Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009329.1 Hibiscus syriacus cultivar Beakdansim tig00113094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 163802
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:6118 original size:6 final size:7
Alignment explanation
Indices: 6096--6125 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
6086 GTCAAAGAAA
6096 GTCAACG
1 GTCAACG
6103 GTCAACG
1 GTCAACG
6110 GTC-ACG
1 GTCAACG
6116 GTCAACG
1 GTCAACG
6123 GTC
1 GTC
6126 GGGTCAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.17
Consensus pattern (7 bp):
GTCAACG
Found at i:6118 original size:13 final size:13
Alignment explanation
Indices: 6100--6125 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6090 AAGAAAGTCA
6100 ACGGTCAACGGTC
1 ACGGTCAACGGTC
6113 ACGGTCAACGGTC
1 ACGGTCAACGGTC
6126 GGGTCAACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
ACGGTCAACGGTC
Found at i:6132 original size:12 final size:12
Alignment explanation
Indices: 6102--6142 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
6092 GAAAGTCAAC
*
6102 GGTCAACGGTCAC
1 GGTCAACGGTC-G
6115 GGTCAACGGTCG
1 GGTCAACGGTCG
*
6127 GGTCAACAGTCG
1 GGTCAACGGTCG
6139 GGTC
1 GGTC
6143 GGGTCAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.20, C:0.27, G:0.37, T:0.17
Consensus pattern (12 bp):
GGTCAACGGTCG
Found at i:6168 original size:19 final size:20
Alignment explanation
Indices: 6144--6214 Score: 83
Period size: 19 Copynumber: 3.6 Consensus size: 20
6134 AGTCGGGTCG
*
6144 GGTCAACCCGGTTCAG-ACC
1 GGTCAAACCGGTTCAGAACC
*
6163 GGTCAAACTGGTTC-GAACC
1 GGTCAAACCGGTTCAGAACC
* * *
6182 GGTCAAGCCGGTTCAAAACT
1 GGTCAAACCGGTTCAGAACC
6202 GGTCAAACCGGTT
1 GGTCAAACCGGTT
6215 TTCCAGCAGC
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
18 1 0.02
19 27 0.63
20 15 0.35
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (20 bp):
GGTCAAACCGGTTCAGAACC
Found at i:6209 original size:9 final size:9
Alignment explanation
Indices: 6144--6213 Score: 50
Period size: 9 Copynumber: 7.3 Consensus size: 9
6134 AGTCGGGTCG
*
6144 GGTCAACCC
1 GGTCAAACC
*
6153 GGTTCAGACC
1 GG-TCAAACC
*
6163 GGTCAAACT
1 GGTCAAACC
*
6172 GGTTCGAACC
1 GG-TCAAACC
*
6182 GGTCAAGCC
1 GGTCAAACC
*
6191 GGTTCAAAACT
1 GG-TC-AAACC
6202 GGTCAAACC
1 GGTCAAACC
6211 GGT
1 GGT
6214 TTTCCAGCAG
Statistics
Matches: 46, Mismatches: 11, Indels: 8
0.71 0.17 0.12
Matches are distributed among these distances:
9 23 0.50
10 18 0.39
11 5 0.11
ACGTcount: A:0.26, C:0.29, G:0.27, T:0.19
Consensus pattern (9 bp):
GGTCAAACC
Found at i:8130 original size:12 final size:13
Alignment explanation
Indices: 8115--8143 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8105 TTTATCTGGT
8115 CGGGT-ATCGGGG
1 CGGGTAATCGGGG
8127 CGGGTAATCGGGG
1 CGGGTAATCGGGG
8140 CGGG
1 CGGG
8144 GATTACCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.10, C:0.17, G:0.59, T:0.14
Consensus pattern (13 bp):
CGGGTAATCGGGG
Found at i:14534 original size:9 final size:9
Alignment explanation
Indices: 14518--14556 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
14508 GCTGGGAAAA
14518 ACCGGTTTG
1 ACCGGTTTG
*
14527 ATCGGTTTG
1 ACCGGTTTG
*
14536 ACCGGTTCG
1 ACCGGTTTG
14545 AACCGGTTTG
1 -ACCGGTTTG
14555 AC
1 AC
14557 TGGTCTGAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:14598 original size:17 final size:17
Alignment explanation
Indices: 14566--14614 Score: 80
Period size: 17 Copynumber: 2.8 Consensus size: 17
14556 CTGGTCTGAA
14566 CCGACCCGTCTGACCCGAC
1 CCGA-CCGT-TGACCCGAC
14585 CCGACCGTTGACCCGAC
1 CCGACCGTTGACCCGAC
14602 CCGACCGTTGACC
1 CCGACCGTTGACC
14615 GTTGACCGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 22 0.73
18 4 0.13
19 4 0.13
ACGTcount: A:0.16, C:0.49, G:0.22, T:0.12
Consensus pattern (17 bp):
CCGACCGTTGACCCGAC
Found at i:24410 original size:21 final size:21
Alignment explanation
Indices: 24381--24420 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
24371 GTGGAGGCAT
*
24381 TCCCGAGTTACATTTGTCACA
1 TCCCAAGTTACATTTGTCACA
24402 TCCCAAGTTACATTTGTCA
1 TCCCAAGTTACATTTGTCA
24421 AGATGTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (21 bp):
TCCCAAGTTACATTTGTCACA
Found at i:25890 original size:15 final size:15
Alignment explanation
Indices: 25870--25900 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
25860 TTGTTCCTTG
25870 ATGGGACTAAAGTCA
1 ATGGGACTAAAGTCA
25885 ATGGGACTAAAGTCA
1 ATGGGACTAAAGTCA
25900 A
1 A
25901 GTTGGAGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.19
Consensus pattern (15 bp):
ATGGGACTAAAGTCA
Found at i:36756 original size:36 final size:36
Alignment explanation
Indices: 36700--36769 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
36690 GATTACCAAA
* * *
36700 CCCGTCCCCGTCCCCGTTTAGCATAAACGGTTTTTT
1 CCCGTCCCCATCCCCATTTAGCATAAACGATTTTTT
*
36736 CCCGTCCCCATCTCCATTTAGCATAAACGATTTT
1 CCCGTCCCCATCCCCATTTAGCATAAACGATTTT
36770 CCCCATTCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.19, C:0.36, G:0.13, T:0.33
Consensus pattern (36 bp):
CCCGTCCCCATCCCCATTTAGCATAAACGATTTTTT
Found at i:45917 original size:21 final size:21
Alignment explanation
Indices: 45891--45937 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
45881 TAATTTTCAA
45891 ACATTGTTGCACCTAATTTTG
1 ACATTGTTGCACCTAATTTTG
45912 ACATTGTTGCACCTAATTTTG
1 ACATTGTTGCACCTAATTTTG
45933 ACATT
1 ACATT
45938 ACAATATTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.43
Consensus pattern (21 bp):
ACATTGTTGCACCTAATTTTG
Found at i:50567 original size:21 final size:21
Alignment explanation
Indices: 50541--50588 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
50531 TAATTTTCAA
50541 ACATTGTTGCACCTAATTTTG
1 ACATTGTTGCACCTAATTTTG
50562 ACATTGTTGCACCTAATTTTG
1 ACATTGTTGCACCTAATTTTG
50583 ACATTG
1 ACATTG
50589 CAATATTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.42
Consensus pattern (21 bp):
ACATTGTTGCACCTAATTTTG
Found at i:53773 original size:20 final size:20
Alignment explanation
Indices: 53732--53773 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
53722 ATTTTAAGAA
* *
53732 TTATTTTTAGGAATCATCTT
1 TTATTTTTAAGAATCATATT
*
53752 TTATTTTTAAGAATTATATT
1 TTATTTTTAAGAATCATATT
53772 TT
1 TT
53774 CCTTGTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.60
Consensus pattern (20 bp):
TTATTTTTAAGAATCATATT
Found at i:53917 original size:25 final size:24
Alignment explanation
Indices: 53889--53941 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 24
53879 AAATTATCTC
* *
53889 TTTTCTTTTCTTTTCAAGTTTTCATT
1 TTTTATTTTATTTT-AAGTTTT-ATT
53915 TTTTATTTTATTTTAAGTTTTATT
1 TTTTATTTTATTTTAAGTTTTATT
53939 TTT
1 TTT
53942 AAACATGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 6 0.24
25 7 0.28
26 12 0.48
ACGTcount: A:0.15, C:0.08, G:0.04, T:0.74
Consensus pattern (24 bp):
TTTTATTTTATTTTAAGTTTTATT
Found at i:53941 original size:13 final size:13
Alignment explanation
Indices: 53894--53943 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
53884 ATCTCTTTTC
* *
53894 TTTTCTTTTCAAG
1 TTTTATTTTTAAG
*
53907 TTTTCATTTTTTA-
1 TTTT-ATTTTTAAG
53920 TTTTA-TTTTAAG
1 TTTTATTTTTAAG
53932 TTTTATTTTTAA
1 TTTTATTTTTAA
53944 ACATGTTAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 5 0.17
12 6 0.20
13 14 0.47
14 5 0.17
ACGTcount: A:0.20, C:0.06, G:0.04, T:0.70
Consensus pattern (13 bp):
TTTTATTTTTAAG
Found at i:57877 original size:31 final size:31
Alignment explanation
Indices: 57839--57913 Score: 150
Period size: 31 Copynumber: 2.4 Consensus size: 31
57829 TTATAACGTA
57839 TAATGATCATTTTATAATAGCTCGATAAATT
1 TAATGATCATTTTATAATAGCTCGATAAATT
57870 TAATGATCATTTTATAATAGCTCGATAAATT
1 TAATGATCATTTTATAATAGCTCGATAAATT
57901 TAATGATCATTTT
1 TAATGATCATTTT
57914 GTACCTTCTA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (31 bp):
TAATGATCATTTTATAATAGCTCGATAAATT
Found at i:61247 original size:20 final size:20
Alignment explanation
Indices: 61218--61269 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
61208 AAATAACCAA
61218 CAAATTCGCAACACAGTTTC
1 CAAATTCGCAACACAGTTTC
*
61238 CAATTTCGCAACACAGTTTC
1 CAAATTCGCAACACAGTTTC
61258 CAAATTCGCAAC
1 CAAATTCGCAAC
61270 TAGAATTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.35, C:0.31, G:0.10, T:0.25
Consensus pattern (20 bp):
CAAATTCGCAACACAGTTTC
Found at i:61339 original size:21 final size:22
Alignment explanation
Indices: 61287--61353 Score: 79
Period size: 21 Copynumber: 3.2 Consensus size: 22
61277 TCTTTTCCGT
61287 AACGCGATTTT-TCAAATTCGC
1 AACGCGATTTTCTCAAATTCGC
* * *
61308 AACTC-AGTTTCTGAAA-TCGC
