genome.fa.s932.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000932.1 Hibiscus syriacus cultivar Beakdansim tig00001859_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68733

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2602--2636	18	1.9	18	94	0	61	22	34	22	20	1.97
4703--4858	63	2.5	64	76	5	165	26	19	19	33	1.96
4703--4879	64	2.8	62	77	7	169	25	19	20	34	1.96
6202--6252	20	2.5	20	100	0	102	11	29	25	33	1.91
7247--7283	17	2.2	17	90	4	58	56	8	0	35	1.29
10808--10859	21	2.4	22	87	9	72	51	0	0	48	1.00
10978--11025	21	2.2	21	85	7	60	45	2	2	50	1.25
10978--11040	23	2.8	21	83	9	63	47	1	1	49	1.20
10994--11056	23	2.8	22	77	13	58	47	0	3	49	1.17
11190--11266	13	6.1	13	67	17	54	45	0	3	50	1.20
11192--11272	21	4.0	21	73	20	73	43	0	3	53	1.18
11189--11304	12	9.8	12	72	14	64	48	0	2	49	1.15
11263--11319	23	2.4	23	88	5	78	50	0	0	49	1.00
11919--11957	16	2.5	16	87	4	53	17	28	30	23	1.97
12007--12049	15	2.8	16	82	7	52	23	32	30	13	1.93
13170--13206	15	2.4	16	83	16	51	56	0	0	43	0.99
13229--13284	28	2.0	28	85	0	76	48	1	8	41	1.45
21105--21179	22	3.5	22	75	3	89	52	2	0	45	1.15
21100--21193	43	2.2	43	94	3	165	51	4	0	44	1.21
27188--27243	23	2.4	23	79	8	60	12	14	16	57	1.66
28542--28623	15	5.5	15	88	2	121	37	7	19	35	1.80
28542--28623	30	2.8	30	94	1	139	37	7	19	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28537--28623	45	2.0	44	93	2	147	40	6	19	33	1.78
28606--28675	20	3.5	20	94	0	122	41	10	12	35	1.77
28872--28920	22	2.1	25	85	11	68	61	0	0	38	0.96
28841--28944	29	3.5	28	74	19	86	53	1	0	43	1.18
28885--28932	24	2.0	24	84	8	62	58	2	0	39	1.10
28867--28940	32	2.3	33	79	13	82	52	2	0	44	1.15
28960--29003	22	2.0	23	86	4	63	54	0	0	45	0.99
28964--29020	21	2.6	22	81	10	64	52	0	0	47	1.00
28900--29020	54	2.3	51	77	19	133	50	0	0	47	1.12
29209--29324	42	2.8	42	97	0	214	43	18	19	17	1.88
31045--31120	12	6.1	13	67	18	54	77	1	5	15	1.01
31050--31117	25	2.8	25	80	6	77	76	1	5	16	1.05
31019--31092	31	2.4	31	84	6	96	72	2	5	18	1.15
36355--36389	17	2.1	17	100	0	70	22	5	60	11	1.52
36793--36840	3	16.3	3	86	4	71	64	0	0	35	0.94
37216--37323	33	3.5	31	87	6	164	36	10	18	35	1.85
37052--37617	67	8.6	67	68	17	260	37	10	18	32	1.86
37377--37481	36	2.9	37	86	1	149	40	12	20	27	1.88
37500--37589	35	2.6	35	94	3	155	31	10	16	42	1.81
37575--37654	35	2.2	37	86	8	121	40	13	18	27	1.89
37575--37675	35	2.8	36	82	7	118	39	14	18	26	1.90
39334--39400	9	7.0	9	71	18	55	1	13	5	79	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39329--39396	28	2.4	28	83	9	84	1	13	5	79	0.98
39334--39414	10	7.9	10	72	9	56	1	14	6	77	1.02
39356--39396	17	2.3	19	87	8	59	0	12	4	82	0.81
39329--39408	29	2.8	28	82	5	88	1	15	5	78	0.98
39324--39414	39	2.3	39	81	9	105	1	15	6	76	1.04
40432--40569	64	2.2	64	85	2	179	31	17	23	27	1.97
40577--40614	20	1.9	20	88	0	58	34	18	21	26	1.96
41698--41758	23	2.7	23	84	0	86	16	24	24	34	1.95
42106--42150	2	22.0	2	86	4	63	46	2	4	46	1.35
45092--45149	20	2.6	22	89	10	84	31	20	22	25	1.98
46170--46268	46	2.2	45	82	12	114	19	21	22	37	1.94
46200--46268	23	3.0	23	79	8	86	18	23	23	34	1.96
46620--46684	2	32.5	2	100	0	130	49	0	0	50	1.00
49794--49870	31	2.4	32	85	6	104	72	3	3	19	1.16
49813--49862	18	3.1	16	74	25	52	78	2	6	14	1.03
49813--49890	14	5.6	14	75	17	65	76	1	6	15	1.04
49825--49897	25	2.9	24	84	10	83	75	1	6	16	1.09
50835--50883	3	17.0	3	84	16	68	63	0	2	34	1.06
51063--51126	18	3.5	18	70	15	51	51	3	6	39	1.43
53837--54014	36	5.0	36	91	3	279	16	27	25	30	1.97
60183--60226	19	2.3	19	84	0	52	54	15	15	13	1.71
62711--62827	32	3.7	32	89	3	166	30	16	17	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62724--62910	31	6.0	31	79	6	148	30	18	18	33	1.94
63749--63780	14	2.4	14	90	10	50	18	12	21	46	1.82
67114--67153	21	1.9	21	94	0	71	42	12	0	45	1.42
67112--67258	79	1.9	80	81	4	181	38	11	8	41	1.73
67251--67294	21	2.1	21	91	0	70	52	2	9	36	1.46
68483--68521	14	2.8	14	92	0	60	17	0	30	51	1.46
68482--68526	7	6.4	7	81	0	54	17	0	33	48	1.48

Tables:   1

The End!