Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009341.1 Hibiscus syriacus cultivar Beakdansim tig00113121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 151722
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Found at i:370 original size:22 final size:22
Alignment explanation
Indices: 296--362 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
286 TTATGGACAT
296 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
318 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
340 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
362 A
1 A
363 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:6395 original size:21 final size:21
Alignment explanation
Indices: 6369--6411 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6359 TTTCTGGGTT
* *
6369 AGGGGAATCGGTACCCATTCA
1 AGGGGAACCGATACCCATTCA
*
6390 AGGGGAACCGATACCCCTTCA
1 AGGGGAACCGATACCCATTCA
6411 A
1 A
6412 CGAAATGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAACCGATACCCATTCA
Found at i:6523 original size:67 final size:67
Alignment explanation
Indices: 6391--6541 Score: 214
Period size: 67 Copynumber: 2.3 Consensus size: 67
6381 ACCCATTCAA
* * *
6391 GGGGAACCGATACCCCTTCAACGAAATGAATTTCCAGAATGCTAGAGGGGAATCGGTACCCCCAG
1 GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCCAG
6456 GG
66 GG
* * * *
6458 GGGGAACCGATACCCCCTCATCGTATATGAAATTCCAGATTGCTTGAGGGGAATCGATA-CCCCA
1 GGGGAACCGATACCCCCTCAACG-AAATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCCA
6522 GGG
65 GGG
*
6525 GGGGAACCGATTCCCCC
1 GGGGAACCGATACCCCC
6542 ATGAGAAAAA
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
67 45 0.60
68 30 0.40
ACGTcount: A:0.27, C:0.27, G:0.28, T:0.18
Consensus pattern (67 bp):
GGGGAACCGATACCCCCTCAACGAAATGAAATTCCAGAATGCTAGAGGGGAATCGATACCCCCAG
GG
Found at i:6901 original size:26 final size:28
Alignment explanation
Indices: 6842--6915 Score: 98
Period size: 26 Copynumber: 2.6 Consensus size: 28
6832 CATATTATGA
*
6842 TACATGACATGAATTTGTATTAAATGTAT
1 TACATGACATGAA-TTGCATTAAATGTAT
*
6871 TACATGACATGAATT-CA-TATATGTAT
1 TACATGACATGAATTGCATTAAATGTAT
6897 TACATGACATGAATATGCA
1 TACATGACATGAAT-TGCA
6916 GAAAAGTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
26 22 0.54
27 2 0.05
28 4 0.10
29 13 0.32
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (28 bp):
TACATGACATGAATTGCATTAAATGTAT
Found at i:6966 original size:30 final size:31
Alignment explanation
Indices: 6924--6983 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 31
6914 CAGAAAAGTT
*
6924 ATATGCACTATGTGATAAAGGTATGTAAATG
1 ATATGCACTATGTGATAAAGGTATGGAAATG
*
6955 ATATGC-CTATGTGTTAAAGGTATGGAAAT
1 ATATGCACTATGTGATAAAGGTATGGAAAT
6984 ACTATGTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.78
31 6 0.22
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (31 bp):
ATATGCACTATGTGATAAAGGTATGGAAATG
Found at i:7277 original size:22 final size:22
Alignment explanation
Indices: 7203--7269 Score: 134
Period size: 22 Copynumber: 3.0 Consensus size: 22
7193 TTATGGACAT
7203 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
7225 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
7247 AATTCTACGGGCACTTCGGTGC
1 AATTCTACGGGCACTTCGGTGC
7269 A
1 A
7270 TTTATACGAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 45 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (22 bp):
AATTCTACGGGCACTTCGGTGC
Found at i:8212 original size:19 final size:19
Alignment explanation
Indices: 8190--8320 Score: 103
Period size: 19 Copynumber: 7.7 Consensus size: 19
8180 GGAAATTACT
8190 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
8209 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
8223 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
8242 ATCGCAA--CG--CT-AAT
1 ATCGCAATGCGAAATGAAA
*
8256 TTCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
8275 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
8289 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