1 AACGCGATTTTCTCAAATTCGC
61328 AACGCGATTTTC-CAAATTCGC
1 AACGCGATTTTCTCAAATTCGC
61349 AACGC
1 AACGC
61354 TAATTTCGCG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 15 0.41
21 22 0.59
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (22 bp):
AACGCGATTTTCTCAAATTCGC
Found at i:61344 original size:20 final size:21
Alignment explanation
Indices: 61218--61353 Score: 77
Period size: 20 Copynumber: 6.7 Consensus size: 21
61208 AAATAACCAA
* *
61218 CAAATTCGCAACAC-AGTTTC
1 CAAATTCGCAACGCGATTTTC
* * *
61238 CAATTTCGCAACAC-AGTTTC
1 CAAATTCGCAACGCGATTTTC
** *
61258 CAAATTCGCAACTAGAATTT-
1 CAAATTCGCAACGCGATTTTC
** * *
61278 C-TTTTCCGTAACGCGATTTTT
1 CAAATT-CGCAACGCGATTTTC
* *
61299 CAAATTCGCAACTC-AGTTTC
1 CAAATTCGCAACGCGATTTTC
*
61319 TGAAA-TCGCAACGCGATTTTC
1 -CAAATTCGCAACGCGATTTTC
61340 CAAATTCGCAACGC
1 CAAATTCGCAACGC
61354 TAATTTCGCG
Statistics
Matches: 88, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
19 2 0.02
20 56 0.64
21 28 0.32
22 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.30
Consensus pattern (21 bp):
CAAATTCGCAACGCGATTTTC
Found at i:61380 original size:34 final size:36
Alignment explanation
Indices: 61337--61495 Score: 128
Period size: 40 Copynumber: 4.3 Consensus size: 36
61327 CAACGCGATT
*
61337 TTCCAAATTCGCAACGCTAA-T-TTCGCGACGCTAA
1 TTCCAAATTCGCGACGCTAATTATTCGCGACGCTAA
* * * * *
61371 TTCCGAATTCGTGACGCTAATT-TT-GTGATGTTAA
1 TTCCAAATTCGCGACGCTAATTATTCGCGACGCTAA
**
61405 TTCCTTATTCGCGACGCTAATTCCGAATTCGCGACGCTAA
1 TTCCAAATTCGCGACGCTAATT----ATTCGCGACGCTAA
*
61445 TTCCAAATTCGCGATGCTAATTCCAAATTCGCGACGCTAA
1 TTCCAAATTCGCGACGCTAATT----ATTCGCGACGCTAA
*
61485 TTCCGAATTCG
1 TTCCAAATTCG
61496 TGATTTGAAA
Statistics
Matches: 101, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
34 43 0.43
35 3 0.03
39 2 0.02
40 53 0.52
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (36 bp):
TTCCAAATTCGCGACGCTAATTATTCGCGACGCTAA
Found at i:61386 original size:20 final size:20
Alignment explanation
Indices: 61358--61495 Score: 153
Period size: 20 Copynumber: 7.2 Consensus size: 20
61348 CAACGCTAAT
61358 TTCGCGACGCTAATTCCGAA
1 TTCGCGACGCTAATTCCGAA
*
61378 TTCGTGACGCTAATT-----
1 TTCGCGACGCTAATTCCGAA
* * * **
61393 TT-GTGATGTTAATTCCTTA
1 TTCGCGACGCTAATTCCGAA
61412 TTCGCGACGCTAATTCCGAA
1 TTCGCGACGCTAATTCCGAA
*
61432 TTCGCGACGCTAATTCCAAA
1 TTCGCGACGCTAATTCCGAA
* *
61452 TTCGCGATGCTAATTCCAAA
1 TTCGCGACGCTAATTCCGAA
61472 TTCGCGACGCTAATTCCGAA
1 TTCGCGACGCTAATTCCGAA
61492 TTCG
1 TTCG
61496 TGATTTGAAA
Statistics
Matches: 100, Mismatches: 12, Indels: 12
0.81 0.10 0.10
Matches are distributed among these distances:
14 10 0.10
15 2 0.02
19 2 0.02
20 86 0.86
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (20 bp):
TTCGCGACGCTAATTCCGAA
Found at i:61477 original size:60 final size:54
Alignment explanation
Indices: 61358--61495 Score: 177
Period size: 60 Copynumber: 2.4 Consensus size: 54
61348 CAACGCTAAT
* * * **
61358 TTCGCGACGCTAATTCCGAATTCGTGACGCTAATTTTGTGATGTTAATTCCTTA
1 TTCGCGACGCTAATTCCGAATTCGCGACGCTAATTTTGCGATGCTAATTCCAAA
61412 TTCGCGACGCTAATTCCGAATTCGCGACGCTAATTCCAAATTCGCGATGCTAATTCCAAA
1 TTCGCGACGCTAATTCCGAATTCGCGACGCTAATT-----TT-GCGATGCTAATTCCAAA
61472 TTCGCGACGCTAATTCCGAATTCG
1 TTCGCGACGCTAATTCCGAATTCG
61496 TGATTTGAAA
Statistics
Matches: 73, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
54 34 0.47
59 2 0.03
60 37 0.51
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (54 bp):
TTCGCGACGCTAATTCCGAATTCGCGACGCTAATTTTGCGATGCTAATTCCAAA
Found at i:61562 original size:20 final size:20
Alignment explanation
Indices: 61537--61645 Score: 104
Period size: 20 Copynumber: 5.8 Consensus size: 20
61527 AGCGTCACGA
*
61537 AATTAGCGTCGCGGATTCGG
1 AATTAGCGTCGCGAATTCGG
* * *
61557 AATTAGCGTTGAGAATTTGG
1 AATTAGCGTCGCGAATTCGG
61577 AATTAGCGTCGCG-A-----
1 AATTAGCGTCGCGAATTCGG
* *
61591 AATTAGCGTTGCGAATTTGG
1 AATTAGCGTCGCGAATTCGG
* *
61611 AGTTAGCGTCGCGAATTCGA
1 AATTAGCGTCGCGAATTCGG
61631 AATTAGCGTCGCGAA
1 AATTAGCGTCGCGAA
61646 ATTAGCGTTG
Statistics
Matches: 71, Mismatches: 12, Indels: 12
0.75 0.13 0.13
Matches are distributed among these distances:
14 12 0.17
15 1 0.01
19 1 0.01
20 57 0.80
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (20 bp):
AATTAGCGTCGCGAATTCGG
Found at i:61592 original size:54 final size:54
Alignment explanation
Indices: 61508--61666 Score: 228
Period size: 54 Copynumber: 2.9 Consensus size: 54
61498 ATTTGAAATC
* * * *
61508 GCGTTGTGAATTCGGAATTAGCGTCACGAAATTAGCGTCGCGGATTCGGAATTA
1 GCGTTGAGAATTCGGAATTAGCGTCGCGAAATTAGCGTTGCGGATTTGGAATTA
* * *
61562 GCGTTGAGAATTTGGAATTAGCGTCGCGAAATTAGCGTTGCGAATTTGGAGTTA
1 GCGTTGAGAATTCGGAATTAGCGTCGCGAAATTAGCGTTGCGGATTTGGAATTA
* * *
61616 GCGTCGCGAATTCGAAATTAGCGTCGCGAAATTAGCGTTGCGGATTTGGAA
1 GCGTTGAGAATTCGGAATTAGCGTCGCGAAATTAGCGTTGCGGATTTGGAA
61667 AATCGTGTTG
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (54 bp):
GCGTTGAGAATTCGGAATTAGCGTCGCGAAATTAGCGTTGCGGATTTGGAATTA
Found at i:61595 original size:34 final size:34
Alignment explanation
Indices: 61557--61625 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
61547 GCGGATTCGG
61557 AATTAGCGTTGAGAATTTGGAATTAGCGTCGCGA
1 AATTAGCGTTGAGAATTTGGAATTAGCGTCGCGA
* *
61591 AATTAGCGTTGCGAATTTGGAGTTAGCGTCGCGA
1 AATTAGCGTTGAGAATTTGGAATTAGCGTCGCGA
61625 A
1 A
61626 TTCGAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (34 bp):
AATTAGCGTTGAGAATTTGGAATTAGCGTCGCGA
Found at i:61717 original size:20 final size:20
Alignment explanation
Indices: 61694--61744 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
61684 GAAATTCGAA
61694 TTGCGAATTTGGAAACT-GTG
1 TTGCGAATTTGG-AACTCGTG
* **
61714 TTGCGAAATTGGAGTTCGTG
1 TTGCGAATTTGGAACTCGTG
61734 TTGCGAATTTG
1 TTGCGAATTTG
61745 TTGGTTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.22, C:0.10, G:0.31, T:0.37
Consensus pattern (20 bp):
TTGCGAATTTGGAACTCGTG
Found at i:65128 original size:230 final size:227
Alignment explanation
Indices: 64726--65220 Score: 900
Period size: 230 Copynumber: 2.2 Consensus size: 227
64716 GTTATATTGT
* * *
64726 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAATATATTTATTATTA
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
* *
64791 TCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAA
66 TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAAAATTTTATAAAATATCAAAACAATCAAA
*
64856 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATATTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT--
64921 AAAAAATTGAAACATAAATTACATAACTTTAAAA
194 AAAAAATTGAAACATAAATTACATAACTTTAAAA
64955 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAACATATTTATTATT
65020 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAAAATTTTATAAAATATCAAAACAATCAA
65 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAAAATTTTATAAAATATCAAAACAATCAA
*
65085 ATAATATTTTGTGTAAATTAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
130 ATAATATTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTA
65150 AAAAATTGAAACATAAATTACATAACTTTAAAA
195 AAAAATTGAAACATAAATTACATAACTTTAAAA
65183 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTAT
65221 AAAAGTAGGT
Statistics
Matches: 258, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
228 72 0.28
229 44 0.17
230 142 0.55
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (227 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGAAAACATATTTATTATTA
TATTTGGTTAATATTGTTAAATTTAAATTCTAAATAAAATTTTATAAAATATCAAAACAATCAAA
TAATATTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:65522 original size:20 final size:19
Alignment explanation
Indices: 65499--65545 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
65489 CGATATACCA
65499 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
65519 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
65539 GGTAAAA
1 GGTAAAA
65546 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:65633 original size:181 final size:182
Alignment explanation
Indices: 65287--65759 Score: 680
Period size: 181 Copynumber: 2.6 Consensus size: 182
65277 GATCCAAATT
* * * *
65287 AAAAATGTGTCGATCCAAAACGATATAACAGGTAAAACTATGACAAAACCGGTATA-GAAATGAT
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTA-ACAAAATGAT
* * * * * * *
65351 AAAACCGATCAAGCGCTACCGGATACATTTAAAGTGTCGGTACTTTAATATAAAGATCGACACTT
65 AAAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAAGATCGACACTT
* *
65416 CGTGAATTTAAAAGAGAAGCAGTTTTAAATCCTATAAAGTGTCGATACTTTTA
130 CGTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
*
