Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009325.1 Hibiscus syriacus cultivar Beakdansim tig00113089_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56070
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:1419 original size:14 final size:14
Alignment explanation
Indices: 1408--1434 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1398 AAAAAAAATG
1408 AAAAAAACAAAAAC
1 AAAAAAACAAAAAC
1422 AAAAAAACAAAAA
1 AAAAAAACAAAAA
1435 AAACGCTTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAAAAC
Found at i:2493 original size:103 final size:105
Alignment explanation
Indices: 2211--2876 Score: 1153
Period size: 104 Copynumber: 6.4 Consensus size: 105
2201 AGGTTTTACC
2211 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
2276 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
2316 CAGAGCCAA-TTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
2380 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAA-TT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
2419 CAGAGCCAATTTCAACTTCACAACGAAGG-TATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
2483 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
2523 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
2588 AC-AAGGGACCGCTGGTTGTCAACAAACA-TTCTCAATTT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
2626 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
*
2691 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAAATT
66 ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
* * *
2731 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACACAAGCTCAACTTCACA
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
* * ** * * *
2796 ACGAAGGGGCGGCTGACTGTCAACAAACAATTTCCCAGTTC
66 ACGAAGGGACCGCTGGTTGTCAACAAAC-ATTTCTCAATTT
* ** *
2837 CAGAACCAATTTCAACTTCACGGCGGAGGATATTGGACTC
1 CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTC
2877 GGAACAAGGC
Statistics
Matches: 539, Mismatches: 16, Indels: 11
0.95 0.03 0.02
Matches are distributed among these distances:
103 160 0.30
104 194 0.36
105 141 0.26
106 44 0.08
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
CAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACG
ACGAAGGGACCGCTGGTTGTCAACAAACATTTCTCAATTT
Found at i:4560 original size:3 final size:3
Alignment explanation
Indices: 4554--4583 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
4544 ATATATATAA
*
4554 TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4584 ACGTATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4645 original size:9 final size:9
Alignment explanation
Indices: 4633--4698 Score: 51
Period size: 9 Copynumber: 7.2 Consensus size: 9
4623 TTTACCATTT
4633 TTATTTTTA
1 TTATTTTTA
4642 TTATTATTTA
1 TTATT-TTTA
* *
4652 TTCTTTATA
1 TTATTTTTA
**
4661 TTATCCTTA
1 TTATTTTTA
*
4670 TTATTTCTA
1 TTATTTTTA
**
4679 TTATTACTA
1 TTATTTTTA
*
4688 TTTTTTTTA
1 TTATTTTTA
4697 TT
1 TT
4699 TATTCATGTA
Statistics
Matches: 43, Mismatches: 13, Indels: 2
0.74 0.22 0.03
Matches are distributed among these distances:
9 35 0.81
10 8 0.19
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.70
Consensus pattern (9 bp):
TTATTTTTA
Found at i:5055 original size:21 final size:22
Alignment explanation
Indices: 5013--5055 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
5003 TAATTATTTA
*
5013 TTCCACTTTTATTTTATTTATT
1 TTCCACTTTTATTTTATCTATT
5035 TTCC-CTTTTACTTTTA-CTATT
1 TTCCACTTTTA-TTTTATCTATT
5056 ATTATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.16, C:0.19, G:0.00, T:0.65
Consensus pattern (22 bp):
TTCCACTTTTATTTTATCTATT
Found at i:7863 original size:3 final size:3
Alignment explanation
Indices: 7855--7879 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7845 TGCTTAATTC
7855 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
7880 TACTAACAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:12171 original size:23 final size:23
Alignment explanation
Indices: 12130--12175 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
12120 TTTCATGTCT
* *
12130 TTTTTCGAACAGTTTTTTTTTTC
1 TTTTTCGAACAGCTATTTTTTTC
*
12153 TTTTTCGAACTGCTATTTTTTTC
1 TTTTTCGAACAGCTATTTTTTTC
12176 AACATTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.13, C:0.15, G:0.09, T:0.63
Consensus pattern (23 bp):
TTTTTCGAACAGCTATTTTTTTC
Found at i:16377 original size:20 final size:22
Alignment explanation
Indices: 16354--16403 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
