Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009328.1 Hibiscus syriacus cultivar Beakdansim tig00113093_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80246

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12614--12816
40
5.0
41
79
8
204
36
17
17
28
1.93
17024--17066
16
2.6
17
74
7
52
44
0
0
55
0.99
17526--17554
15
1.9
15
100
0
58
41
13
13
31
1.84
25061--25104
22
2.1
21
83
8
54
77
2
20
0
0.88
25863--26369
105
5.0
104
92
5
776
34
25
17
22
1.96
32942--33015
29
2.6
29
100
0
148
40
21
10
27
1.86
36325--36364
21
1.9
21
94
0
71
25
27
12
35
1.92
43370--43406
13
2.7
14
91
8
67
24
29
29
16
1.96
43396--43453
17
3.4
17
97
0
107
15
24
43
17
1.87
43370--43406
7
5.4
7
93
6
67
24
29
29
16
1.96
43447--43517
19
3.7
19
84
1
88
28
26
25
19
1.99
43447--43516
9
7.3
9
70
12
50
28
27
25
18
1.98
50669--50698
7
4.4
7
91
8
53
23
30
30
16
1.96
50673--50698
13
2.0
13
100
0
52
23
30
30
15
1.95
50675--50715
12
3.3
12
89
3
55
19
26
36
17
1.94
50717--50787
19
3.7
20
81
5
83
25
28
26
19
1.99
50717--50786
9
7.3
9
70
12
50
25
28
27
18
1.98
52688--52716
13
2.3
13
94
5
51
10
17
58
13
1.62
59073--59111
9
4.2
9
80
6
51
15
23
30
30
1.95
59120--59168
17
2.9
16
90
9
71
18
46
22
12
1.82
68857--68896
21
1.9
21
94
0
71
25
27
12
35
1.92
70332--70362
15
2.1
15
100
0
62
41
12
25
19
1.87

Tables:   1

The End!