65469 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
* * *
65534 AAACCGGTAAAACGTTACCGGATATATTAAAAGTGTCGATACTTT-ATATAAGGATCGACACTTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAAGATCGACACTTC
** *
65598 GTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAATGTGTCGATACTTTAA
131 GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
* * *
65650 AAAAATATATCGATCCACAACGATATAACAGGTAAAAATATGATAAAACCGGTATCAAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
* * * *
65715 AAGCCGGTAAAATGATACCAGATATATTGAAAGTGTCGATACTTT
66 AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTT
65760 CGTAAGTACG
Statistics
Matches: 262, Mismatches: 28, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
181 166 0.63
182 96 0.37
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAACCGGTAACAAAATGATA
AAACCGGTAAAACGATACCGGATATATTAAAAGTGTCGATACTTTAATATAAAGATCGACACTTC
GTGAATTTAAAAGAGAAGCAGTTTTAAAGCCTATAAAGTGTCGATACTTTAA
Found at i:65703 original size:20 final size:19
Alignment explanation
Indices: 65680--65726 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
65670 CGATATAACA
65680 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
* *
65700 GGTATCAAAATGATAAAGCC
1 GGTA-AAAAATGATAAAACC
65720 GGTAAAA
1 GGTAAAA
65727 TGATACCAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:67969 original size:21 final size:21
Alignment explanation
Indices: 67945--67985 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
67935 AAGACAATCA
67945 AGAGTCGAAGACAAACTTGAT
1 AGAGTCGAAGACAAACTTGAT
*
67966 AGAGTCGAAGAGAAACTTGA
1 AGAGTCGAAGACAAACTTGA
67986 GAGGCATAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.44, C:0.12, G:0.27, T:0.17
Consensus pattern (21 bp):
AGAGTCGAAGACAAACTTGAT
Found at i:68064 original size:33 final size:33
Alignment explanation
Indices: 68022--68087 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
68012 AAATAGATGG
*
68022 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
68055 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
68088 TATTAAGATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:69904 original size:19 final size:19
Alignment explanation
Indices: 69880--69924 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
69870 AATGTAGGGT
69880 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
69899 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
69918 TAATTTT
1 TAATTTT
69925 TTATGTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:70394 original size:200 final size:200
Alignment explanation
Indices: 70051--72840 Score: 5156
Period size: 200 Copynumber: 13.9 Consensus size: 200
70041 ATGGGCAACA
*
70051 GGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
70116 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
70181 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
70246 AAACC
196 AAACC
70251 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
70316 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
70381 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
70446 AAACC
196 AAACC
*
70451 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCAGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
70516 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGATACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
*
70581 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCATAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
70646 AAACC
196 AAACC
70651 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
70716 AAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
70781 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
70846 AAACC
196 AAACC
70851 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCATATATAAAAAGTGTCGAT
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCC---------------C-A-
70916 CCCAAAAACATCGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGT
49 ---A-AAACATCGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGT
*
70981 ATACCTGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAT
110 ATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAT
71046 TTTTGGTCCAGAATGGTTGGAAAACC
175 TTTTGGTCCAGAATGGTTGGAAAACC
* *
71072 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGACGATCCCAAAAACATCGGCACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
71137 AAGTATAATGTGATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
71202 ATGTCTAAATAATGTGTCGACACTTTTTTAG-TTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
71266 AAA-C
196 AAACC
*
71270 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCAGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
71335 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGATACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
*
71400 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCATAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
71465 AAACC
196 AAACC
71470 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
71535 AAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
71600 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
71665 AAACC
196 AAACC
71670 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
71735 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCTGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
71800 ATGTCTAAATAATGTGTCGACAC-TTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
71864 AAACC
196 AAACC
*
71869 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGCACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
71934 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
71999 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
72064 AAACC
196 AAACC
*
72069 GGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
72134 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
* *
72199 ATGTCTAAATAATGTGTTGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAAAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
*
72264 AAATC
196 AAACC
72269 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
72334 AAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
72398 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
72463 AAACC
196 AAACC
*
72468 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGCACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
72533 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
72598 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
72663 AAACC
196 AAACC
*
72668 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGAGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
* *
72733 AAGTATAATGTAATATGTAATTTTTCAATCTAACCAGTTCAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
72798 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
72841 CTAATTTAAA
Statistics
Matches: 2523, Mismatches: 42, Indels: 50
0.96 0.02 0.02
Matches are distributed among these distances:
198 157 0.06
199 463 0.18
200 1703 0.67
201 1 0.00
205 1 0.00
206 1 0.00
215 1 0.00
216 1 0.00
220 1 0.00
221 194 0.08
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (200 bp):
GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
AAACC
Found at i:70791 original size:400 final size:400
Alignment explanation
Indices: 70051--72840 Score: 5156
Period size: 399 Copynumber: 6.9 Consensus size: 400
70041 ATGGGCAACA
*
70051 GGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
70116 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
70181 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
70246 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
70311 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
70376 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
70441 TTGGAAAACC
391 TTGGAAAACC
*
70451 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCAGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
70516 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGATACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
*
70581 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCATAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
70646 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
*
70711 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
70776 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
70841 TTGGAAAACC
391 TTGGAAAACC
70851 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCATATATAAAAAGTGTCGAT
1 GGGTG----C----A------A-CC----AT--AAAGTGTCGATCCATATATAAAAAGTGTCGAT
70916 CCCAAAAACATCGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGT
45 CCCAAAAACATCGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGT
*
70981 ATACCTGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAT
110 ATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATAT
71046 TTTTGGTCCAGAATGGTTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTG
175 TTTTGGTCCAGAATGGTTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTG
* * *
71111 ACGATCCCAAAAACATCGGCACCCAAAAGTATAATGTGATATGTAATTTTTCAATCTAACCGGTA
240 TCGATCCCAAAAACATCGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTA
71176 CAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAG-TTGTGTC
305 CAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTC
71240 GATATTTTTGGTCCAGAATGGTTGGAAAA-C
370 GATATTTTTGGTCCAGAATGGTTGGAAAACC
*
71270 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCAGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
71335 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGATACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
*
71400 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCATAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
71465 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
*
71530 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
71595 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
71660 TTGGAAAACC
391 TTGGAAAACC
71670 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
71735 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCTGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
71800 ATGTCTAAATAATGTGTCGACAC-TTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
*
71864 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGCA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
71929 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
71994 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
72059 TTGGAAAACC
391 TTGGAAAACC
*
72069 GGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
72134 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
* *
72199 ATGTCTAAATAATGTGTTGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAAAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
*
72264 AAATCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
72329 CCCAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
72393 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
72458 TTGGAAAACC
391 TTGGAAAACC
*
72468 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGCACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
72533 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
72598 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
*
72663 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGAGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
* *
72728 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCAGTTCAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
72793 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
72841 CTAATTTAAA
Statistics
Matches: 2324, Mismatches: 41, Indels: 50
0.96 0.02 0.02
Matches are distributed among these distances:
398 341 0.15
399 822 0.35
400 766 0.33
404 3 0.00
405 1 0.00
408 1 0.00
411 1 0.00
414 1 0.00
415 3 0.00
419 8 0.00
420 36 0.02
421 341 0.15
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (400 bp):
GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
TTGGAAAACC
Found at i:70888 original size:21 final size:21
Alignment explanation
Indices: 70863--70917 Score: 110
Period size: 21 Copynumber: 2.6 Consensus size: 21
70853 GTGCAACCAT
70863 AAAGTGTCGATCCATATATAA
1 AAAGTGTCGATCCATATATAA
70884 AAAGTGTCGATCCATATATAA
1 AAAGTGTCGATCCATATATAA
70905 AAAGTGTCGATCC
1 AAAGTGTCGATCC
70918 CAAAAACATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (21 bp):
AAAGTGTCGATCCATATATAA
Found at i:72165 original size:599 final size:600
Alignment explanation
Indices: 70051--72840 Score: 5156
Period size: 599 Copynumber: 4.6 Consensus size: 600
70041 ATGGGCAACA
*
70051 GGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
70116 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
70181 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
70246 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
70311 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
70376 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
70441 TTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
391 TTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
* *
70506 CAGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGATACAAGTATACCGGTTTT
456 CGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
70571 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAT
521 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
70636 AATGGTTGGAAAACC
586 AATGGTTGGAAAACC
70651 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
70716 AAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
70781 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
70846 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCATATATAAAAAGTG
196 AAACCGGGTG----C----A------A-CC----AT--AAAGTGTCGATCCATATATAAAAAGTG
70911 TCGATCCCAAAAACATCGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTA
240 TCGATCCCAAAAACATCGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTA
*
70976 CAAGTATACCTGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTC
305 CAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTC
71041 GATATTTTTGGTCCAGAATGGTTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAA
370 GATATTTTTGGTCCAGAATGGTTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAA
* * *
71106 AAGTGACGATCCCAAAAACATCGGCACCCAAAAGTATAATGTGATATGTAATTTTTCAATCTAAC
435 AAGTGTCGATCCCAAAAACATCGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAAC
71171 CGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAG-TT
500 CGGTACAAGTATACCGGTTTTATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTT
71235 GTGTCGATATTTTTGGTCCAGAATGGTTGGAAAA-C
565 GTGTCGATATTTTTGGTCCAGAATGGTTGGAAAACC
*
71270 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCAGAACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
*
71335 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGATACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
*
71400 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCATAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
71465 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
*
71530 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
71595 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
71660 TTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
391 TTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
*
71725 CGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCTGTTTT
456 CGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
71790 ATGAGAGAATATGTCTAAATAATGTGTCGACAC-TTTTTAGTTTGTGTCGATATTTTTGGTCCAG
521 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
71854 AATGGTTGGAAAACC
586 AATGGTTGGAAAACC
*
71869 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGCACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
71934 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
71999 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
*
72064 AAACCGGGTGCAACCATAAAGTGTCGAACCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
72129 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
* *
72194 AGAATATGTCTAAATAATGTGTTGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAAAATGG
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
*
72259 TTGGAAAATCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
391 TTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
72324 CGGAACCCAAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAAGTATACCGGTTTT
456 CGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
72388 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
521 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
72453 AATGGTTGGAAAACC
586 AATGGTTGGAAAACC
*
72468 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGCACCCAA
1 GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
72533 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
66 AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
72598 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
131 ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
*
72663 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGAGTCGATCCCAAAAACATCGGAA