16344 GGGATTTTAG
*
16354 TAAAAGATAA-TAAAG-ATAAA
1 TAAAAGATAATTAAAGTAAAAA
16374 TAAAAG-TAATTAAAGTAAAAA
1 TAAAAGATAATTAAAGTAAAAA
16395 TAAGAAGAT
1 TAA-AAGAT
16404 GAAGATTGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 3 0.12
20 11 0.44
21 7 0.28
22 3 0.12
23 1 0.04
ACGTcount: A:0.66, C:0.00, G:0.12, T:0.22
Consensus pattern (22 bp):
TAAAAGATAATTAAAGTAAAAA
Found at i:19491 original size:33 final size:33
Alignment explanation
Indices: 19453--19515 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
19443 GAGTGTGGAG
* *
19453 GTTCAACTCGGTCAAACTGGTAATTCCTTATAT
1 GTTCAAATCGATCAAACTGGTAATTCCTTATAT
* * *
19486 GTTCAAATCGATCGAGCTTGTAATTCCTTA
1 GTTCAAATCGATCAAACTGGTAATTCCTTA
19516 CGGACCTAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.37
Consensus pattern (33 bp):
GTTCAAATCGATCAAACTGGTAATTCCTTATAT
Found at i:19573 original size:32 final size:32
Alignment explanation
Indices: 19532--19603 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
19522 TAAGGTAACC
* *
19532 ATTGGGTAGGCTCTGAGGCCCCAAGAAACTTT
1 ATTGGGTAGGCTCTCAGGCCCCAAGAAACTCT
* *
19564 ATTGGGTAGGCTCTCAGGCCCTAAGACACTCT
1 ATTGGGTAGGCTCTCAGGCCCCAAGAAACTCT
*
19596 CTTGGGTA
1 ATTGGGTA
19604 AATCATGAGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (32 bp):
ATTGGGTAGGCTCTCAGGCCCCAAGAAACTCT
Found at i:19682 original size:23 final size:21
Alignment explanation
Indices: 19648--19691 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
19638 ATTCATGTGA
19648 TTTAAATAACTAC-ATGATCAT
1 TTTAAATAACTACTA-GATCAT
19669 TTTACAATATACTACTAGATCAT
1 TTTA-AATA-ACTACTAGATCAT
19692 GATTTTGATA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 4 0.20
22 4 0.20
23 11 0.55
24 1 0.05
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.39
Consensus pattern (21 bp):
TTTAAATAACTACTAGATCAT
Found at i:23300 original size:20 final size:20
Alignment explanation
Indices: 23275--23367 Score: 96
Period size: 21 Copynumber: 4.5 Consensus size: 20
23265 TTTTCCCAAT
23275 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
23295 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
23315 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
* ** *
23336 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
23357 TCGCAATGCGA
1 TCGCAATGCGA
23368 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 27 0.47
21 31 0.53
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:23317 original size:41 final size:41
Alignment explanation
Indices: 23272--23367 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
23262 CGATTTTCCC
23272 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
23313 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
23354 AAATCGCAATGCGA
1 AATTCGCAATGCGA
23368 TACTGACTAT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.40, C:0.18, G:0.24, T:0.19
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
Found at i:23321 original size:21 final size:20
Alignment explanation
Indices: 23275--23367 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
23265 TTTTCCCAAT
*
23275 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
23295 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
23315 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
* **
23336 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
23357 TCGCAATGCGA
1 TCGCAATGCGA
23368 TACTGACTAT
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 29 0.50
21 29 0.50
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:23381 original size:20 final size:20
Alignment explanation
Indices: 23356--23449 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
23346 AATTGGGAAA
*
23356 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACTGACT
* * * **
23376 ATCGCAATGCGATAATAAAAA
1 ATCGCAACGCGATACT-GACT
* *
23397 ATCGCAACGAGATACTTACT
1 ATCGCAACGCGATACTGACT
* *
23417 TTCGCAACACGATACTGACT
1 ATCGCAACGCGATACTGACT
*
23437 TTCGCAACGCGAT
1 ATCGCAACGCGAT
23450 TTACTTAGCG
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
20 44 0.76
21 14 0.24
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (20 bp):
ATCGCAACGCGATACTGACT
Found at i:23430 original size:41 final size:41
Alignment explanation
Indices: 23353--23430 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 41
23343 GCGAATTGGG
* * **
23353 AAAATCGCAATGCGATACTGACTATCGCAATGCGATAATAA
1 AAAATCGCAACGAGATACTGACTATCGCAACACGATAATAA
* *
23394 AAAATCGCAACGAGATACTTACTTTCGCAACACGATA
1 AAAATCGCAACGAGATACTGACTATCGCAACACGATA