8308 ATCGCAACGCGAA
1 ATCGCAATGCGAA
8321 TTTAATTTCG
Statistics
Matches: 86, Mismatches: 11, Indels: 30
0.68 0.09 0.24
Matches are distributed among these distances:
14 28 0.33
15 3 0.03
16 6 0.07
17 6 0.07
18 3 0.03
19 40 0.47
ACGTcount: A:0.44, C:0.20, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:8232 original size:33 final size:33
Alignment explanation
Indices: 8190--8316 Score: 211
Period size: 33 Copynumber: 3.8 Consensus size: 33
8180 GGAAATTACT
8190 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
**
8223 ATCGCAATGCGAAATGAAAATCGCAACGCTA-A
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
8255 TTTCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 -ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
8289 ATCGCAATGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
8317 CGAATTTAAT
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
32 1 0.01
33 84 0.98
34 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.22, T:0.15
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:8297 original size:66 final size:66
Alignment explanation
Indices: 8191--8323 Score: 257
Period size: 66 Copynumber: 2.0 Consensus size: 66
8181 GAAATTACTA
*
8191 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
8256 T
66 T
8257 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
1 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
8322 T
66 T
8323 T
1 T
8324 AATTTCGCGT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.42, C:0.20, G:0.22, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGCGAAT
T
Found at i:8369 original size:19 final size:19
Alignment explanation
Indices: 8345--8391 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
8335 GCGATTCTCT
*
8345 CGTTGCGATTTTCATTTTG
1 CGTTGCGATTTTCATTTCG
8364 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
8383 CATTGCGAT
1 CGTTGCGAT
8392 AGTACTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:8523 original size:14 final size:14
Alignment explanation
Indices: 8500--8533 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
8490 TCAATTAAAC
8500 AATCAACTTTTACA
1 AATCAACTTTTACA
*
8514 AATCACCTTTTACA
1 AATCAACTTTTACA
8528 AATCAA
1 AATCAA
8534 TTAAACAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (14 bp):
AATCAACTTTTACA
Found at i:9974 original size:42 final size:42
Alignment explanation
Indices: 9928--10091 Score: 186
Period size: 42 Copynumber: 3.9 Consensus size: 42
9918 CGATAACAGT
* * *
9928 GGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* * * * * *
9970 GGCCTCTTCAATGATAGGAGTGGACTCTTGAGGGATGACAGT
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
* *
10012 GGCCTCTTGAACGGT-GGAAGGGGACTCTCGAGGAATGATAGG
1 GGCCTCTTCAACGATAGG-AGGGGACTCTCGAGGAATGATAGG
* * *
10054 GGCCTCTTCAACGATAGGAGTGGACTCTTGAGGGATGA
1 GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGA
10092 CAGGCGAGTC
Statistics
Matches: 98, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
41 2 0.02
42 94 0.96
43 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.38, T:0.22
Consensus pattern (42 bp):
GGCCTCTTCAACGATAGGAGGGGACTCTCGAGGAATGATAGG
Found at i:10034 original size:84 final size:84
Alignment explanation
Indices: 9923--10094 Score: 326
Period size: 84 Copynumber: 2.0 Consensus size: 84
9913 TTCAACGATA
* *
9923 ACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAATGATAGG
1 ACAGTGGCCTCTTGAACGGTGGAAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGG
9988 AGTGGACTCTTGAGGGATG
66 AGTGGACTCTTGAGGGATG
10007 ACAGTGGCCTCTTGAACGGTGGAAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGG
1 ACAGTGGCCTCTTGAACGGTGGAAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGG
10072 AGTGGACTCTTGAGGGATG
66 AGTGGACTCTTGAGGGATG
10091 ACAG
1 ACAG
10095 GCGAGTCGGG
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.24, C:0.17, G:0.37, T:0.22
Consensus pattern (84 bp):
ACAGTGGCCTCTTGAACGGTGGAAGGGGACTCTCGAGGAATGATAGGGGCCTCTTCAACGATAGG
AGTGGACTCTTGAGGGATG
