Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009340.1 Hibiscus syriacus cultivar Beakdansim tig00113118_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 6851
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Found at i:551 original size:293 final size:300
Alignment explanation
Indices: 2--6851 Score: 10279
Period size: 294 Copynumber: 23.4 Consensus size: 300
1 G
*
2 CCGCACTTAAGGGAGTC-CAAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCCA
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTA-CCCCA
66 CTCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGA
65 CTCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGA
131 AAAAGA-GGG-GCAACACGAGGACTTCCCAGGAGGTCA-CCATCCTAGTACTACTCTCGCCCAAG
128 AAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
193 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT
193 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT
* *
258 GCCTTGCG-CATTAATTTA-TAAGGCGTTCGTTTTCTTACGGC
258 GCCTTGCGCCCTTAATTTATTAAGGCGTTCGTTTTCTTCCGGC
* * * **
299 CCACAC-TAAGGGACTCGTAAAATTCATATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
* *
363 TCCAGGCA-GC-AAATGCGTACGTGTGTGTGTTCGAGATAGAAT-AAAAGAAAATAATCCGAAAA
66 TCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
*
425 A-AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCAAAGCAC
131 AGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
489 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
196 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
554 TTGCGCCCTTAATTTATTAAGGCGTTCG-TTTCTTCCGGC
261 TTGCGCCCTTAATTTATTAAGGCGTTCGTTTTCTTCCGGC
593 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CCCGAACCTTTC-CCCCAAGTA-CCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
* *
655 TCCAGGCAGGCGGAATACGTACGGTGCGTTGTGTTCGAGATAGAATAAAAATAAAATAATCCG-A
66 TCCAGGCAGGCGGAATACGTAC-GTGTG-TGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAA
*
719 AAATAGGGGTGCAAC-CGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
129 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
783 ACGCTTAACTGCGGAGTGATTCTGAT-GGA-CCGGTGCATTA--GCTGGTATGATCGCACCCGTC
194 ACGCTTAACTGCGGA--G-TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC
844 ATGCCTTGCGCCCTTAATTTATTTAAGG-GTTCGTTTTCTTCCGGC
256 ATGCCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
*
889 CCG--CTTAA--GAGTC-CAAAATTCGGATT-TACGCCCCGAACCTTTCTCCCC-AGTA--CCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
945 T-CAGGCA-GCGGAATACGTACGTGTGTGTGGTTCGAGATAGAATAAAAATAAAAT-ATCCGAAA
66 TCCAGGCAGGCGGAATACGTACGTGTGTGT-GTTCGAGATAGAATAAAAAGAAAATAATCCGAAA
1007 AAGAGGGGTGCAACACGAGGACCTT-CCAGGAGGTCA-CCATCCTAGTACTACTCTCGCCCAAGC
130 AAGAGGGGTGCAACACGAGGA-CTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
1070 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
194 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
*
1135 CCTTGCGCGCCTTAATTTATAAAGGCGTTCG-TTTCTTCCGGC
259 CCTTGCGC-CCTTAATTTATTAAGGCGTTCGTTTTCTTCCGGC
1177 CCGCACTTAA-GGAGTCGCAAAATTCGGATTCTACG-CCCGAACCTTTCTCCCCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
1240 TCCAGGCAGGCGGAATACGTA-GTGTGCGTGTGTTCGAGAT--AA-AAAAA-TAAATAATCCGAA
66 TCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAA
*
1300 AATA-A-GGGTGCAACACG-GAACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA-
129 AA-AGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
1361 CACGCTTAACTGCGGAGTTCTGAT-GGAT-CGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT
193 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT
* *
1424 GCCTGGCGCCCTTAATTTAATAAGGCGTTCGTTTTCTTCCGGC
258 GCCTTGCGCCCTTAATTTATTAAGGCGTTCGTTTTCTTCCGGC
*
1467 CACGCACTTAAAGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCA
1 C-CGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCA
*
1532 CTCCAGGCA-GCGGAATACGTACGTGTGCGTGTGTCGAGATAGAATAAAAAGAAAATAATCCGAA
65 CTCCAGGCAGGCGGAATACGTACGTGTGTGTGT-TCGAGATAGAATAAAAAGAAAATAATCCGAA
1596 AATA-A-GGGTGC-ACAC--GGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
129 AA-AGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
1656 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCAACCCGTCA
193 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGC-ACCCGTCA
