genome.fa.s9324.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009324.1 Hibiscus syriacus cultivar Beakdansim tig00113088_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69885

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10945--10969	3	8.3	3	100	0	50	68	0	32	0	0.90
13590--13639	23	2.2	23	100	0	100	30	8	16	46	1.75
15416--15479	32	2.0	32	90	0	101	21	28	25	25	1.99
17485--17665	86	2.1	86	97	0	344	30	13	12	42	1.82
18426--19377	394	2.5	391	87	5	1357	40	13	12	33	1.81
19258--19494	119	2.0	119	98	0	456	48	6	8	35	1.60
21889--21946	23	2.5	23	91	2	89	56	0	1	41	1.09
22918--22946	15	1.9	15	100	0	58	10	20	62	6	1.50
26152--26199	18	2.8	18	81	6	55	37	0	6	56	1.25
27418--27476	3	19.7	3	75	13	50	27	8	0	64	1.22
27418--27476	18	3.3	18	76	4	57	27	8	0	64	1.22
29091--29122	10	3.2	10	90	0	55	18	3	0	78	0.89
39326--39996	105	6.4	105	96	0	1189	33	26	18	22	1.96
40500--40547	18	2.8	18	81	6	55	37	0	6	56	1.25
41678--41725	3	15.3	3	87	8	53	35	0	2	62	1.07
41776--41837	18	3.5	17	78	6	61	24	8	0	67	1.17
45071--45095	3	8.3	3	100	0	50	68	0	32	0	0.90
49373--49417	22	2.0	22	86	4	63	13	15	8	62	1.54
56829--56900	32	2.2	32	87	0	99	22	23	27	26	1.99
56947--56992	24	2.0	23	83	12	58	39	15	6	39	1.73
60586--60659	20	3.7	20	80	3	94	39	18	22	18	1.93
60583--60677	41	2.3	41	96	1	174	40	17	23	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60603--60677	20	3.7	21	75	5	82	40	18	24	17	1.91
60674--60759	20	4.2	20	74	2	73	34	24	17	23	1.96
61291--61335	19	2.4	19	92	0	72	48	26	15	8	1.74
61345--61432	33	2.6	33	92	1	140	11	25	25	38	1.89
61400--61457	20	2.9	20	80	10	64	13	24	18	43	1.87
62720--62792	21	3.7	20	72	15	62	31	41	12	15	1.84
63454--63546	42	2.2	42	82	0	114	21	38	16	23	1.92
64929--64964	14	2.6	14	95	0	63	30	0	25	44	1.54
65143--65259	19	6.7	19	73	18	119	12	23	18	45	1.84
65168--65259	33	2.8	33	96	0	166	13	22	18	45	1.84
65143--65259	52	2.3	51	79	7	137	12	23	18	45	1.84
65327--65369	19	2.2	19	87	4	59	20	20	23	34	1.96
65455--65489	14	2.6	13	90	4	52	45	22	0	31	1.53
67346--67412	19	3.5	19	83	4	89	37	23	23	14	1.93
67401--67458	14	3.9	14	79	16	71	48	25	17	8	1.75
67385--67473	32	2.8	32	92	1	142	47	24	17	10	1.79
67385--67473	18	5.3	18	72	21	77	47	24	17	10	1.79
67469--67532	19	3.8	18	72	21	66	10	20	23	45	1.82
67491--67546	14	3.9	14	72	25	53	10	17	25	46	1.80
67482--67531	17	3.1	17	73	26	63	10	20	24	46	1.81
67477--67562	31	2.7	32	87	8	131	12	19	22	45	1.84
67547--67601	20	2.8	19	83	8	65	16	23	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68073--68117	18	2.5	18	85	0	63	15	15	42	26	1.87
69425--69462	20	1.9	20	88	0	58	50	21	15	13	1.78
69723--69766	22	2.0	22	95	0	79	18	15	45	20	1.85

Tables:   1

The End!