Found at i:10488 original size:91 final size:90
Alignment explanation
Indices: 10311--10497 Score: 295
Period size: 91 Copynumber: 2.0 Consensus size: 90
10301 ATATTTCAAA
*
10311 ACTTCAACCAAAACACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTCAACCAAAACACAAAACAAAGACAAATACTAACTTCACAGTGTT--A-AATAAACAGTTTA
10376 GCAGAATTGGCAGCAACCGAATAAATTT
63 GCAGAATTGGCAGCAACCGAATAAATTT
*
10404 ACTTCAACCAAAAGACAAAACAAAAAGACAAATACTAACTTCACAGTGTT-AATAAACAGTTTAG
1 ACTTCAACCAAAACACAAAAC--AAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAG
*
10468 CAGTATTGGCAGCAACCGAATAAATTT
64 CAGAATTGGCAGCAACCGAATAAATTT
10495 ACT
1 ACT
10498 AAGCAATCTA
Statistics
Matches: 89, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
91 42 0.47
93 20 0.22
95 27 0.30
ACGTcount: A:0.47, C:0.20, G:0.12, T:0.21
Consensus pattern (90 bp):
ACTTCAACCAAAACACAAAACAAAGACAAATACTAACTTCACAGTGTTAAATAAACAGTTTAGCA
GAATTGGCAGCAACCGAATAAATTT
Found at i:10700 original size:63 final size:63
Alignment explanation
Indices: 10641--10782 Score: 169
Period size: 63 Copynumber: 2.3 Consensus size: 63
10631 CTTAGAGCGG
* * *
10641 CAACCTCAC-CACGTAAAGTAGACACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTAC
1 CAACCTC-CTCACGCAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGCAC
* * * *** *
10704 CGATCTCCTCACGCAAGGCATTGACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTAC
1 CAACCTCCTCACGCAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGCAC
*
10767 CAATCTCCTCACGCAA
1 CAACCTCCTCACGCAA
10783 GGCAATGACC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
62 1 0.01
63 68 0.99
ACGTcount: A:0.27, C:0.37, G:0.16, T:0.19
Consensus pattern (63 bp):
CAACCTCCTCACGCAAAGCAGACACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGCAC
Found at i:10783 original size:63 final size:63
Alignment explanation
Indices: 10664--10794 Score: 244
Period size: 63 Copynumber: 2.1 Consensus size: 63
10654 TAAAGTAGAC
* *
10664 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCGATCTCCTCACGCAAGGCATTG
1 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCAATCTCCTCACGCAAGGCAATG
10727 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCAATCTCCTCACGCAAGGCAATG
1 ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCAATCTCCTCACGCAAGGCAATG
10790 ACCTC
1 ACCTC
10795 ATCACGTAAC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.25, C:0.37, G:0.18, T:0.20
Consensus pattern (63 bp):
ACCTCCACACGCCATGCACCATCGTTATCGCGTAGAGTACCAATCTCCTCACGCAAGGCAATG
Found at i:12291 original size:19 final size:19
Alignment explanation
Indices: 12240--12384 Score: 130
Period size: 19 Copynumber: 8.1 Consensus size: 19
12230 TCTTTTGGTT
* *
12240 GAAATGAAAATCGCAATGA
1 GAAATGAAAATCGCAACGC
*
12259 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
12279 GAAATGACTATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
12296 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
12312 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
12331 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
12348 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
* *
12364 GAAATGAAAATTGCAATGC
1 GAAATGAAAATCGCAACGC
12383 GA
1 GA
12385 TTTTGGTTTC
Statistics
Matches: 103, Mismatches: 12, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
14 19 0.18
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 56 0.54
20 16 0.16
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:12307 original size:33 final size:33
Alignment explanation
Indices: 12265--12329 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
12255 ATGAGATAAT
**
12265 GAGAATCGCAACGCGAAATGACTATCGCAACGA
1 GAGAATCGCAACGCGAAATGAAAATCGCAACGA
12298 GAGAATCGCAACGCGAAATGAAAATCGCAACG
1 GAGAATCGCAACGCGAAATGAAAATCGCAACG
12330 CGAAATGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.42, C:0.23, G:0.25, T:0.11
Consensus pattern (33 bp):
GAGAATCGCAACGCGAAATGAAAATCGCAACGA
Found at i:12324 original size:52 final size:52
Alignment explanation