23431 CTGACTTTCG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 31 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (41 bp):
AAAATCGCAACGAGATACTGACTATCGCAACACGATAATAA
Found at i:24005 original size:19 final size:19
Alignment explanation
Indices: 23981--24025 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
23971 GCAACGAGAT
*
23981 AATCGCAACGCGAAATAAA
1 AATCGCAACGCGAAACAAA
*
24000 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACAAA
24019 AATCGCA
1 AATCGCA
24026 TTGCGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.27, G:0.16, T:0.09
Consensus pattern (19 bp):
AATCGCAACGCGAAACAAA
Found at i:24072 original size:33 final size:33
Alignment explanation
Indices: 24035--24122 Score: 140
Period size: 33 Copynumber: 2.6 Consensus size: 33
24025 ATTGCGATTT
* *
24035 TCATTTCGCGTTGCGATTGTCTGGTCGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
*
24068 TCATTTCGCGTTGCGATTCTCTCGTTGCGATAG
1 TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
24101 TCATTTCCGCGTTGCGATTCTC
1 TCATTT-CGCGTTGCGATTCTC
24123 ATTATCTCGT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 36 0.71
34 15 0.29
ACGTcount: A:0.11, C:0.25, G:0.25, T:0.39
Consensus pattern (33 bp):
TCATTTCGCGTTGCGATTCTCTCGTCGCGATAG
Found at i:24124 original size:20 final size:20
Alignment explanation
Indices: 24090--24147 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
24080 GCGATTCTCT
**
24090 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
24110 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
24130 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
24148 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:25478 original size:21 final size:20
Alignment explanation
Indices: 25407--25479 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 20
25397 CTCCACTTCG
25407 AGAGCCATCACCTCAC--CC
1 AGAGCCATCACCTCACAACC
*
25425 AGAGCCATCACCTGATCAACC
1 AGAGCCATCACCTCA-CAACC
* * *
25446 CGA-CTATACACCTCTACAACG
1 AGAGCCAT-CACCTC-ACAACC
25467 AGAGCCATCACCT
1 AGAGCCATCACCT
25480 ATCCCGTCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
18 14 0.33
19 1 0.02
20 3 0.07
21 20 0.48
22 4 0.10
ACGTcount: A:0.32, C:0.41, G:0.12, T:0.15
Consensus pattern (20 bp):
AGAGCCATCACCTCACAACC
Found at i:26204 original size:42 final size:42
Alignment explanation
Indices: 26144--26266 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
26134 GCCCGACTCG
* * *
26144 CCTATCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * *
26186 CCTATCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCC
1 CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
* * ** * *
26228 ACTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CCTATCATCCCTCAAGA-GTCCACTCCCACCGTTCAAGAG
26267 CCCAATTCAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
42 62 0.94
43 4 0.06
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
CCTATCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCC
Found at i:26224 original size:21 final size:21
Alignment explanation
Indices: 26200--26266 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
26190 TCATTCCTCG
26200 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
26221 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
26242 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
26263 AGAG
1 AGAG
26267 CCCAATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:27639 original size:14 final size:14
Alignment explanation
Indices: 27620--27655 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
27610 ATTGTTTAAT
27620 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
27634 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
27648 TGATTTGT
1 TGATTTGT
27656 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:27856 original size:19 final size:19
Alignment explanation
Indices: 27834--27950 Score: 119
Period size: 19 Copynumber: 6.7 Consensus size: 19
27824 CGAAATTAAA
*
27834 TTCGCGTTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
27853 TTCGCATTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
* *
27872 TTCGCATTGTGA--TTC-C
1 TTCGCATTGCGATTTTCAT
*
27888 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
27905 TTCGCATTGCGA--TTC-T
1 TTCGCATTGCGATTTTCAT
*
27921 CTCG--TTGCGATTTTCAT
1 TTCGCATTGCGATTTTCAT
27938 TTCGCATTGCGAT
1 TTCGCATTGCGAT
27951 AGTAATTTCC
Statistics
Matches: 79, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
14 11 0.14
16 13 0.16
