Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009321.1 Hibiscus syriacus cultivar Beakdansim tig00113080_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 39803
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Found at i:9753 original size:12 final size:13
Alignment explanation
Indices: 9736--9796 Score: 51
Period size: 13 Copynumber: 5.0 Consensus size: 13
9726 ATAATTTGAT
9736 TTTATTATT-TTA
1 TTTATTATTATTA
9748 TTTATTATTATTA
1 TTTATTATTATTA
* *
9761 TTTGATTGTTAATA
1 TTT-ATTATTATTA
9775 -TT-TTA-T-TTA
1 TTTATTATTATTA
*
9784 TTTATTAATATTA
1 TTTATTATTATTA
9797 GTCTTGCAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
9 2 0.05
10 3 0.08
11 5 0.13
12 10 0.26
13 11 0.28
14 8 0.21
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (13 bp):
TTTATTATTATTA
Found at i:9780 original size:32 final size:32
Alignment explanation
Indices: 9729--9795 Score: 100
Period size: 32 Copynumber: 2.1 Consensus size: 32
9719 TGACACAATA
* *
9729 ATTTGATTTTATTATTTTATTTA-TTATTATT
1 ATTTGATTTTAATATTTTATTTATTTATTAAT
9760 ATTTGATTGTTAATATTTTATTTATTTATTAAT
1 ATTTGATT-TTAATATTTTATTTATTTATTAAT
9793 ATT
1 ATT
9796 AGTCTTGCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 8 0.25
32 14 0.44
33 10 0.31
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.67
Consensus pattern (32 bp):
ATTTGATTTTAATATTTTATTTATTTATTAAT
Found at i:9782 original size:19 final size:20
Alignment explanation
Indices: 9737--9796 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 20
9727 TAATTTGATT
9737 TTATTATTTTATTTA-T--TA
1 TTATTA-TTTATTTATTAATA
*
9755 TTATTATTTGA-TTGTTAATA
1 TTATTATTT-ATTTATTAATA
9775 TT-TTATTTATTTATTAATA
1 TTATTATTTATTTATTAATA
9794 TTA
1 TTA
9797 GTCTTGCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
17 5 0.15
18 9 0.26
19 16 0.47
20 4 0.12
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (20 bp):
TTATTATTTATTTATTAATA
Found at i:13575 original size:17 final size:18
Alignment explanation
Indices: 13553--13587 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
13543 ATCGGCCGTT
*
13553 AAATATTT-TATTTAAAA
1 AAATATTTAAATTTAAAA
13570 AAATATTTAAATTTAAAA
1 AAATATTTAAATTTAAAA
13588 TATACAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATATTTAAATTTAAAA
Found at i:22438 original size:21 final size:20
Alignment explanation
Indices: 22411--22509 Score: 81
Period size: 21 Copynumber: 4.8 Consensus size: 20
22401 AATCAGTTTC
22411 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
22432 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
22453 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
22473 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
22494 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
22510 ACACATAAAT
Statistics
Matches: 61, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
20 16 0.26
21 45 0.74
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.21
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:22785 original size:20 final size:20
Alignment explanation
Indices: 22476--22778 Score: 338
Period size: 20 Copynumber: 15.2 Consensus size: 20
22466 CGATTTTCCA
* ** *
22476 AAATCGCAACGCGAATATGA
1 AAATCGCAACGAGAATCCGT
* *
22496 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGAGAATC-CGT
* *
22516 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
* *
22536 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGAGAATCCGT
* * *
22556 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
* * *
22576 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
* * *
22596 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGAGAATCCGT
*
22616 AAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
*
22636 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGT
*
22656 AAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
*
22676 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGT
* *
22696 AAATCGTAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
*
22716 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGT
*
22736 AAATCGCAACGATAATCCGT
1 AAATCGCAACGAGAATCCGT
*
22756 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGAGAATCCGT
22776 AAA
1 AAA
22779 ACACAACACT
Statistics
Matches: 248, Mismatches: 33, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
20 247 1.00
21 1 0.00
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGAGAATCCGT
Found at i:23506 original size:24 final size:23
Alignment explanation
Indices: 23467--23512 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
23457 AAATTTGGTC
23467 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGA-TTTGATA
23491 TTGGTCAATA-CACGGATTTGAT
1 TTGGTCAATATC-CGGATTTGAT
23513 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (23 bp):
TTGGTCAATATCCGGATTTGATA
Found at i:25990 original size:33 final size:34
Alignment explanation
Indices: 25939--26103 Score: 183
Period size: 33 Copynumber: 4.7 Consensus size: 34
25929 CGGAAATTAC
* *
25939 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACAATGAAAATCGCAATGCGAAATGAA
*
25972 AATCCCAAC-ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAACAATGAAAATCGCAATGC-GAAATGAA
26006 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--C--AATGAAAATCGCAATGCGAAATGAA
* *
26044 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACAATGAAAATCGCAATGCGAAATGAA
26077 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAA--C--AATGAAAATCGCAA
26104 CGAGAGAATC
Statistics
Matches: 113, Mismatches: 7, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
32 1 0.01
33 50 0.44
34 16 0.14
35 1 0.01
36 2 0.02
37 1 0.01
38 26 0.23
39 16 0.14
ACGTcount: A:0.47, C:0.18, G:0.21, T:0.14
Consensus pattern (34 bp):
AATCGCAACAATGAAAATCGCAATGCGAAATGAA
Found at i:26022 original size:19 final size:19
Alignment explanation
Indices: 25953--26141 Score: 219
Period size: 19 Copynumber: 10.7 Consensus size: 19
25943 GCAACGAGAG
25953 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
25972 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
25986 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
26006 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
26025 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
26044 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
26058 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
26077 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
26096 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
*
26110 AATCGCAATGCGAAATTAA
1 AATCGCAATGCGAAATGAA
*
26129 AATCGCATTGCGA
1 AATCGCAATGCGA
26142 TTCTCCGTTG
Statistics
Matches: 146, Mismatches: 8, Indels: 32
0.78 0.04 0.17
Matches are distributed among these distances:
14 32 0.22
15 2 0.01
16 5 0.03
17 5 0.03
18 2 0.01
19 84 0.58
20 16 0.11
ACGTcount: A:0.46, C:0.18, G:0.21, T:0.15
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:26080 original size:52 final size:52
Alignment explanation
Indices: 25939--26141 Score: 281
