genome.fa.s933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000933.1 Hibiscus syriacus cultivar Beakdansim tig00001860_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84456

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4431--4537	27	4.0	26	77	8	90	15	35	16	31	1.91
9301--9911	308	2.0	305	93	2	1041	38	16	14	30	1.88
9937--9979	15	2.8	16	85	7	61	67	0	4	27	1.10
10036--10082	24	2.0	23	83	4	58	61	12	4	21	1.48
12569--12655	31	2.8	31	85	1	113	22	20	22	33	1.97
14002--14055	3	18.7	3	88	7	85	64	0	0	35	0.94
15047--15109	14	4.5	14	78	5	56	47	30	0	22	1.51
15057--15109	14	3.7	14	77	5	61	50	28	0	20	1.48
15070--15122	7	7.4	7	80	4	52	49	32	0	18	1.48
15057--15111	22	2.5	22	88	2	76	49	30	0	20	1.49
16118--16174	27	2.1	27	86	0	78	36	15	35	12	1.85
16273--16312	19	2.1	19	85	4	53	50	2	0	47	1.14
18682--18719	18	2.1	18	100	0	76	26	28	26	18	1.98
30158--30356	36	5.5	36	85	1	238	36	23	19	20	1.95
30728--31420	51	12.9	52	78	9	517	33	17	24	25	1.96
30728--31450	55	13.4	55	81	5	598	32	17	23	25	1.96
30781--31412	216	2.9	216	80	7	567	33	17	23	25	1.96
30936--31512	110	5.3	110	75	11	329	33	16	22	27	1.96
31291--31512	55	4.0	55	83	4	295	31	14	24	29	1.95
31208--31511	165	1.8	164	83	6	400	32	15	24	27	1.96
31208--31551	164	2.1	164	81	5	392	31	15	25	27	1.95
41382--41714	75	4.4	75	85	3	429	40	11	14	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41382--41714	150	2.2	150	86	3	474	40	11	14	33	1.82
41689--41760	23	3.1	23	89	0	108	37	11	16	34	1.84
41810--41860	23	2.2	23	96	0	93	35	17	15	31	1.92
41820--41881	23	2.7	23	89	0	88	37	14	11	37	1.82
41628--41930	121	2.5	121	87	0	444	38	12	15	33	1.85
41896--41976	42	1.9	42	97	0	153	53	4	9	32	1.56
42535--42774	107	2.2	107	88	2	349	31	15	12	39	1.86
44688--44729	18	2.3	18	88	8	59	42	7	16	33	1.75
50971--51025	18	3.1	18	94	0	92	16	18	5	60	1.55
53080--53112	11	3.0	11	100	0	66	63	0	0	36	0.95
53386--53416	2	15.5	2	93	0	53	45	0	3	51	1.17
56628--56750	62	2.0	61	88	1	183	35	17	25	21	1.95
70419--70506	42	2.1	41	82	2	104	35	17	15	31	1.91
70435--70527	42	2.2	42	79	5	109	33	16	19	31	1.94
70914--71153	88	2.7	87	77	2	248	30	18	16	34	1.93
72848--72982	20	6.7	20	80	7	121	33	24	17	24	1.96
72845--72982	61	2.3	61	85	0	195	34	23	17	23	1.96
73434--73492	20	3.0	20	87	0	73	16	18	22	42	1.89
74812--74856	18	2.5	18	88	0	72	26	44	15	13	1.83
75337--75403	20	3.4	20	81	2	73	38	23	22	14	1.92
75376--75440	33	2.0	33	93	3	114	47	20	18	13	1.82
75376--75457	19	4.6	19	74	22	97	46	19	19	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75469--75524	14	3.9	14	70	25	53	10	14	23	51	1.73
75471--75540	30	2.2	30	85	7	86	14	14	20	51	1.76
75534--75580	20	2.3	20	85	7	60	14	19	25	40	1.90
77432--77467	14	2.6	14	90	0	54	30	0	22	47	1.52
77550--77588	20	2.0	20	94	0	69	46	30	10	12	1.75
77594--77658	19	3.7	19	84	15	95	46	18	21	13	1.84
77684--77733	20	2.5	20	96	3	93	16	24	28	32	1.96
78713--78757	23	2.0	23	86	0	63	31	20	15	33	1.93
78944--78968	12	2.1	12	100	0	50	72	0	28	0	0.86
81242--81372	19	7.7	19	66	23	94	42	19	22	14	1.88
81242--81368	33	3.8	33	88	4	202	42	19	22	14	1.88
81243--81375	66	2.0	66	97	0	248	41	19	22	16	1.90
81378--81423	14	3.3	14	90	0	74	6	23	21	47	1.74
81545--81581	14	2.6	14	91	0	65	45	24	0	29	1.53
82975--83125	42	3.6	42	82	1	205	23	16	39	20	1.92
82951--83121	83	2.1	83	97	2	326	23	17	38	20	1.93
83335--83515	92	2.0	88	90	6	283	45	19	12	22	1.83

Tables:   1

The End!