196 AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
* *
72728 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCAGTTCAAGTATACCGGTTTTATGAG
261 CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
72793 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
326 AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATA
72841 CTAATTTAAA
Statistics
Matches: 2132, Mismatches: 34, Indels: 49
0.96 0.02 0.02
Matches are distributed among these distances:
597 7 0.00
598 437 0.20
599 891 0.42
600 205 0.10
604 3 0.00
605 1 0.00
608 1 0.00
611 1 0.00
614 1 0.00
615 3 0.00
619 204 0.10
620 35 0.02
621 343 0.16
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (600 bp):
GGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAACCCAA
AAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAGAAT
ATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGGTTGGA
AAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGGAA
CCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAG
AGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGG
TTGGAAAACCGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
CGGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTTAGTTTGTGTCGATATTTTTGGTCCAG
AATGGTTGGAAAACC
Found at i:74317 original size:6 final size:6
Alignment explanation
Indices: 74306--74357 Score: 59
Period size: 6 Copynumber: 8.7 Consensus size: 6
74296 CAAGCGGTCA
* * * * *
74306 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGATG ATGACG ATGAAG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
74354 ATGA
1 ATGA
74358 TGACGATGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.40, C:0.08, G:0.33, T:0.19
Consensus pattern (6 bp):
ATGAAG
Found at i:74328 original size:12 final size:12
Alignment explanation
Indices: 74306--74357 Score: 77
Period size: 12 Copynumber: 4.3 Consensus size: 12
74296 CAAGCGGTCA
*
74306 ATGAAGATGAAG
1 ATGACGATGAAG
*
74318 CTGACGATGAAG
1 ATGACGATGAAG
*
74330 ATGACGATGATG
1 ATGACGATGAAG
74342 ATGACGATGAAG
1 ATGACGATGAAG
74354 ATGA
1 ATGA
74358 TGACGATGAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.40, C:0.08, G:0.33, T:0.19
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:74350 original size:9 final size:9
Alignment explanation
Indices: 74329--74387 Score: 57
Period size: 9 Copynumber: 6.6 Consensus size: 9
74319 TGACGATGAA
74329 GATGACGAT
1 GATGACGAT
* *
74338 GATGATGAC
1 GATGACGAT
*
74347 GATGAAGAT
1 GATGACGAT
74356 GATGACGAT
1 GATGACGAT
* *
74365 GATGATGTT
1 GATGACGAT
74374 GATG-CTGAT
1 GATGAC-GAT
74383 GATGA
1 GATGA
74388 TGATCCAAAC
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.32, C:0.07, G:0.34, T:0.27
Consensus pattern (9 bp):
GATGACGAT
Found at i:74356 original size:15 final size:15
Alignment explanation
Indices: 74335--74390 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
74325 TGAAGATGAC
74335 GATGATGATGACGAT
1 GATGATGATGACGAT
*
74350 GAAGATGATGACGAT
1 GATGATGATGACGAT
* * *
74365 GATGATGTTGATGCT
1 GATGATGATGACGAT
74380 GATGATGATGA
1 GATGATGATGA
74391 TCCAAACAAG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 35 1.00
ACGTcount: A:0.32, C:0.05, G:0.34, T:0.29
Consensus pattern (15 bp):
GATGATGATGACGAT
Found at i:74358 original size:18 final size:18
Alignment explanation
Indices: 74306--74360 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
74296 CAAGCGGTCA
* *
74306 ATGAAGATGAAGCTGACG
1 ATGAAGATGAAGATGATG
*
74324 ATGAAGATGACGATGATG
1 ATGAAGATGAAGATGATG
*
74342 ATGACGATGAAGATGATG
1 ATGAAGATGAAGATGATG
74360 A
1 A
74361 CGATGATGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.40, C:0.07, G:0.33, T:0.20
Consensus pattern (18 bp):
ATGAAGATGAAGATGATG
Found at i:74365 original size:24 final size:24
Alignment explanation
Indices: 74319--74369 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
74309 AAGATGAAGC
*
74319 TGACGATGAAGATGACGATGATGA
1 TGACGATGAAGATGACGACGATGA
*
74343 TGACGATGAAGATGATGACGATGA
1 TGACGATGAAGATGACGACGATGA
74367 TGA
1 TGA
74370 TGTTGATGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.08, G:0.33, T:0.22
Consensus pattern (24 bp):
TGACGATGAAGATGACGACGATGA
Found at i:74371 original size:6 final size:6
Alignment explanation
Indices: 74323--74391 Score: 75
Period size: 6 Copynumber: 11.5 Consensus size: 6
74313 TGAAGCTGAC
* * * * *
74323 GATGAA GATGAC GATGAT GATGAC GATGAA GATGAT GACGAT GATGAT
1 GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT GATGAT
* *
74371 GTTGAT GCTGAT GATGAT GAT
1 GATGAT GATGAT GATGAT GAT
74392 CCAAACAAGT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.33, C:0.06, G:0.33, T:0.28
Consensus pattern (6 bp):
GATGAT
Found at i:75864 original size:183 final size:183
Alignment explanation
Indices: 75556--76497 Score: 1794
Period size: 183 Copynumber: 5.1 Consensus size: 183
75546 AACAATCTAT
75556 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
1 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
*
75621 AAAGTGTCGACATTTACATATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
66 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
* *
75686 CGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACCTATATCGACA
131 CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAACCTATATCGACA
75739 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
1 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
75804 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
66 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
*
75869 CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAATCTATATCGACA
131 CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAACCTATATCGACA
75922 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
1 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
75987 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
66 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
*
76052 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACA
131 CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAACCTATATCGACA
76105 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
1 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
76170 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
66 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
*
76235 CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAATCTATATCGACA
131 CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAACCTATATCGACA
* *
76288 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAATGGAAGATGAATGTGTCGATACTTTGTCAA
1 CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
76353 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
66 AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
76418 CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAACCTATATCGACA
131 CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAACCTATATCGACA
*
76471 CTTTCTAATATTGTGTCGGTAATTTTA
1 CTTTTTAATATTGTGTCGGT-ATTTTA
76498 CGTAACGCGG
Statistics
Matches: 746, Mismatches: 12, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
183 740 0.99
184 6 0.01
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (183 bp):
CTTTTTAATATTGTGTCGGTATTTTATGTCCAGAACGGAAGATGAATGTGTCGATACCTTGTCAA
AAAGTGTCGACATTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
CGGTATAAATATACCGGTTTTATGACCGAATAGGTCTACAACCTATATCGACA
Found at i:78974 original size:21 final size:21
Alignment explanation
Indices: 78948--78995 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
78938 GGTATGTATC
*
78948 CTTTTTATAAAAGTGTCTATA
1 CTTTTTATAAAAGTGTCCATA
78969 CTTTTTATAAAAGTGTCCATA
1 CTTTTTATAAAAGTGTCCATA
78990 CTTTTT
1 CTTTTT
78996 TCACTGTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.50
Consensus pattern (21 bp):
CTTTTTATAAAAGTGTCCATA
Found at i:79240 original size:23 final size:23
Alignment explanation
Indices: 79193--79242 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
79183 ATAGGTAAAA
* **
79193 ATATGATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCACTT
*
79216 ATATAATGTAATAGGTAGTACTT
1 ATATAATGTAATAGGTAGCACTT
79239 ATAT
1 ATAT
79243 TGTAAAGTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCACTT
Found at i:79512 original size:23 final size:23
Alignment explanation
Indices: 79481--79530 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
79471 ATAGGTAAAA
* *
79481 ATATGATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
79504 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
79527 ATAT
1 ATAT
79531 TGTAAAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:79530 original size:288 final size:289