*
1721 TG-C-TGCGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTAC-GC
257 TGCCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
* * * ** *
1763 CCACACTTAAGGGACTCG-TAAATTCATATTCTACGACCCGAACCTTTCTCCCCCAGTA-CCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
1826 TCCAGGCAGGC-G-A-ACGT-CGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
66 TCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
*
1887 ATAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCG-CCAAGCAC
131 AGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
* * *
1951 GCTTAACTGCGGAGATCTGATGGGATCCGGTGCATTAGTGCTAGTATGATCGTACCCGTCATGCC
196 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
2016 TTGCGCCCTTAATTTATTTAAGGCG-TCGTTTTCTT-C-GC
261 TTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
* *
2054 TCCACACTTAAGGGAGTCGTAAAATTC--ATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCA
1 -CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCA
*
2117 CTCCAGGCAGGCGGAATGCGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAAT-ATCCGAAA
65 CTCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAA
* *
2181 AATAGGGGTGCAACACGAGGACTT-CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGAA
130 AAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
*
2245 CGC-TAACTGCGGAGTTCTGATGGGATCTGGTGCATTAGTGC-GGTATGATCGCACCCGTCATGC
195 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGC
2308 CTTGCGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCCGGC
260 CTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
*
2350 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
2415 TCCAGGCAGGAGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAG-AAATAATCCGAA
66 TCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCG--
2479 AAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
127 AAAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
2544 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATT-GTGCTGGTATGATCGCACCCGTCA
192 GCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCA
2608 TG-CTTGCG-CCTTAATTTATTTAA---G--CGTTTTCTTCCGGC
257 TGCCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
* * *
2646 CCGTACTTAAGGGAGTC-CAAAATTCGGATTCTACGCCCCGAACATTTCT-CCCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
2709 TCCAGGCAGG-GGAAATACGTACGTGTGCGTGTTCGAGATAGAATAAAAAAGAAAATAATCCGAA
66 TCCAGGCAGGCGG-AATACGTACGTGTGTGTGTTCGAGATAGAAT-AAAAAGAAAATAATCCGAA
* *
2773 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAATACTACTCTCGCCCAACC
129 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
2838 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
194 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
* * *
2903 CCTTGTGCCCTTAATTTATTTAAGGTGTTTGTTTTCTTCCGGC
259 CCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
*
2946 CCGCACTTAAGGG-GTCGCAAAATTCGGATTCTACGCCCCGAACCTTTCT--CCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
* *
3008 TCTAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAAT-AAAAGAAAAATAAT-CTA
66 TCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGATAGAATAAAAAG-AAAATAATCCGA
* *
3071 AAAA-AGGGGTGC-ACACAAGGACTTCCCAGGAGGTCACCCATCTTAGTACTACTCTCG-CCAAG
128 AAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
3133 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT
193 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT
*
3198 GCCTTGCGCTCTTAATTTATTTAAGGCGTT--TTTTCTT-CGGC
258 GCCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
*
3239 CCGCACTTAAGGGAGTCTCAAAATTCGGATT-TACG-CCCGAACC-TT-TCCCCAAGTA-CCC-C
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
* *
3298 TCCAGGCAGGCGGAATACGTAGGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
66 TCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
3363 AG-GGGGTGCAACAACGAGGACTTCCCA-GAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
131 AGAGGGGTGCAAC-ACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
3426 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGC
195 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGC
* *
3491 CTTGCGCCCTTAATTTATTTAAGGCGTTCGTTTTTCTTAC-GA
260 CTTGCGCCCTTAATTTA-TTAAGGCGTTCG-TTTTCTTCCGGC
