genome.fa.s9322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009322.1 Hibiscus syriacus cultivar Beakdansim tig00113081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77956

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320--354	18	1.9	18	88	11	54	54	5	17	22	1.64
669--700	2	16.0	2	100	0	64	50	0	0	50	1.00
1210--1507	144	2.0	147	94	3	523	27	16	20	35	1.94
3555--3609	19	2.9	19	94	0	92	40	12	12	34	1.82
3715--3756	21	2.0	21	95	0	75	23	21	28	26	1.99
6882--6941	29	2.0	31	90	6	97	35	6	16	41	1.75
7237--7327	40	2.3	38	83	10	112	48	15	13	23	1.80
14911--14938	6	4.7	6	100	0	56	28	17	17	35	1.93
16916--17149	114	2.1	114	94	1	407	31	19	18	30	1.95
18089--18393	113	2.7	114	82	2	380	29	31	14	24	1.94
18089--18433	114	3.0	113	80	2	406	29	32	13	23	1.94
31679--31776	33	3.1	31	81	7	108	33	18	27	20	1.96
32306--32565	57	4.5	57	81	4	313	48	16	23	11	1.78
32306--32559	117	2.2	117	86	0	355	48	16	24	11	1.78
32235--32884	327	2.0	327	93	0	1102	46	16	23	14	1.83
32633--33104	60	8.1	56	78	7	358	50	15	21	13	1.77
32633--33055	171	2.4	172	85	3	553	50	15	21	12	1.77
32633--33104	117	4.1	118	81	6	468	50	15	21	13	1.77
34242--34280	2	19.5	2	100	0	78	48	0	0	51	1.00
38638--38694	21	2.8	21	89	2	80	56	0	1	42	1.10
38729--38784	27	2.0	27	82	10	67	42	3	0	53	1.18
38819--38865	20	2.5	18	78	18	51	53	0	2	44	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38823--38860	20	1.9	20	89	10	60	55	0	0	44	0.99
39186--39220	18	1.9	18	88	0	52	68	0	0	31	0.90
42467--42542	31	2.4	31	80	2	89	26	31	27	14	1.95
42420--42542	63	2.0	63	82	6	151	25	29	28	17	1.97
45359--45397	7	5.3	7	88	11	60	25	25	35	12	1.92
45359--45397	15	2.6	15	100	0	78	25	25	35	12	1.92
45400--45448	13	3.8	13	86	0	71	18	18	44	18	1.87
45387--45422	18	2.0	18	94	0	63	11	22	47	19	1.80
45359--45400	8	5.5	8	91	8	70	23	26	35	14	1.93
47549--47624	31	2.4	31	80	2	89	26	31	27	14	1.95
47502--47624	63	2.0	63	82	6	151	25	29	28	17	1.97
50441--50479	7	5.3	7	88	11	60	25	25	35	12	1.92
50441--50479	15	2.6	15	100	0	78	25	25	35	12	1.92
50482--50530	13	3.8	13	86	0	71	18	18	44	18	1.87
50469--50504	18	2.0	18	94	0	63	11	22	47	19	1.80
50441--50482	8	5.5	8	91	8	70	23	26	35	14	1.93
51762--51832	37	1.9	37	91	0	115	43	23	8	23	1.81
53683--53722	21	1.9	21	84	0	53	17	27	22	32	1.96
56336--56386	24	2.1	24	100	0	102	29	3	19	47	1.68
56522--56593	37	1.9	37	91	0	117	41	20	9	27	1.84
61882--61944	3	21.0	3	87	6	92	33	0	0	66	0.92
63274--63328	3	18.7	3	78	14	53	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63274--63324	14	3.4	14	75	19	50	33	0	0	66	0.92
63283--63326	23	1.9	23	86	9	63	36	0	0	63	0.95
63274--63338	34	1.9	34	87	6	96	35	1	1	61	1.15
63470--63496	2	13.5	2	100	0	54	48	0	0	51	1.00
64014--64048	17	2.0	18	94	5	63	20	11	0	68	1.20
69281--69495	43	5.0	43	93	0	358	26	33	8	31	1.86
70069--70323	75	3.4	76	83	5	347	33	18	19	28	1.95
71634--71757	22	5.6	22	89	0	185	32	16	13	37	1.88
72576--72649	3	25.3	3	81	13	84	31	0	1	67	0.99
72576--72647	33	2.2	33	87	7	101	30	0	1	68	0.99
73883--73923	22	1.9	22	85	5	57	29	0	2	68	1.03
73958--74019	23	2.8	21	76	13	70	32	3	1	62	1.20

Tables:   1

The End!