Indices: 12248--12384 Score: 202
Period size: 52 Copynumber: 2.6 Consensus size: 52
12238 TTGAAATGAA
* * * **
12248 AATCGCAATGAGATAATGAGAATCGCAACGCGAAATGACTATCGCAACGAGAG
1 AATCGCAACGCGA-AATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
12301 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
* *
12353 AATCGCAACGCGAAATGAAAATTGCAATGCGA
1 AATCGCAACGCGAAATGAAAATCGCAACGCGA
12385 TTTTGGTTTC
Statistics
Matches: 77, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
52 66 0.86
53 11 0.14
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.13
Consensus pattern (52 bp):
AATCGCAACGCGAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGAGAG
Found at i:12402 original size:19 final size:19
Alignment explanation
Indices: 12380--12424 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
12370 AAAATTGCAA
*
12380 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
* *
12399 TGCGTTTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
12418 TGCGATT
1 TGCGATT
12425 CTCTCGTTGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.07, C:0.16, G:0.27, T:0.51
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:13030 original size:20 final size:20
Alignment explanation
Indices: 12981--13094 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
12971 CGCTATGTAA
* * *
12981 ATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATAGTCAGT
* *
13001 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * *
13021 ATCTCATTGCGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTCAGT
*
13042 ATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGATAGTCAGT
*
13062 ATCGAATTGCGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
13082 ATCGCATTGCGAT
1 ATCGCATTGCGAT
13095 TTTCCCAATT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
19 3 0.04
20 61 0.77
21 13 0.16
22 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:13113 original size:61 final size:61
Alignment explanation
Indices: 12981--13115 Score: 155
Period size: 61 Copynumber: 2.2 Consensus size: 61
12971 CGCTATGTAA
* * ** * ** *
12981 ATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGTATCTCATTGCGATTTTGTATT
1 ATCGCGTTGCGATAGTAAGAATCGAATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
* * *
13042 ATCGCATTGCGATAGTAAGTATCGAATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 ATCGCGTTGCGATAGTAAGAATCGAATTGCGAAAGTCAGTATCGCATTGCGATTTT-CCAAT
13104 -TCGCGTTGCGAT
1 ATCGCGTTGCGAT
13116 TTACTTATTC
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 59 0.97
62 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (61 bp):
ATCGCGTTGCGATAGTAAGAATCGAATTGCGAAAGTCAGTATCGCATTGCGATTTTCCAAT
Found at i:13206 original size:12 final size:12
Alignment explanation
Indices: 13189--13222 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
13179 TCCAACTATC
13189 GCAACGCGAAAT
1 GCAACGCGAAAT
13201 GCAACGCGAAAT
1 GCAACGCGAAAT
13213 GCAACGCGAA
1 GCAACGCGAA
13223 TTTGTGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.41, C:0.26, G:0.26, T:0.06
Consensus pattern (12 bp):
GCAACGCGAAAT
Found at i:15225 original size:23 final size:23
Alignment explanation
Indices: 15199--15288 Score: 101
Period size: 23 Copynumber: 3.9 Consensus size: 23
15189 CTATTTCCAG
* *
15199 TTATGTTCCTTTATGTTCATTTA
1 TTATGTTCATTTATGTTCGTTTA
*
15222 TTATGTTCATTTACGTTCGTTTA
1 TTATGTTCATTTATGTTCGTTTA
* *
15245 TTGTGTT-GTTTATGTTCGTTTA
1 TTATGTTCATTTATGTTCGTTTA
**
15267 CTTCCGTTCATTTATGTTCGTT
1 -TTATGTTCATTTATGTTCGTT
15289 CATTTGTGTT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
22 13 0.23
23 31 0.55
24 12 0.21
ACGTcount: A:0.13, C:0.13, G:0.14, T:0.59
Consensus pattern (23 bp):
TTATGTTCATTTATGTTCGTTTA
Found at i:15227 original size:13 final size:13
Alignment explanation
Indices: 15209--15234 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
15199 TTATGTTCCT
15209 TTATGTTCATTTA
1 TTATGTTCATTTA
15222 TTATGTTCATTTA
1 TTATGTTCATTTA
15235 CGTTCGTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62