*
3533 CC-CACTTAA-GG-GT--AAAAATT-GGATTCTACGACCCGAACCTTTCTCCCCAAGTA-CCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
3591 TCCAGGCAGGCGGAATACGTAC----GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
66 TCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
* ** *
3652 ATAGGGGTGCAACACGAGGACTTCCCAGGAGGAAACCCATCCTAGTACTACTCTCGCCCAACCAC
131 AGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
*
3717 GCTTAACTGCGGAGTTCTGATGGGATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
196 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
*
3782 TTACG-CCTTAATTTATTTAAGGCGTTCGTTTTCTTCCGGC
261 TTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
*
3822 CCGTACTTAAGGGA----CAAAATTC-GATTCTACGACCCGAACCTTTCT-CCCAAGTA-CCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
3880 TCCAGGCAGGCGGAAATACGTAC----GTGTGTTCGAGATAGAATAAAAAG-AAATAATCCGAAA
66 TCCAGGCAGGCGG-AATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAA
* * *
3940 AATAGGGGTGTAACACGAGGACTTCCCAGGAGGTCACCCATCCTAG---TACTCTCGCCCAACCA
130 AAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
4002 -GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGC
195 CGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGC
*
4066 CTTACGCCCTTAATTTATTAAGGCGTTCG-TTTCTTCCGG-
260 CTTGCGCCCTTAATTTATTAAGGCGTTCGTTTTCTTCCGGC
**
4105 CCGCACTTAAGGGA--CGCATAAAATTCATATT-T-CGACCCGAACC-TTCTCCCCAAGTA-CCC
1 CCGCACTTAAGGGAGTCGC--AAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCC
*
4164 ACTCCAGGCAGGCGGAATTACGTAC--GTGCGTGTTCGAGATAGAATAAAAAGAAAATAATCCG-
64 ACTCCAGGCAGGCGGAA-TACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGA
* *
4226 AAAATAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAC
128 AAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
4291 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGC-TTAG-G--GGTATGATCGCACCCGTCAT
193 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT
4352 GCCTT-CGCCCTTAA-TTATTAAGGCGTTCGTTTTCTTCCGGC
258 GCCTTGCGCCCTTAATTTATTAAGGCGTTCGTTTTCTTCCGGC
* *
4393 CCGCACTTAAGGGAGTCGTAAAATTCGGATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
4458 TCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCAAA
66 TCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAA
* *
4523 AAATAGGGTTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA-C
129 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * *
4587 ACGCTTAACTAC-GAGTT-T-CTGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAT-
194 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
* *
4648 TCTTGCGCCCTTAATTTATTAAGGCGTT--TTTT-TTACGGC
259 CCTTGCGCCCTTAATTTATTAAGGCGTTCGTTTTCTTCCGGC
* *
4687 CC-AACTTAAGGGAAGT----AAATT--TATTCTACG-CCCG-ACCTTTTCTCCCCAAGTAACCC
1 CCGCACTTAAGGG-AGTCGCAAAATTCGGATTCTACGACCCGAACC-TTTCTCCCCAAGT-ACCC
*
4743 CACTCCAGGCAGGCGGAATACGTACGTGTGTGTTTTCGAGATAGAATAAAAAGAAAATAATCCGA
63 CACTCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGA
4808 AAAAGAGGGGTGC-A-ACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
128 AAAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
4871 --CGCTTAACTGCGGAGTTCTGATGGGA-----TGCATTAGTGCTGGTATGATCGCACCCGTCAT
193 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAT
*
4929 GCCTTGCG--CTTAATTTATTTAAGGCGTTCGTTTTCTTCCAGC
258 GCCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
* *
4971 CCGTACTTAAGGG-GTCGCAAAATTCGGATTCTACGCCCCGAACC-TTCT-CCCAAGTA-CCC-C
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
5031 TCCAGGAAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAAT-AAAAGAAAATAATCCGAA
66 TCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAA
* *
5095 AAAGA-GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCAAAAA
129 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC-CAAG
5159 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATT-GTGCTGGTATGATCGCACCCCGTCA
193 CACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCA-CCCGTCA
5223 TGCCTTGCGCCCTTAATTTATTTAAGGCGTTCGTTTTCTTCCGGC
257 TGCCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
* *
5268 CCACACTTAAGGGAGTCGTAAAATTCGGATATTCTACGACCCGAACCTTTCTCCCCAAGTA-CCC
1 CCGCACTTAAGGGAGTCGCAAAATTCGG--ATTCTACGACCCGAACCTTTCTCCCCAAGTACCCC