17 13 0.16
19 42 0.53
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.45
Consensus pattern (19 bp):
TTCGCATTGCGATTTTCAT
Found at i:27901 original size:33 final size:33
Alignment explanation
Indices: 27859--27950 Score: 166
Period size: 33 Copynumber: 2.8 Consensus size: 33
27849 TCATTTCGCA
*
27859 TTGCGATTTTCATTTCGCATTGTGATTCCCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCCCTCG
*
27892 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCCCTCG
27925 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
27951 AGTAATTTCC
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.13, C:0.23, G:0.18, T:0.46
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCCCTCG
Found at i:27948 original size:52 final size:51
Alignment explanation
Indices: 27834--27950 Score: 137
Period size: 52 Copynumber: 2.3 Consensus size: 51
27824 CGAAATTAAA
* *
27834 TTCGCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGTGAT
1 TTCGCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGTCAT
* * * *
27885 TCCCTCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCG-ATTTTCAT
1 T-TCGCGTTGCGATTTTCATTTCGCATTGCGATT-T-TCATTGCGCATTGTCAT
*
27938 TTCGCATTGCGAT
1 TTCGCGTTGCGAT
27951 AGTAATTTCC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
51 1 0.02
52 39 0.72
53 8 0.15
54 6 0.11
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.45
Consensus pattern (51 bp):
TTCGCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGTCAT
Found at i:28047 original size:20 final size:19
Alignment explanation
Indices: 28018--28060 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
28008 GGAACAGATC
*
28018 ATAGCAATTTTCTCGTTGCG
1 ATAGCAA-TTTCGCGTTGCG
*
28038 ATAGCCATTTCGCGTTGCG
1 ATAGCAATTTCGCGTTGCG
28057 ATAG
1 ATAG
28061 TCTGTTTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (19 bp):
ATAGCAATTTCGCGTTGCG
Found at i:28165 original size:14 final size:14
Alignment explanation
Indices: 28146--28182 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
28136 CATCAATTAA
28146 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
28160 ACAAATCATCTTTT
1 ACAAATCAACATTT
28174 ACAAATCAA
1 ACAAATCAA
28183 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:30073 original size:20 final size:19
Alignment explanation
Indices: 30038--30104 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
30028 GAAACTTAAA
30038 ATCGCAACGCGAAATGACT
1 ATCGCAACGCGAAATGACT
*
30057 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
30077 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
30096 ATCGCAACG
1 ATCGCAACG
30105 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 24 0.59
20 17 0.41
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:30112 original size:14 final size:14
Alignment explanation
Indices: 30093--30150 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
30083 ATGCGAAATG
30093 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
30107 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
30123 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
30139 AAAATCGCAACG
1 AAAATCGCAACG
30151 CGAAACACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.48, C:0.26, G:0.17, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:30135 original size:32 final size:33
Alignment explanation
Indices: 30077--30155 Score: 142
Period size: 32 Copynumber: 2.4 Consensus size: 33
30067 GGAAATGGCT
*
30077 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
30110 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
30142 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
30156 CACAAATCGC
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
32 30 0.67
33 15 0.33
ACGTcount: A:0.47, C:0.24, G:0.19, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:30203 original size:14 final size:14
Alignment explanation
Indices: 30184--30240 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
30174 TTTCATTTCG
30184 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
30198 CGTTGCGATTCATT-T
1 CGTTGCGATT--TTGT
30213 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
*
30229 CGTTACGATTTT
1 CGTTGCGATTTT
30241 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 21 0.57
15 3 0.08
16 3 0.08
17 10 0.27
ACGTcount: A:0.11, C:0.18, G:0.25, T:0.47
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:30220 original size:17 final size:17
Alignment explanation
Indices: 30175--30224 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