Alignment explanation
Indices: 78957--80218 Score: 2384
Period size: 289 Copynumber: 4.4 Consensus size: 289
78947 CCTTTTTATA
* *
78957 AAAGTGTCTATACTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
1 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
*
79022 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATTAAATTAATATTGTATGTGGAAA
66 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATTAAATTAATATTGTAGGTGGAAA
79087 ACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATCCT
131 ACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATCCT
79152 TTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTTA
196 TTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTTA
*
79217 TATAATGTAATAGGTAGTACTTATATTGT
261 TATAATGTAATAGGTAGTGCTTATATTGT
*
79246 AAAGTATCTATCCTTTTTATAAAAGTTTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
1 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
79311 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATTAAATTAATATTGTAGGTGGAAA
66 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATTAAATTAATATTGTAGGTGGAAA
79376 ACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATCCT
131 ACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATCCT
*
79440 TTTTATAAAAAGTATGGACATTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTTA
196 TTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTTA
79505 TATAATGTAATAGGTAGTGCTTATATTGT
261 TATAATGTAATAGGTAGTGCTTATATTGT
79534 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
1 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
79599 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATTAAATTAATATTGTAGGTGGAAA
66 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATTAAATTAATATTGTAGGTGGAAA
79664 ACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATCCT
131 ACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATCCT
*
79729 TTTTATAAAAAGTATGGACACTTTTAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTTA
196 TTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTTA
79794 TATAATGTAATAGGTAGTGCTTATATTGT
261 TATAATGTAATAGGTAGTGCTTATATTGT
*
79823 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAATG
1 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
*
79888 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGAAATTATTAAATTAATATTGTAGGTGGAAA
66 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATTAAATTAATATTGTAGGTGGAAA
*
79953 ACATGAAACACTATT-AAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATCTT
131 ACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATC-C
80017 TTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTT
195 TTTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTT
80082 ATATAATGTAATAGGTAGTGCTTATATTGT
260 ATATAATGTAATAGGTAGTGCTTATATTGT
*
80112 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAATATTAATTTAAGG
1 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
* *
80177 TTATCTTTTGAGTGAGTTTTCAGATATTAATTTAGAAATTAT
66 TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTAT
80219 GGGCGTCTAA
Statistics
Matches: 955, Mismatches: 16, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
288 332 0.35
289 623 0.65
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (289 bp):
AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGG
TTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATTAAATTAATATTGTAGGTGGAAA
ACATGAAACACTATTAAAAAAAATTGAAACATAAATTACATAACTTTAAACAAAGTATCGATCCT
TTTTATAAAAAGTATGGACACTTTCAATATAATAGGTAAAAATATGATGTAATAGGTAGCGTTTA
TATAATGTAATAGGTAGTGCTTATATTGT
Found at i:79801 original size:23 final size:23
Alignment explanation
Indices: 79770--79819 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
79760 ATAGGTAAAA
* *
79770 ATATGATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
79793 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
79816 ATAT
1 ATAT
79820 TGTAAAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:80090 original size:23 final size:23
Alignment explanation
Indices: 80059--80108 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
80049 ATAGGTAAAA
* *
80059 ATATGATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
80082 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
80105 ATAT
1 ATAT
80109 TGTAAAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:80613 original size:23 final size:23
Alignment explanation
Indices: 80584--80631 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
80574 AAATAGGTAA
*
80584 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTAGTACATT
* *
80607 ATATAAGCTCTACCTAGTATATT
1 ATATAAGCGCTACCTAGTACATT
80630 AT
1 AT
80632 TGTACTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (23 bp):
ATATAAGCGCTACCTAGTACATT
Found at i:81156 original size:22 final size:22
Alignment explanation
Indices: 81112--81156 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
81102 CATGTTTTTA
* *
81112 TTTATAAATTTTCTTATTCATT
1 TTTATAAATATACTTATTCATT
81134 TTTATAAATATACATTATT-ATT
1 TTTATAAATATAC-TTATTCATT
81156 T
1 T
81157 ATTTTAAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTATAAATATACTTATTCATT
Found at i:81612 original size:60 final size:59
Alignment explanation
Indices: 81514--81647 Score: 155
Period size: 60 Copynumber: 2.2 Consensus size: 59
81504 GAAATTGGAT
* ** *
81514 TGTTCAAAAGTTCAGGGACCAATTTAGAATGAATGTCATTGTTTGGGGATGAAAA-TAAAA
1 TGTTCAAAAGTT-AAGGACCAATTTAGAATGAATGTCATAATTTAGGGAT-AAAATTAAAA
*
81574 TGTTCAAAAGATTAAGGACTAATTTAGAATG-ATAGTCATAATTTAGGGATAAAATTAAAA
1 TGTTCAAAAG-TTAAGGACCAATTTAGAATGAAT-GTCATAATTTAGGGATAAAATTAAAA
* *
81634 TATTTAAAAGTTAA
1 TGTTCAAAAGTTAA
81648 ACTATCCATT
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 10 0.16
60 52 0.81
61 2 0.03
ACGTcount: A:0.43, C:0.06, G:0.19, T:0.32
Consensus pattern (59 bp):
TGTTCAAAAGTTAAGGACCAATTTAGAATGAATGTCATAATTTAGGGATAAAATTAAAA
Found at i:81801 original size:2 final size:2
Alignment explanation
Indices: 81794--81862 Score: 138
Period size: 2 Copynumber: 34.5 Consensus size: 2
81784 ATTAATAATC
81794 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81836 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
81863 TTTTAGTTTT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:82921 original size:21 final size:21
Alignment explanation
Indices: 82598--82914 Score: 398
Period size: 21 Copynumber: 15.2 Consensus size: 21
82588 CATATTCGCA
82598 TTGCGATAG--TCCAAGTTCG
1 TTGCGATAGTCTCCAAGTTCG
*
82617 CATTGCGATAG--TCCAAATTCG
1 --TTGCGATAGTCTCCAAGTTCG
82638 CATTGCGATAG--TCCAAGTTCG
1 --TTGCGATAGTCTCCAAGTTCG
* *
82659 CATTGCGAT--TTTCCAAATTCG
1 --TTGCGATAGTCTCCAAGTTCG
82680 TTGCGATAGTCTCCAAGTTCG
1 TTGCGATAGTCTCCAAGTTCG
* *
82701 TTGCGATAGTCTGCAAGTTTG
1 TTGCGATAGTCTCCAAGTTCG
*
82722 TTGCGATAGTCTCCAAGTTAG
1 TTGCGATAGTCTCCAAGTTCG
*
82743 TTGCGATAGTCTCCAAGTTTG
1 TTGCGATAGTCTCCAAGTTCG
*
82764 TTGCGATAGTCTCCAAATTCG
1 TTGCGATAGTCTCCAAGTTCG
* *
82785 TTGCGATAGTCTCTAAATTCG
1 TTGCGATAGTCTCCAAGTTCG
82806 TTGCGATAGTCTCCAAGTTCG
1 TTGCGATAGTCTCCAAGTTCG
*
82827 TTGTGATAGTCTCCAAGTTCG
1 TTGCGATAGTCTCCAAGTTCG
* *
82848 TTGCGATAGTCTCCAAATTCA
1 TTGCGATAGTCTCCAAGTTCG
*
82869 TTGCGATAGTCTTCAAGTTCG
1 TTGCGATAGTCTCCAAGTTCG
82890 TTGCGATAGTCTCCAAGTTCG
1 TTGCGATAGTCTCCAAGTTCG
82911 TTGC
1 TTGC
82915 AGTAGTCCAA
Statistics
Matches: 269, Mismatches: 23, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
19 7 0.03
21 262 0.97
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (21 bp):
TTGCGATAGTCTCCAAGTTCG
Found at i:84102 original size:21 final size:20
Alignment explanation
Indices: 84069--84161 Score: 91
Period size: 21 Copynumber: 4.6 Consensus size: 20
84059 TTTAGAGACT
84069 ATCGCAA-CGAACTTGGAAA
1 ATCGCAATCGAACTTGGAAA
**
84088 ATCGCAATGCGAACTTGGACT
1 ATCGCAAT-CGAACTTGGAAA
* *
84109 ATCGCAA-CGAATTTGAAAA
1 ATCGCAATCGAACTTGGAAA
**
84128 ATCGCAATACGAACTTGGATT
1 ATCGCAAT-CGAACTTGGAAA
84149 ATCGCAATGCGAA
1 ATCGCAAT-CGAA
84162 TATGTAAATC
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
19 22 0.37
21 37 0.63
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (20 bp):
ATCGCAATCGAACTTGGAAA
Found at i:84110 original size:40 final size:40
Alignment explanation
Indices: 84065--84155 Score: 146
Period size: 40 Copynumber: 2.3 Consensus size: 40
84055 CGATTTTAGA
* *
84065 GACTATCGCAACGAACTTGGAAAATCGCAATGCGAACTTG
1 GACTATCGCAACGAACTTGAAAAATCGCAATACGAACTTG
*
84105 GACTATCGCAACGAATTTGAAAAATCGCAATACGAACTTG
1 GACTATCGCAACGAACTTGAAAAATCGCAATACGAACTTG