**
5332 ACTCCAGGCA-GAAG-A-ACGTACGTGTGTGTGTTCG-GATAGAAT-AAAAGAAAATAATCCGAA
64 ACTCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAA
* *
5392 AAAGA-GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTA-TACTACTCTCGCCAAAGA
129 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
*
5455 ACGCTTAACTGCGGAGTTCTAATGGGATCCGGTGCATTAGTGCT-GTATGATCGCACCCGTCATG
194 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
*
5519 CCTTGGCGCCCTTAATTTAATTTAAGGCGTTCG-TTTCTTACGG-
259 CCTT-GCGCCCTTAATTT-A-TTAAGGCGTTCGTTTTCTTCCGGC
* * **
5562 CCACACTTAAGGGA--CGTAAAATTCATATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
5625 TCCAGGAAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAAT-AAAAGAAAAT-ATCCGAAAA
66 TCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
*
5688 ATAGGGGTGCAACACGAGGACTTCCCAGGA-GTCA-CCATCCTAGTACTACTCTCGCCCAAGCAC
131 AGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
5751 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
196 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
*
5816 TTGCGCCCTTAATTTATTTAAGGCGTTTG-TTTCTTCCGG-
261 TTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
5855 CC-CACTTAAGGGAGTCGCAAAATTCGGATTCTACG-CCCGAACCTTTCT-CCCAA-TACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
5916 TCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT-CAAA
66 TCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAA
5980 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTC-CCCATCCTAGTA-TACTCTCGCCCAAGC
129 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
*
6043 ACGCTTAACTACGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
194 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
*
6108 CCTTGCGCCCTTAATTTATTTAAGGTGTTCGTTTTCTTCCGGC
259 CCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
* *
6151 CCGCAC-TAAGGGAGTCCCAAAATTCGGATTCTACGCCCCGAA-CTTTCTCCCC-A--ACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
6211 TCCAGGCAGGCGGAATACGTACGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAA
66 TCCAGGCAGGCGGAATACGTACGTGT--GTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAA
6276 AAAGA-GGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
129 AAAGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
6340 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTC-TG
194 ACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATG
*
6404 CCTTGCGCCCTTAATTTATTTAAGGTG-T--TTTTCTTCCGGC
259 CCTTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
6444 CCGCACTTAA-GGAGTCGCAAAATTCGGATTCTACG-CCCGAACCTTTCT-CCCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
* ** *
6506 TCCAGGCATGCGGAATACGTGTGTGCGTGTGTTCGAGATAGAATAAAAAGAAAATAAT-CGAAAA
66 TCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
* *
6570 AGTGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT-CTAGTA-TACTCTCG-ACAAGCAC
131 AGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
6632 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
196 GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
*
6697 TTGCGCCCTTAATTTATTTAAGGCGTTTGTTTTCTTCCGGC
261 TTGCGCCCTTAATTTA-TTAAGGCGTTCGTTTTCTTCCGGC
*
6738 CCGCACTT-AGGGAGTCGCAAAATTC-GATTCTACGCCCCGAACCTTTCTCCCCAAGTACCCCAC
1 CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
*
6801 TCCAGGCAGGCGG-A-A--TACGTGTGCGTG-TCGAGATAGAATAAAAAGAAAATA
66 TCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATA
Statistics
Matches: 6116, Mismatches: 189, Indels: 503
0.90 0.03 0.07
Matches are distributed among these distances:
280 9 0.00
281 41 0.01
282 6 0.00
283 29 0.00
284 77 0.01
285 135 0.02
286 184 0.03
287 198 0.03
288 293 0.05
289 291 0.05
290 498 0.08
291 385 0.06
292 549 0.09
293 620 0.10
294 711 0.12
295 654 0.11
296 552 0.09
297 464 0.08
298 54 0.01
299 85 0.01
300 92 0.02
301 63 0.01
302 65 0.01
303 61 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (300 bp):
CCGCACTTAAGGGAGTCGCAAAATTCGGATTCTACGACCCGAACCTTTCTCCCCAAGTACCCCAC
TCCAGGCAGGCGGAATACGTACGTGTGTGTGTTCGAGATAGAATAAAAAGAAAATAATCCGAAAA
AGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAC
GCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCATGCC
TTGCGCCCTTAATTTATTAAGGCGTTCGTTTTCTTCCGGC
Done.