30165 CATTGCGATT
30175 TTCATTTCGCGTTGCGA
1 TTCATTTCGCGTTGCGA
30192 -T--TTT-GTCGTTGCGA
1 TTCATTTCG-CGTTGCGA
30206 TTCATTTCGCGTTGCGA
1 TTCATTTCGCGTTGCGA
30223 TT
1 TT
30225 TTGTCGTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 1 0.04
14 11 0.39
15 1 0.04
16 1 0.04
17 13 0.46
18 1 0.04
ACGTcount: A:0.10, C:0.20, G:0.24, T:0.46
Consensus pattern (17 bp):
TTCATTTCGCGTTGCGA
Found at i:30248 original size:33 final size:33
Alignment explanation
Indices: 30170--30256 Score: 142
Period size: 31 Copynumber: 2.7 Consensus size: 33
30160 AATCGCATTG
*
30170 CGATTTTCATTTCGCGTTGCGATTTTGTCGTTG
1 CGATTTTCATTTCGCGTTGCGATTTTGTCGTTA
30203 CGA--TTCATTTCGCGTTGCGATTTTGTCGTTA
1 CGATTTTCATTTCGCGTTGCGATTTTGTCGTTA
*
30234 CGATTTTCATTTCGCATTGCGAT
1 CGATTTTCATTTCGCGTTGCGAT
30257 AGCCATTCCG
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
31 30 0.60
33 20 0.40
ACGTcount: A:0.13, C:0.20, G:0.22, T:0.46
Consensus pattern (33 bp):
CGATTTTCATTTCGCGTTGCGATTTTGTCGTTA
Found at i:30263 original size:19 final size:19
Alignment explanation
Indices: 30241--30283 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
30231 TTACGATTTT
30241 CATTTCGCATTGCGATAGC
1 CATTTCGCATTGCGATAGC
* * *
30260 CATTCCGCGTTGCGATAGT
1 CATTTCGCATTGCGATAGC
30279 CATTT
1 CATTT
30284 TCGTGTTGCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.35
Consensus pattern (19 bp):
CATTTCGCATTGCGATAGC
Found at i:30793 original size:18 final size:18
Alignment explanation
Indices: 30767--30811 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
30757 GTCGATCAGA
*
30767 TGATGGCTCTAGGTGAGG
1 TGATGGCTCTAGGCGAGG
* *
30785 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTAGGCGAGG
30803 TGATGGCTC
1 TGATGGCTC
30812 CCGAATTGGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.16, G:0.42, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTAGGCGAGG
Found at i:32155 original size:20 final size:20
Alignment explanation
Indices: 32130--32167 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
32120 AATAGTTTCT
32130 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
32150 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
32168 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:32456 original size:22 final size:22
Alignment explanation
Indices: 32431--32474 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
32421 GATTTAGATA
32431 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
32453 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
32475 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:32687 original size:20 final size:20
Alignment explanation
Indices: 32662--32755 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
32652 GATTATGTAT
32662 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
32682 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
* *** * *
32702 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-AAGTCAG
* *
32723 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
32743 TATCGCATTGCGA
1 TATCGCGTTGCGA
32756 TTTTCCCAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:32756 original size:20 final size:20
Alignment explanation
Indices: 32642--32756 Score: 88
Period size: 20 Copynumber: 5.7 Consensus size: 20
32632 CGCTTTGAAA
*
32642 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* *
32663 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
32683 ATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATAGTCAGT
* * ** * *
32703 ATCTCGTTGCGATTTTTTATT
1 ATCGCATTGCGA-TAGTCAGT
32724 ATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
32744 ATCGCATTGCGAT
1 ATCGCATTGCGAT
32757 TTTCCCAATT
Statistics
Matches: 76, Mismatches: 16, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
19 2 0.03
20 50 0.66
21 24 0.32
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:32775 original size:41 final size:41
Alignment explanation
Indices: 32684--32818 Score: 130
Period size: 41 Copynumber: 3.3 Consensus size: 41
32674 AAAGTCAGTA
* * * ** *
32684 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
32724 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* ** *
32766 TCGCGTTGCGAT-TTACTTATTCGCATTGCGAATTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
32807 TCGCGTTGCGAT
1 TCGCGTTGCGAT
32819 TTACTTATTC
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 3 0.04
41 73 0.94
42 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:32789 original size:20 final size:20