*
84145 GATTATCGCAA
1 GACTATCGCAA
84156 TGCGAATATG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (40 bp):
GACTATCGCAACGAACTTGAAAAATCGCAATACGAACTTG
Found at i:97275 original size:12 final size:13
Alignment explanation
Indices: 97251--97291 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
97241 ACAGTCAACA
97251 GTCAACGGGTCGG
1 GTCAACGGGTCGG
*
97264 GTCAA-TGGTCGG
1 GTCAACGGGTCGG
*
97276 GTAAACGGGTCGG
1 GTCAACGGGTCGG
97289 GTC
1 GTC
97292 GGGTAAACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.17, C:0.20, G:0.44, T:0.20
Consensus pattern (13 bp):
GTCAACGGGTCGG
Found at i:97293 original size:18 final size:18
Alignment explanation
Indices: 97270--97305 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
97260 TCGGGTCAAT
97270 GGTCGGGTAAACGGGTCG
1 GGTCGGGTAAACGGGTCG
97288 GGTCGGGTAAACGGGTCG
1 GGTCGGGTAAACGGGTCG
97306 TGACCGGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (18 bp):
GGTCGGGTAAACGGGTCG
Found at i:97328 original size:10 final size:10
Alignment explanation
Indices: 97308--97362 Score: 78
Period size: 10 Copynumber: 5.6 Consensus size: 10
97298 ACGGGTCGTG
97308 ACCGGTC-AA
1 ACCGGTCAAA
97317 ACCGGTCAAA
1 ACCGGTCAAA
97327 ACCGGTTCAAA
1 ACCGG-TCAAA
*
97338 ACCGGT-TAA
1 ACCGGTCAAA
97347 ACCGGTCAAA
1 ACCGGTCAAA
97357 ACCGGT
1 ACCGGT
97363 TTCCAGCGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
9 15 0.37
10 16 0.39
11 10 0.24
ACGTcount: A:0.35, C:0.29, G:0.22, T:0.15
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:97363 original size:19 final size:19
Alignment explanation
Indices: 97308--97363 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
97298 ACGGGTCGTG
*
97308 ACCGGTC-AAACCGGTCAAA
1 ACCGGTCAAAACCGGT-TAA
97327 ACCGGTTCAAAACCGGTTAA
1 ACCGG-TCAAAACCGGTTAA
97347 ACCGGTCAAAACCGGTT
1 ACCGGTCAAAACCGGTT
97364 TCCAGCGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 17 0.50
20 9 0.26
21 8 0.24
ACGTcount: A:0.34, C:0.29, G:0.21, T:0.16
Consensus pattern (19 bp):
ACCGGTCAAAACCGGTTAA
Found at i:104553 original size:12 final size:13
Alignment explanation
Indices: 104529--104569 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
104519 ACGGTCAACA
104529 GTCAACGGGTCGG
1 GTCAACGGGTCGG
*
104542 GTCAA-TGGTCGG
1 GTCAACGGGTCGG
*
104554 GTAAACGGGTCGG
1 GTCAACGGGTCGG
104567 GTC
1 GTC
104570 GGGTAAACGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 10 0.43
13 13 0.57
ACGTcount: A:0.17, C:0.20, G:0.44, T:0.20
Consensus pattern (13 bp):
GTCAACGGGTCGG
Found at i:104571 original size:18 final size:18
Alignment explanation
Indices: 104548--104583 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
104538 TCGGGTCAAT
104548 GGTCGGGTAAACGGGTCG
1 GGTCGGGTAAACGGGTCG
104566 GGTCGGGTAAACGGGTCG
1 GGTCGGGTAAACGGGTCG
104584 TGACCGGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (18 bp):
GGTCGGGTAAACGGGTCG
Found at i:104606 original size:10 final size:10
Alignment explanation
Indices: 104586--104640 Score: 78
Period size: 10 Copynumber: 5.6 Consensus size: 10
104576 ACGGGTCGTG
104586 ACCGGTC-AA
1 ACCGGTCAAA
104595 ACCGGTCAAA
1 ACCGGTCAAA
104605 ACCGGTTCAAA
1 ACCGG-TCAAA
*
104616 ACCGGT-TAA
1 ACCGGTCAAA
104625 ACCGGTCAAA
1 ACCGGTCAAA
104635 ACCGGT
1 ACCGGT
104641 TTCCAGCGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
9 15 0.37
10 16 0.39
11 10 0.24
ACGTcount: A:0.35, C:0.29, G:0.22, T:0.15
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:104641 original size:19 final size:19
Alignment explanation
Indices: 104586--104641 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
104576 ACGGGTCGTG
*
104586 ACCGGTC-AAACCGGTCAAA
1 ACCGGTCAAAACCGGT-TAA
104605 ACCGGTTCAAAACCGGTTAA
1 ACCGG-TCAAAACCGGTTAA
104625 ACCGGTCAAAACCGGTT
1 ACCGGTCAAAACCGGTT
104642 TCCAGCGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
19 17 0.50
20 9 0.26
21 8 0.24
ACGTcount: A:0.34, C:0.29, G:0.21, T:0.16
Consensus pattern (19 bp):
ACCGGTCAAAACCGGTTAA
Found at i:111760 original size:29 final size:29
Alignment explanation
Indices: 111670--111794 Score: 101
Period size: 29 Copynumber: 4.3 Consensus size: 29
111660 CATTTTACAC
111670 AAATAGCA-CCATTTTCGAATTAATTCCCA
1 AAATAGCACCCA-TTTCGAATTAATTCCCA
* **** * * *
111699 AAATATCATTTTTTTCGAA-AAATTACTA
1 AAATAGCACCCATTTCGAATTAATTCCCA
111727 AAATAGCACCCATTTCGAATTAATTCCCA
1 AAATAGCACCCATTTCGAATTAATTCCCA
* * ***
111756 GAATAGCACCAAAACCGAATTAATTCCCA
1 AAATAGCACCCATTTCGAATTAATTCCCA
*
111785 GAATAGCACC
1 AAATAGCACC
111795 GATCAACGGT
Statistics
Matches: 74, Mismatches: 20, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
28 20 0.27
29 54 0.73
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (29 bp):
AAATAGCACCCATTTCGAATTAATTCCCA
Found at i:111838 original size:18 final size:18
Alignment explanation
Indices: 111815--111852 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
111805 CAACGGTCAA
*
111815 CGGGTCGGGTAAACTGGT
1 CGGGTCGGGTAAACGGGT
111833 CGGGTCGGGTAAACGGGT
1 CGGGTCGGGTAAACGGGT
111851 CG
1 CG
111853 TGACCGGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.16, C:0.18, G:0.47, T:0.18
Consensus pattern (18 bp):
CGGGTCGGGTAAACGGGT
Found at i:111877 original size:10 final size:10
Alignment explanation
Indices: 111862--111909 Score: 62
Period size: 10 Copynumber: 4.8 Consensus size: 10
111852 GTGACCGGTT
111862 AAACCGGTCA
1 AAACCGGTCA
111872 AAACCGGTTCA
1 AAACCGG-TCA
* *
111883 AAACCGAT-T
1 AAACCGGTCA
111892 AAACCGGTCA
1 AAACCGGTCA
111902 AAACCGGT
1 AAACCGGT
111910 TTCCAGCGTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 7 0.22
10 16 0.50
11 9 0.28
ACGTcount: A:0.40, C:0.27, G:0.19, T:0.15
Consensus pattern (10 bp):
AAACCGGTCA
Found at i:120344 original size:16 final size:15
Alignment explanation
Indices: 120319--120348 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
120309 ATTTTCAGCT
120319 TCTTATTTTGACTTA
1 TCTTATTTTGACTTA
120334 TCTTCATTTTGACTT
1 TCTT-ATTTTGACTT
120349 GAAGTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.17, C:0.17, G:0.07, T:0.60
Consensus pattern (15 bp):
TCTTATTTTGACTTA
Found at i:121158 original size:16 final size:16
Alignment explanation
Indices: 121137--121171 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
121127 TATTGCTCGA
*
121137 CTCGTTGTTCATTAAG
1 CTCGTTGCTCATTAAG
121153 CTCGTTGCTCATTAAG
1 CTCGTTGCTCATTAAG
121169 CTC
1 CTC
121172 ACTAAATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.26, G:0.17, T:0.40
Consensus pattern (16 bp):
CTCGTTGCTCATTAAG
Found at i:121778 original size:26 final size:26
Alignment explanation
Indices: 121748--121798 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
121738 ATGGTGTAGC
121748 TCATTACATATTATCTTATTAATTAT
1 TCATTACATATTATCTTATTAATTAT
* * *
121774 TCATTAGATGTTATCTTTTTAATTA
1 TCATTACATATTATCTTATTAATTA
121799 ATCTTGAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.55
Consensus pattern (26 bp):
TCATTACATATTATCTTATTAATTAT
Found at i:126653 original size:15 final size:15
Alignment explanation
Indices: 126633--126741 Score: 200
Period size: 15 Copynumber: 7.3 Consensus size: 15
126623 AACTTAGAAA
126633 CACATCTGATAACTG
1 CACATCTGATAACTG
126648 CACATCTGATAACTG
1 CACATCTGATAACTG
126663 CACATCTGATAACTG
1 CACATCTGATAACTG
*
126678 CACATCGGATAACTG
1 CACATCTGATAACTG
126693 CACATCTGATAACTG
1 CACATCTGATAACTG
*
126708 CACATCGGATAACTG
1 CACATCTGATAACTG
126723 CACATCTGATAACTG
1 CACATCTGATAACTG
126738 CACA
1 CACA
126742 AATAAATTAT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 90 1.00
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.24
Consensus pattern (15 bp):
CACATCTGATAACTG
Found at i:134860 original size:21 final size:21
Alignment explanation
Indices: 134831--134870 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
134821 ATGGAGGCAT
*
134831 TCCCGAGTTACATTTGTCACA
1 TCCCAAGTTACATTTGTCACA
134852 TCCCAAGTTACATTTGTCA
1 TCCCAAGTTACATTTGTCA
134871 AGATGTAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (21 bp):
TCCCAAGTTACATTTGTCACA
Found at i:139653 original size:3 final size:3
Alignment explanation
Indices: 139645--139729 Score: 170
Period size: 3 Copynumber: 28.3 Consensus size: 3
139635 TCAATTAGTT
139645 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
139693 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
139730 ACCTTATCTC
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 82 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:146686 original size:16 final size:16
Alignment explanation
Indices: 146661--146741 Score: 135
