genome.fa.s9327.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009327.1 Hibiscus syriacus cultivar Beakdansim tig00113092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52748

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1582--1608	14	1.9	14	100	0	54	29	7	0	62	1.22
3345--3406	31	2.0	30	87	3	88	46	4	4	43	1.46
3347--3418	31	2.3	30	81	6	81	43	6	6	43	1.58
4221--4326	51	2.1	51	90	0	167	20	18	32	28	1.97
4233--4342	51	2.2	51	84	0	148	20	23	29	26	1.99
8006--8092	35	2.5	33	76	22	88	55	9	6	28	1.57
10453--10511	21	2.7	21	89	5	82	66	1	0	32	1.02
10459--10518	16	4.1	15	71	18	54	68	1	0	30	0.99
10481--10518	17	2.2	18	90	4	60	71	2	0	26	1.00
13026--13066	20	2.0	20	85	0	55	19	4	9	65	1.40
13674--13739	16	4.2	16	75	11	64	48	31	10	9	1.69
13724--13807	32	2.6	32	88	0	114	53	17	9	19	1.70
15103--15206	21	4.9	21	84	9	131	15	25	37	21	1.93
15103--15204	22	4.8	20	81	12	107	15	25	38	20	1.92
15103--15189	41	2.1	41	87	4	122	13	24	41	20	1.89
17934--18039	21	5.0	21	85	4	151	15	25	38	20	1.92
20766--20826	21	2.9	21	90	2	86	19	26	37	16	1.93
22964--22997	12	2.8	12	90	0	50	11	35	2	50	1.54
22991--23021	12	2.6	12	100	0	62	22	19	6	51	1.69
28951--28990	16	2.4	16	87	4	53	57	10	12	20	1.63
30357--30429	20	3.6	20	70	3	65	27	20	26	26	1.99
30371--30512	42	3.4	42	85	2	180	32	23	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30419--30494	22	3.5	22	65	20	61	36	26	17	19	1.94
30473--30638	85	2.0	85	82	0	206	33	18	23	24	1.96
30531--30887	145	2.5	144	86	2	509	31	16	26	26	1.96
30899--31012	42	2.7	42	83	2	149	35	21	19	23	1.95
31056--31309	52	4.7	52	78	6	222	42	18	10	29	1.83
31113--31310	52	3.8	53	81	4	233	42	18	10	29	1.82
31114--31305	105	1.8	105	84	2	260	41	18	10	29	1.83
31306--31388	39	2.1	39	90	0	130	38	16	15	28	1.90
31433--31682	131	1.9	129	86	3	349	39	14	20	26	1.90
31424--31685	65	4.1	64	78	7	271	38	13	19	28	1.89
31640--31874	101	2.3	101	78	7	253	41	12	15	30	1.84
31842--31910	35	1.9	36	88	2	104	39	13	24	23	1.90
31843--31919	35	2.2	35	83	6	93	40	15	20	23	1.91
33081--33130	14	3.6	14	86	7	68	4	14	6	76	1.13
33070--33136	24	2.6	25	80	17	68	4	13	5	76	1.13
33069--33136	27	2.5	26	83	9	75	4	13	5	76	1.12
34384--34433	14	3.5	14	79	12	57	52	12	18	18	1.75
36018--36044	11	2.5	11	100	0	54	66	0	7	25	1.17
39218--39376	35	4.6	35	74	10	132	42	15	21	21	1.89
39946--39978	12	2.5	13	85	14	50	9	12	12	66	1.44
39953--39978	12	2.2	12	100	0	52	7	15	7	69	1.35
40200--40248	19	2.7	17	84	9	53	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49606--49645	20	2.0	21	85	5	55	22	17	22	37	1.94
51811--51885	35	2.1	35	80	4	89	40	17	17	25	1.91

Tables:   1

The End!