Alignment explanation
Indices: 32745--32837 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
32735 ATAGTCAGTA
* **
32745 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
32766 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
32786 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
32807 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
32827 TCGCATTGCGA
1 TCGCATTGCGA
32838 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:32819 original size:41 final size:41
Alignment explanation
Indices: 32745--32840 Score: 183
Period size: 41 Copynumber: 2.3 Consensus size: 41
32735 ATAGTCAGTA
*
32745 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
32786 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
32827 TCGCATTGCGAATT
1 TCGCATTGCGAATT
32841 GGGAAAATCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:33967 original size:19 final size:18
Alignment explanation
Indices: 33924--33967 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
33914 CTTAATTACA
*
33924 AAAATTAAAAATTTAATT
1 AAAATTAAAAATTTAATC
*
33942 AAAATTAAAATTTTCAATC
1 AAAATTAAAAATTT-AATC
*
33961 CAAATTA
1 AAAATTA
33968 CTTACCTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATTAAAAATTTAATC
Found at i:35422 original size:3 final size:3
Alignment explanation
Indices: 35414--35457 Score: 61
Period size: 3 Copynumber: 14.0 Consensus size: 3
35404 TAAAACTAAA
*
35414 AAT AAT AAT ATT AAT AAT ATAT AAAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT -AAT AAT AAT AAT AAT AAT AAT
35458 TTTATATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
3 32 0.86
4 4 0.11
5 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
AAT
Found at i:35452 original size:29 final size:28
Alignment explanation
Indices: 35414--35492 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
35404 TAAAACTAAA
35414 AATAATAATATTAATAATATATAAATAAT
1 AATAATAATATTAATAATATATAAAT-AT
* **
35443 AATAATAATAATAATTTTATAT-AATAT
1 AATAATAATATTAATAATATATAAATAT
* *
35470 AAAAATACTATATAA-AATATATA
1 AATAATAATAT-TAATAATATATA
35493 TTATACTGTA
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
27 15 0.38
28 6 0.15
29 19 0.47
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (28 bp):
AATAATAATATTAATAATATATAAATAT
Found at i:35492 original size:9 final size:10
Alignment explanation
Indices: 35415--35492 Score: 69
Period size: 9 Copynumber: 8.3 Consensus size: 10
35405 AAAACTAAAA
35415 ATAATAATAT
1 ATAATAATAT
35425 -TAATAATAT
1 ATAATAATAT
35434 ATAAATAATA-
1 AT-AATAATAT
35444 ATAATAATA-
1 ATAATAATAT
**
35453 ATAATTTTAT
1 ATAATAATAT
35463 ATAAT-ATA-
1 ATAATAATAT
* *
35471 AAAATACTAT
1 ATAATAATAT
35481 ATAA-AATAT
1 ATAATAATAT
35490 ATA
1 ATA
35493 TTATACTGTA
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
8 4 0.07
9 34 0.61
10 11 0.20
11 7 0.12
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (10 bp):
ATAATAATAT
Found at i:35952 original size:18 final size:19
Alignment explanation
Indices: 35908--35953 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
35898 AAGAAAAAAA
35908 GTTTTAA-AATTTTTGATT
1 GTTTTAATAATTTTTGATT
** *
35926 CATTGAATAA-TTTTGATT
1 GTTTTAATAATTTTTGATT
35944 GTTTTAATAA
1 GTTTTAATAA
35954 AATGAATTTT
Statistics
Matches: 21, Mismatches: 6, Indels: 2
0.72 0.21 0.07
Matches are distributed among these distances:
18 19 0.90
19 2 0.10
ACGTcount: A:0.33, C:0.02, G:0.11, T:0.54
Consensus pattern (19 bp):
GTTTTAATAATTTTTGATT
Found at i:44079 original size:17 final size:17
Alignment explanation
Indices: 44041--44079 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
44031 TAAAAAGTCA
*
44041 GTATATATAATTTACAT
1 GTATATATAATTTAAAT
44058 GTATATATAATGTTAAAT
1 GTATATATAAT-TTAAAT
44076 -TATA
1 GTATA
44080 ATTATTTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.46
Consensus pattern (17 bp):
GTATATATAATTTAAAT
Found at i:44565 original size:52 final size:52
Alignment explanation
Indices: 44486--44591 Score: 167
Period size: 52 Copynumber: 2.0 Consensus size: 52
44476 GATGTCATCC
* *
44486 ATTAATTGATCGAGTGACCGAAAATGCTCATATTATCCCATCCAAAAGTAGA
1 ATTAATTGATCGAGTGAACGAAAATGCTCATATCATCCCATCCAAAAGTAGA
* * *
44538 ATTAATTGATCGAGTGAACTAAGATGCTCGTATCATCCCATCCAAAAGTAGA
1 ATTAATTGATCGAGTGAACGAAAATGCTCATATCATCCCATCCAAAAGTAGA
44590 AT
1 AT
44592 GACTTGGACC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (52 bp):
ATTAATTGATCGAGTGAACGAAAATGCTCATATCATCCCATCCAAAAGTAGA
Done.