18	40	1.90
47414--47529	24	4.8	24	82	6	128	25	15	18	40	1.90
47487--47536	24	2.1	24	88	0	73	24	14	14	48	1.80
49611--49659	23	2.4	20	83	16	57	18	48	18	14	1.80
51792--51937	29	5.1	29	78	3	143	47	16	2	33	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51938--52016	18	4.1	18	74	15	77	16	21	40	21	1.91
51942--51994	23	2.3	23	87	6	72	13	22	43	20	1.86
58064--58185	42	2.9	42	88	0	190	34	23	22	19	1.97
59009--59197	29	6.6	29	80	1	164	46	17	2	32	1.62
66660--66720	30	2.0	30	90	6	97	42	11	4	40	1.62
69160--69222	21	2.9	21	85	4	81	17	25	36	20	1.94
73033--73072	21	1.9	21	85	10	55	35	10	2	52	1.48
75289--75349	30	2.0	30	90	6	97	42	11	4	40	1.62
76569--76625	27	2.1	27	80	6	62	35	1	12	50	1.50

Tables:   1

The End!