genome.fa.s9333.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009333.1 Hibiscus syriacus cultivar Beakdansim tig00113100_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110513

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7383--7437	12	4.2	12	80	17	65	14	41	23	20	1.89
7380--7436	25	2.2	26	87	9	80	15	42	22	19	1.89
7397--7443	8	6.5	8	77	22	59	14	38	25	21	1.92
7380--7436	13	4.3	13	84	8	71	15	42	22	19	1.89
7413--7444	7	4.4	7	92	7	55	12	34	28	25	1.92
7397--7443	15	3.3	15	91	5	71	14	38	25	21	1.92
8748--8783	18	2.0	18	88	0	54	52	0	16	30	1.44
9923--10026	24	4.3	24	73	9	95	22	13	16	48	1.81
10181--10213	2	16.5	2	100	0	66	48	0	0	51	1.00
27835--27909	35	2.1	35	90	0	114	32	29	29	9	1.88
27949--28038	23	3.8	23	82	4	99	38	18	14	27	1.90
30550--30578	15	1.9	15	100	0	58	27	20	34	17	1.95
30546--30592	8	6.5	8	75	20	50	21	23	38	17	1.93
30574--30650	18	4.6	18	78	15	101	11	19	49	19	1.78
30568--30646	31	2.5	31	89	0	131	13	20	46	18	1.83
30568--30597	13	2.3	13	100	0	60	13	23	46	16	1.82
30592--30627	13	2.8	13	86	0	54	13	19	47	19	1.83
32687--32761	35	2.1	35	90	0	114	32	29	29	9	1.88
32801--32890	23	3.8	23	82	4	99	38	18	14	27	1.90
35404--35432	15	1.9	15	100	0	58	27	20	34	17	1.95
35400--35446	8	6.5	8	75	20	50	21	23	38	17	1.93
35428--35504	18	4.6	18	78	15	101	11	19	49	19	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35422--35500	31	2.5	31	89	0	131	13	20	46	18	1.83
35422--35451	13	2.3	13	100	0	60	13	23	46	16	1.82
35446--35481	13	2.8	13	86	0	54	13	19	47	19	1.83
40347--41172	410	2.0	409	95	0	1501	35	16	19	28	1.94
44353--44383	15	2.1	15	93	0	53	64	6	3	25	1.33
46655--46694	18	2.2	18	90	0	62	20	47	20	12	1.81
46642--46701	31	1.9	31	86	6	86	20	45	18	16	1.86
46677--46723	7	6.5	8	75	22	50	17	36	23	23	1.95
46629--46677	13	3.8	13	91	0	80	18	46	18	16	1.84
46672--46716	13	3.3	13	84	6	54	17	40	22	20	1.92
46677--46723	15	3.3	15	88	5	71	17	36	23	23	1.95
49238--49328	47	1.9	48	86	2	130	26	16	19	37	1.93
49238--49328	24	3.8	24	82	2	112	26	16	19	37	1.93
51522--51561	18	2.2	18	90	0	62	20	47	20	12	1.81
51509--51568	31	1.9	31	83	6	77	21	45	16	16	1.86
51544--51590	7	6.5	8	75	22	50	17	36	23	23	1.95
51496--51544	13	3.8	13	86	0	71	20	46	16	16	1.83
51539--51583	13	3.3	13	84	6	54	17	40	22	20	1.92
51544--51590	15	3.3	15	88	5	71	17	36	23	23	1.95
54103--54193	47	1.9	48	86	2	130	26	16	19	37	1.93
54103--54193	24	3.8	24	82	2	112	26	16	19	37	1.93
56399--56438	18	2.2	18	90	0	62	20	47	20	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56386--56445	31	1.9	31	86	6	86	20	45	18	16	1.86
56421--56467	7	6.5	8	75	22	50	17	36	23	23	1.95
56373--56421	13	3.8	13	91	0	80	18	46	18	16	1.84
56416--56460	13	3.3	13	84	6	54	17	40	22	20	1.92
56421--56467	15	3.3	15	88	5	71	17	36	23	23	1.95
58989--59079	23	3.9	24	81	5	105	27	14	20	37	1.92
58980--59069	47	1.9	47	86	4	128	26	15	20	37	1.92
59156--59220	34	1.9	34	100	0	130	7	29	30	32	1.85
74089--74152	24	2.7	24	77	0	65	50	15	9	25	1.74
74851--74975	29	4.3	29	74	6	110	40	21	8	29	1.82
74983--75025	12	3.3	12	84	12	50	18	25	39	16	1.91
74975--75005	7	4.4	7	100	0	62	25	29	32	12	1.93
75003--75053	18	2.9	17	91	5	84	15	19	47	17	1.83
75060--75111	9	5.3	10	84	11	72	36	30	19	13	1.90
78640--78709	12	5.8	12	76	6	70	51	18	14	15	1.77
78638--78729	48	1.9	48	88	0	139	48	17	14	19	1.80
78638--78744	48	2.2	48	85	3	135	47	17	14	19	1.82
78638--78746	24	4.5	25	76	6	100	47	17	15	19	1.82
81103--81132	7	4.1	7	91	8	51	26	26	33	13	1.93
81092--81165	8	9.5	8	76	20	77	22	22	36	17	1.95
81139--81213	13	5.4	13	80	14	78	16	20	46	17	1.84
81147--81187	18	2.3	18	95	0	73	9	21	48	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81139--81200	31	2.0	31	93	0	106	14	20	46	17	1.83
85372--85435	24	2.7	24	72	0	65	43	18	12	25	1.85
86145--86272	29	4.3	29	70	9	80	39	21	7	30	1.82
86273--86315	12	3.3	12	84	12	50	18	25	39	16	1.91
86293--86343	18	2.9	17	91	5	84	15	19	47	17	1.83
86358--86409	9	5.3	10	84	11	72	36	30	19	13	1.90
95244--95292	13	3.8	13	80	0	62	20	44	16	18	1.86
95257--95318	31	2.0	31	87	6	90	20	41	19	17	1.90
95270--95307	18	2.1	18	90	0	58	21	44	21	13	1.85
95309--95353	18	2.5	19	80	20	60	17	33	22	26	1.96
95310--95353	10	4.9	9	89	10	56	18	34	22	25	1.96
96628--96663	18	2.0	18	88	0	54	52	0	16	30	1.44
97790--97874	24	3.5	24	83	3	109	15	16	17	50	1.78
97789--97874	12	7.2	12	74	10	59	16	16	17	50	1.79
99965--100013	13	3.8	13	86	0	71	20	46	16	16	1.83
99978--100039	31	2.0	31	87	6	90	20	43	19	16	1.88
99991--100028	18	2.1	18	95	0	67	21	47	21	10	1.80
100031--100080	8	5.9	8	86	13	57	16	34	24	26	1.95
100031--100080	15	2.9	16	80	19	57	16	34	24	26	1.95
100031--100081	10	5.9	9	86	13	56	17	33	23	25	1.96
101262--101297	18	2.0	18	88	0	54	52	0	16	30	1.44
102421--102504	24	3.5	24	82	6	100	15	15	17	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102420--102504	12	7.2	12	70	12	50	16	15	17	50	1.78
104862--104895	15	2.2	16	89	5	52	58	5	2	32	1.37

Tables:   1

The End!