Period size: 52 Copynumber: 3.9 Consensus size: 52
25929 CGGAAATTAC
*
25939 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAA--C---ATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
25986 AATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--C-G--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
26044 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
* *
26096 AATCGCAACGAGAGAATCGCAATGCGAAATTAAAATCGCATTGCGA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGA
26142 TTCTCCGTTG
Statistics
Matches: 140, Mismatches: 5, Indels: 17
0.86 0.03 0.10
Matches are distributed among these distances:
47 8 0.06
49 1 0.01
50 1 0.01
52 85 0.61
53 29 0.21
55 2 0.01
56 1 0.01
58 13 0.09
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (52 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:26174 original size:52 final size:52
Alignment explanation
Indices: 26112--26226 Score: 160
Period size: 52 Copynumber: 2.2 Consensus size: 52
26102 AACGAGAGAA
*
26112 TCGCAATGCGAAATTAAAATCGCATTGCGATTCTC-CGTTGCGATTTTCATT
1 TCGCATTGCGAAATTAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
** * **
26163 TCCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 T-CGCATTGCGAAATTAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
26216 TCGCATTGCGA
1 TCGCATTGCGA
26227 TTTTCATTTC
Statistics
Matches: 56, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
51 1 0.02
52 38 0.68
53 17 0.30
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.39
Consensus pattern (52 bp):
TCGCATTGCGAAATTAAAATCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:26189 original size:19 final size:19
Alignment explanation
Indices: 26149--26246 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
26139 CGATTCTCCG
26149 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
26169 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
26188 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
26202 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
26221 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
26240 TTGCGAT
1 TTGCGAT
26247 AGTCAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:26227 original size:52 final size:52
Alignment explanation
Indices: 26131--26246 Score: 216
Period size: 52 Copynumber: 2.2 Consensus size: 52
26121 GAAATTAAAA
26131 TCGCATTGCGATTCTCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
26183 TCGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATT
1 TCGCATTGCGATTCTC-CGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
26235 TCGCATTGCGAT
1 TCGCATTGCGAT
26247 AGTCAATTTT
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
52 46 0.73
53 17 0.27
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (52 bp):
TCGCATTGCGATTCTCCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATT
Found at i:26371 original size:14 final size:14
Alignment explanation
Indices: 26352--26388 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
26342 CATCAATTAC
26352 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
26366 ACAAATCATCTTTT
1 ACAAATCAACTTTT
26380 ACAAATCAA
1 ACAAATCAA
26389 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:28386 original size:14 final size:14
Alignment explanation
Indices: 28367--28423 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
28357 GCGAAATGAA
*
28367 AATCGCAACGACAG
1 AATCGCAACGAAAG
28381 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
28398 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
28414 AATCGCAACG
1 AATCGCAACG
28424 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:28394 original size:33 final size:33
Alignment explanation
Indices: 28348--28440 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
28338 GCGAAACCAA
*
28348 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
28381 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
28414 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
28441 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:28405 original size:19 final size:19
Alignment explanation
Indices: 28311--28445 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
28301 TAGTTTACTT
* *
28311 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
28331 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
28350 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
28369 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
28383 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
28402 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
28416 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
28435 TCGCAATGCGA
1 TCGCAACGCGA
28446 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:28463 original size:19 final size:19
Alignment explanation
Indices: 28441--28569 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
28431 AAAATCGCAA
28441 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
28460 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
28474 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
28493 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
28507 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
28526 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
28545 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
28565 TGCGA
1 TGCGA
28570 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:28483 original size:33 final size:33
Alignment explanation
Indices: 28441--28532 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
28431 AAAATCGCAA
28441 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
28474 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
28507 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
28533 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:28930 original size:93 final size:93
Alignment explanation
Indices: 28617--29083 Score: 886
Period size: 93 Copynumber: 5.1 Consensus size: 93
28607 ATGGATTGCA
28617 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTA-TTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
28680 TAGCAGAATTGGCAGCAACCGAAGAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
28708 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAG-T
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
28772 TAGCAGAATTAGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
28800 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
28865 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
28893 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
28958 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
28986 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
29051 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
29079 TTACT
1 TTACT
29084 AAGCAATCTA
Statistics
Matches: 369, Mismatches: 4, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
91 4 0.01
92 123 0.33
93 242 0.66
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Done.