Period size: 16 Copynumber: 5.1 Consensus size: 16
146651 GGTATTACCC
146661 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
*
146677 GACTTGTTTTCAACCT
1 GACCTGTTTTCAACCT
* *
146693 GACTTGTTTTTAACCT
1 GACCTGTTTTCAACCT
146709 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
146725 GACCTGTTTTCAACCT
1 GACCTGTTTTCAACCT
146741 G
1 G
146742 GACTGTAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 61 1.00
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.41
Consensus pattern (16 bp):
GACCTGTTTTCAACCT
Found at i:147038 original size:14 final size:14
Alignment explanation
Indices: 147016--147062 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
147006 TGCAAAGGAA
*
147016 AATTAATATAGTTT
1 AATTTATATAGTTT
147030 AATTTATATA----
1 AATTTATATAGTTT
147040 AA-TTATATAGTTT
1 AATTTATATAGTTT
147053 AATTTATATA
1 AATTTATATA
147063 ATGACAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 7 0.26
10 2 0.07
13 2 0.07
14 16 0.59
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (14 bp):
AATTTATATAGTTT
Found at i:147049 original size:23 final size:24
Alignment explanation
Indices: 147015--147063 Score: 91
Period size: 23 Copynumber: 2.1 Consensus size: 24
147005 ATGCAAAGGA
147015 AAATTAATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
147039 AAATT-ATATAGTTTAATTTATAT
1 AAATTAATATAGTTTAATTTATAT
147062 AA
1 AA
147064 TGACAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (24 bp):
AAATTAATATAGTTTAATTTATAT
Found at i:147297 original size:41 final size:40
Alignment explanation
Indices: 147221--147297 Score: 102
Period size: 41 Copynumber: 1.9 Consensus size: 40
147211 TGCTAGTCCA
* *
147221 TTTAAATTAGGATTTATGGTTTAGTGTTTATGGTTTAAAG
1 TTTAAATTAGGATTTATGATTTAGTGTTTAGGGTTTAAAG
*
147261 TTTAGAATTAGGGTTTATGATTTAG-GATTTAGGGTTT
1 TTTA-AATTAGGATTTATGATTTAGTG-TTTAGGGTTT
147298 CTATAAACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
40 5 0.16
41 27 0.84
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (40 bp):
TTTAAATTAGGATTTATGATTTAGTGTTTAGGGTTTAAAG
Found at i:147396 original size:19 final size:20
Alignment explanation
Indices: 147367--147438 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 20
147357 ATATGTAATT
*
147367 TACTTTATATAGTTTATATA
1 TACTATATATAGTTTATATA
147387 TA-TATATATAGTTTATATA
1 TACTATATATAGTTTATATA
* * *
147406 TACTATACATGGTTTATACA
1 TACTATATATAGTTTATATA
147426 TACATATTATATA
1 TAC-TA-TATATA
147439 AAATTATTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
19 18 0.42
20 19 0.44
21 2 0.05
22 4 0.09
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.49
Consensus pattern (20 bp):
TACTATATATAGTTTATATA
Found at i:148453 original size:47 final size:47
Alignment explanation
Indices: 148399--148499 Score: 193
Period size: 47 Copynumber: 2.1 Consensus size: 47
148389 CATTGTTGAG
148399 AAGCCATATAAGACAATCGTGTCCTGCGCCATATAACCATCACCACA
1 AAGCCATATAAGACAATCGTGTCCTGCGCCATATAACCATCACCACA
*
148446 AAGCCATATAAGACAATCGTTTCCTGCGCCATATAACCATCACCACA
1 AAGCCATATAAGACAATCGTGTCCTGCGCCATATAACCATCACCACA
148493 AAGCCAT
1 AAGCCAT
148500 GAACATGCTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 53 1.00
ACGTcount: A:0.37, C:0.32, G:0.12, T:0.20
Consensus pattern (47 bp):
AAGCCATATAAGACAATCGTGTCCTGCGCCATATAACCATCACCACA
Found at i:149805 original size:20 final size:20
Alignment explanation
Indices: 149777--149818 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
149767 TATTTAATAA
*
149777 TTATCTTTAGGAATTATCTT
1 TTATCTTTAGGAATTATATT
*
149797 TTATTTTTAGGAATTATATT
1 TTATCTTTAGGAATTATATT
149817 TT
1 TT
149819 CCTTGTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.05, G:0.10, T:0.60
Consensus pattern (20 bp):
TTATCTTTAGGAATTATATT
Found at i:149984 original size:26 final size:27
Alignment explanation
Indices: 149934--149984 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
149924 TAAAGTTATA
*
149934 TATTTTCTTTTCAAGTTTTAATTTTTT
1 TATTTTATTTTCAAGTTTTAATTTTTT
149961 TATTTTATTTT-AAGTTTT-ATTTTT
1 TATTTTATTTTCAAGTTTTAATTTTT
149985 AAACATGCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 6 0.26
26 7 0.30
27 10 0.43
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.73
Consensus pattern (27 bp):
TATTTTATTTTCAAGTTTTAATTTTTT
Found at i:154321 original size:30 final size:30
Alignment explanation
Indices: 154286--154353 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
154276 GTAATTCAAG
* * *
154286 TTTTAAAAATTACAAAATTGTCATTAAACT
1 TTTTAAAAATTACAAAATAGTCACTAAACA
*
154316 TTTTAATAATTACAAAATAGTCACTAAACA
1 TTTTAAAAATTACAAAATAGTCACTAAACA
*
154346 TTATAAAA
1 TTTTAAAA
154354 CCATAGCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.37
Consensus pattern (30 bp):
TTTTAAAAATTACAAAATAGTCACTAAACA
Found at i:156393 original size:16 final size:16
Alignment explanation
Indices: 156374--156408 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
156364 TCCATAATTT
156374 TAAAAATTTATAATGA
1 TAAAAATTTATAATGA
*
156390 TAAAAGTTTATAATGA
1 TAAAAATTTATAATGA
156406 TAA
1 TAA
156409 GATTCTCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (16 bp):
TAAAAATTTATAATGA
Found at i:156560 original size:17 final size:17
Alignment explanation
Indices: 156538--156570 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
156528 TTAGAAAAAA
156538 GTTTTGTTATAAATTTT
1 GTTTTGTTATAAATTTT
156555 GTTTTGTTATAAATTT
1 GTTTTGTTATAAATTT
156571 AGAATATGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (17 bp):
GTTTTGTTATAAATTTT
Found at i:156913 original size:21 final size:23
Alignment explanation
Indices: 156887--156938 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
156877 GGTAACTGGT
*
156887 ATAATTTACCTTT-TATT-TTAA
1 ATAATTTACCTTTAAATTATTAA
*
156908 ATAATTTATCTTTAAATTATTAA
1 ATAATTTACCTTTAAATTATTAA
*
156931 CTAATTTA
1 ATAATTTA
156939 TAATTATACG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 12 0.46
22 3 0.12
23 11 0.42
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (23 bp):
ATAATTTACCTTTAAATTATTAA
Found at i:160694 original size:30 final size:30
Alignment explanation
Indices: 160660--160729 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
160650 TTTGTCTCTG
*
160660 TTCGCTTTTGTTGTCTTTGTAGGCTTGATT
1 TTCGCTTTTGTTGTCTTTGTAGGCCTGATT
160690 TTCGCTTTTGTTGTCTTTGTAGGCCTGATT
1 TTCGCTTTTGTTGTCTTTGTAGGCCTGATT
160720 TTCGCTTTTG
1 TTCGCTTTTG
160730 ATATGTCTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.06, C:0.16, G:0.23, T:0.56
Consensus pattern (30 bp):
TTCGCTTTTGTTGTCTTTGTAGGCCTGATT
Found at i:162318 original size:195 final size:195
Alignment explanation
Indices: 161924--162331 Score: 532
Period size: 195 Copynumber: 2.1 Consensus size: 195
161914 ACAGCTAGTC
* * * * * * * *
161924 TAGTGAGATGAGGCACTATATTCGTTCAGCAAAGTCAGAGGTTCAAATCCTGATATTTGTGTATA
1 TAGTGGGATGAGACACTAGATTCCTTAAGCAAAGTCAGAGGTTCAAATCATGACATTTGCGTATA
* * * * *
161989 GAACAAATTGAGTTTGGATGGTAGTCCTCATAATGGGTTTCTATAAAACTCGATATGGACTAGTC
66 GAACAAATTGAGTTGGGAGGGTAGTCCCCATAATGAGTTTCTATAAAACTCAATATGGACTAGTC
* * *
162054 GATTAATAAATCCGATTCTAATGATTAATTTAAAAAATCAAACAAATACCAACAATCAGTTGATT
131 GATCAATAAATCCGATACTAATGATTAATTTAAAAAATCAAACAAATACCAACAATCAATTGATT
* * *
162119 TAGTGGGATGAGACACTAGATTCCTTAAG-AAATGTCAGGGGTTTAAATCATGACGTTTGCGTAT
1 TAGTGGGATGAGACACTAGATTCCTTAAGCAAA-GTCAGAGGTTCAAATCATGACATTTGCGTAT
* * *
162183 AGAACAAATTGGGTTGGGAGGGTCGTCCCCATAATGAGTTTCTATAAAACTCAATCTGGACTAGT
65 AGAACAAATTGAGTTGGGAGGGTAGTCCCCATAATGAGTTTCTATAAAACTCAATATGGACTAGT
* * * * *
162248 CGATCAATAAATCTGATACTAATGATTGA-TTAAAAAATCAAAACTAATACCAATAATCAATTGG
130 CGATCAATAAATCCGATACTAATGATTAATTTAAAAAATC-AAACAAATACCAACAATCAATTGA
162312 TT
194 TT
*
162314 TAGTGGAATGAGACACTA
1 TAGTGGGATGAGACACTA
162332 TTAGGCCATC
Statistics
Matches: 183, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
194 13 0.07
195 170 0.93
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (195 bp):
TAGTGGGATGAGACACTAGATTCCTTAAGCAAAGTCAGAGGTTCAAATCATGACATTTGCGTATA
GAACAAATTGAGTTGGGAGGGTAGTCCCCATAATGAGTTTCTATAAAACTCAATATGGACTAGTC
GATCAATAAATCCGATACTAATGATTAATTTAAAAAATCAAACAAATACCAACAATCAATTGATT
Found at i:162529 original size:15 final size:17
Alignment explanation
Indices: 162498--162529 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
162488 ATGTATTTGT
162498 ATCTATCTTGTAATTTA
1 ATCTATCTTGTAATTTA
162515 ATCTA-CTTG-AATTTA
1 ATCTATCTTGTAATTTA
162530 TTATATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 4 0.27
17 5 0.33
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.50
Consensus pattern (17 bp):
ATCTATCTTGTAATTTA
Done.