Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000934.1 Hibiscus syriacus cultivar Beakdansim tig00001865_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40576

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
593--645
23
2.3
23
90
0
79
15
9
16
58
1.62
2097--2147
16
3.2
16
94
0
84
9
9
21
58
1.58
2213--2245
16
2.1
16
100
0
66
6
12
24
57
1.57
2750--2804
9
6.3
9
84
16
64
30
0
0
69
0.89
2750--2804
12
4.2
12
82
13
65
30
0
0
69
0.89
2752--2798
21
2.2
21
96
0
85
29
0
0
70
0.88
4637--4684
25
2.0
24
83
4
60
25
4
8
62
1.41
7801--7841
20
2.0
20
95
0
73
31
19
14
34
1.92
8434--8523
33
2.9
31
79
11
94
73
8
15
2
1.18
8441--8498
16
3.9
15
70
17
50
75
8
13
1
1.10
8480--8523
18
2.4
19
85
14
58
70
11
15
2
1.26
8696--8725
15
2.0
15
100
0
60
33
13
13
40
1.83
9551--9593
23
2.0
23
86
9
63
39
9
27
23
1.85
9716--12933
4
808.0
4
97
1
5604
47
25
2
25
1.64
13240--13405
35
4.5
37
78
7
151
32
16
14
36
1.89
14116--14236
66
1.9
63
84
8
163
32
11
14
42
1.81
14710--14769
32
1.9
31
86
3
84
28
15
15
41
1.86
14982--15081
40
2.5
40
80
6
112
26
32
20
22
1.98
15584--15636
3
17.7
3
78
21
58
33
0
0
66
0.92
15577--15629
9
5.6
9
81
18
63
32
0
0
67
0.91
15577--15632
21
2.7
21
94
5
96
32
0
0
67
0.91
15584--15635
12
4.6
12
79
20
67
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17491--17538
25
2.0
24
83
4
60
25
4
8
62
1.41
18596--18671
37
2.0
39
94
5
138
39
3
5
51
1.43
21742--21769
14
2.0
14
100
0
56
42
0
7
50
1.30
31852--31930
3
26.7
3
92
2
133
63
0
1
35
1.03
32274--33100
112
7.5
113
92
5
1319
27
19
14
38
1.91
32274--33100
326
2.5
329
90
6
1280
27
19
14
38
1.91
33937--34400
83
5.6
83
95
2
839
35
22
13
29
1.92
33937--34400
165
2.8
166
95
1
839
35
22
13
29
1.92
33937--34398
248
1.9
246
95
2
847
35
22
13
29
1.92
35032--35074
16
2.8
16
85
3
61
53
9
6
30
1.59
35397--35450
1
54.0
1
88
0
81
0
5
0
94
0.31
35396--35459
12
5.4
12
87
9
87
0
9
0
90
0.45
35396--35459
18
3.4
18
89
10
94
0
9
0
90
0.45

Tables:   1

The End!