genome.fa.s9337.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009337.1 Hibiscus syriacus cultivar Beakdansim tig00113105_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64564

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11114--11376	45	5.9	45	75	7	214	23	15	19	42	1.89
11114--11376	90	2.9	89	77	10	241	23	15	19	42	1.89
11114--11385	135	2.0	134	84	2	348	23	14	19	41	1.89
12103--12758	55	12.0	55	81	2	741	29	20	18	31	1.96
16396--16433	20	2.0	20	89	5	60	23	18	7	50	1.73
25554--25596	21	2.1	20	83	12	52	16	4	6	72	1.24
26458--26503	19	2.4	19	100	0	92	19	26	26	28	1.99
27545--27679	45	3.0	45	78	0	171	34	12	22	30	1.92
38369--38536	41	4.1	41	82	4	178	38	20	10	31	1.86
41134--41239	41	2.9	34	75	22	99	42	4	10	42	1.60
41155--41221	21	3.2	21	69	12	66	43	4	10	41	1.59
41158--41222	20	3.2	20	68	12	60	43	4	12	40	1.63
41141--41231	41	2.2	41	98	0	173	41	4	10	42	1.60
41166--41232	21	3.2	21	69	12	66	40	4	10	44	1.59
41330--41379	20	2.5	21	80	9	59	28	22	2	48	1.62
45758--45821	32	2.0	32	96	0	119	34	14	15	35	1.88
46293--46355	25	2.5	25	92	0	99	30	22	11	36	1.89
51425--51516	34	2.8	31	78	14	87	39	1	11	47	1.48
54956--55017	21	3.0	21	95	0	106	27	17	25	29	1.98
57163--57337	63	2.7	65	84	7	221	29	0	15	54	1.45
57917--57952	17	2.1	17	94	0	63	27	0	2	69	1.02
58865--58898	16	2.2	15	89	5	50	44	11	2	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59361--59505	77	1.9	79	82	5	188	37	10	6	44	1.65

Tables:   1

The End!