Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009326.1 Hibiscus syriacus cultivar Beakdansim tig00113090_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63951

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1916--1970
23
2.4
23
74
17
60
12
27
41
18
1.86
2014--2089
29
2.6
30
87
8
111
31
23
25
19
1.98
2361--2399
20
2.0
20
89
0
60
33
23
10
33
1.88
4241--4279
10
3.8
10
86
6
60
35
0
0
64
0.94
4236--4278
21
2.0
21
100
0
86
37
0
0
62
0.95
4236--4300
21
2.9
23
86
8
82
41
0
0
58
0.98
4945--5188
130
1.9
130
92
0
407
33
15
9
42
1.78
10903--10938
7
5.1
7
93
0
63
86
2
0
11
0.68
10948--11154
73
3.1
64
81
14
181
46
6
2
43
1.45
11024--11295
74
3.7
73
88
5
361
44
7
4
44
1.51
11007--11297
36
7.7
37
81
13
321
44
7
3
43
1.51
11887--12693
84
9.7
84
77
6
820
25
20
24
29
1.99
11884--12693
165
4.9
164
83
6
898
25
20
23
29
1.99
11887--12698
248
3.3
247
84
3
988
25
20
24
29
1.99
13869--14064
95
2.1
94
86
3
277
31
18
17
32
1.94
17969--18002
14
2.5
13
86
9
50
76
2
8
11
1.12
18031--18084
21
2.6
21
76
8
65
74
3
9
12
1.20
18020--18090
25
3.0
24
70
19
69
74
4
8
12
1.19
18161--18234
26
2.9
26
80
11
66
60
5
4
29
1.37
18202--18255
3
18.3
3
92
3
92
66
0
1
31
1.02
23416--23440
9
2.8
9
100
0
50
36
32
20
12
1.89
25798--25836
21
1.9
21
89
5
62
38
5
20
35
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27901--27933
16
2.0
17
88
5
50
6
3
6
84
0.84
29405--29467
20
3.1
20
83
2
81
30
17
22
30
1.96
30436--30489
21
2.5
21
93
3
90
42
29
7
20
1.79
32400--32449
22
2.3
22
92
0
82
30
16
10
44
1.80
35503--35581
10
8.3
9
78
9
77
15
27
29
27
1.96
35502--35579
19
4.1
19
80
14
88
16
25
29
28
1.97
35485--35581
29
3.3
29
84
8
117
15
26
27
29
1.96
35578--35657
5
14.8
5
75
14
70
20
51
21
7
1.71
35578--35664
22
4.0
22
96
0
165
19
49
21
9
1.76
35654--35684
7
4.4
7
95
0
53
19
29
25
25
1.99
42834--42900
29
2.3
29
87
10
93
16
25
26
31
1.96
42925--43004
5
14.8
5
75
14
70
20
51
21
7
1.71
42925--43011
22
4.0
22
96
0
165
19
49
21
9
1.76
43001--43031
7
4.4
7
95
0
53
19
29
25
25
1.99
44904--44974
31
2.3
31
92
4
117
46
12
7
33
1.69
45242--45295
12
4.6
12
83
4
74
11
16
48
24
1.79
45293--45373
24
3.3
25
75
16
71
45
0
0
54
0.99
46228--46299
30
2.4
30
97
0
135
37
18
9
34
1.83
46857--47232
196
2.0
189
88
5
558
21
13
30
34
1.92
48754--48780
14
1.9
14
100
0
54
29
7
0
62
1.22
50512--50573
31
2.0
30
87
3
88
46
4
4
43
1.46
50514--50585
31
2.3
30
81
6
81
43
6
6
43
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51377--51482
51
2.1
51
90
0
167
20
18
32
28
1.97
57588--57645
21
2.7
22
89
2
82
67
1
0
31
1.01
57593--57650
5
11.0
5
78
10
53
70
1
0
27
0.97
60761--60821
15
3.9
15
75
14
52
49
32
11
6
1.65
60788--60858
16
4.5
16
66
3
54
52
25
9
12
1.70
60831--60890
30
2.0
30
90
0
93
51
18
10
20
1.74
62173--62269
22
4.9
19
80
13
90
16
23
37
22
1.94

Tables:   1

The End!