Consensus pattern (13 bp):
TTATGTTCATTTA
Found at i:15298 original size:14 final size:14
Alignment explanation
Indices: 15271--15302 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
15261 CGTTTACTTC
15271 CGTTCATTTATGTT
1 CGTTCATTTATGTT
*
15285 CGTTCATTTGTGTT
1 CGTTCATTTATGTT
15299 CGTT
1 CGTT
15303 TATCATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.16, G:0.19, T:0.56
Consensus pattern (14 bp):
CGTTCATTTATGTT
Found at i:16397 original size:13 final size:13
Alignment explanation
Indices: 16379--16409 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
16369 ATTATTGTCA
16379 GTGAGATATTTGT
1 GTGAGATATTTGT
16392 GTGAGATATTTGT
1 GTGAGATATTTGT
16405 GTGAG
1 GTGAG
16410 GTATGTCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (13 bp):
GTGAGATATTTGT
Found at i:16686 original size:35 final size:35
Alignment explanation
Indices: 16646--16717 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
16636 TTGATGCTAT
16646 TTATAATAAGTCATGCCACTTGGTAAATAGACTTA
1 TTATAATAAGTCATGCCACTTGGTAAATAGACTTA
* *
16681 TTATAATAAGTCATGTCACTTGGTAAATTGACTTA
1 TTATAATAAGTCATGCCACTTGGTAAATAGACTTA
16716 TT
1 TT
16718 TTTTAGTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (35 bp):
TTATAATAAGTCATGCCACTTGGTAAATAGACTTA
Found at i:16887 original size:13 final size:13
Alignment explanation
Indices: 16869--16898 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
16859 AATCTTAGAC
16869 ACAACTTTGAGAA
1 ACAACTTTGAGAA
*
16882 ACAACTTTGAGAC
1 ACAACTTTGAGAA
16895 ACAA
1 ACAA
16899 TTCACAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (13 bp):
ACAACTTTGAGAA
Found at i:21868 original size:13 final size:13
Alignment explanation
Indices: 21850--21876 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21840 ATAGTTGAAA
21850 CAGTCTTCATATG
1 CAGTCTTCATATG
21863 CAGTCTTCATATG
1 CAGTCTTCATATG
21876 C
1 C
21877 GCGTCTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:25655 original size:45 final size:43
Alignment explanation
Indices: 25606--25716 Score: 114
Period size: 44 Copynumber: 2.6 Consensus size: 43
25596 GGAGGTTCAA
* * * ** * *
25606 TTTTTAAATATTTTTTATTATGAGTATACTCTTAAAATTTTCTT
1 TTTTTTAACATTTGTTATTATGAAGATACCCTTAAAA-TTTATT
*
25650 TTTTTTAACATTTGTTATTATGAAGCTACCCTTAAAATTTATT
1 TTTTTTAACATTTGTTATTATGAAGATACCCTTAAAATTTATT
* * *
25693 TTTTTCAACACTTATTATTATGAA
1 TTTTTTAACATTTGTTATTATGAA
25717 CAATTATTTA
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
43 26 0.46
44 30 0.54
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (43 bp):
TTTTTTAACATTTGTTATTATGAAGATACCCTTAAAATTTATT
Found at i:28023 original size:28 final size:29
Alignment explanation
Indices: 27991--28049 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
27981 TGTTTATATT
* *
27991 AGCAC-TAGTGTGTAAAGACATTTAGTGC
1 AGCACATAGTGTGTAAAGACACTAAGTGC
*
28019 AGCACTATAGTGTGTAAGGACACTAAGTGC
1 AGCAC-ATAGTGTGTAAAGACACTAAGTGC
28049 A
1 A
28050 TATGGTGGCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 5 0.19
30 21 0.81
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (29 bp):
AGCACATAGTGTGTAAAGACACTAAGTGC
Found at i:29132 original size:21 final size:21
Alignment explanation
Indices: 29103--29155 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
29093 ATTCTGACTA
29103 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
29124 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
29145 TCGCAATGCGA
1 TCGCATTGCGA
29156 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:29175 original size:41 final size:40
Alignment explanation
Indices: 29145--29392 Score: 202
Period size: 41 Copynumber: 6.2 Consensus size: 40
29135 TTTTCCTAAT
*
29145 TCGCAATGCGAATACGTAAATCACAATGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGATTACGTAAA
* *
29185 TCGCAATGCGAATTAGGAAAATCGCAATGCGATTACGTAAA
1 TCGCAATGCGAA-TACGTAAATCGCAATGCGATTACGTAAA
*
29226 TCGCAATGCGAATACGT-AATCGCATTGCGATTTACGT-AA
1 TCGCAATGCGAATACGTAAATCGCAATGCGA-TTACGTAAA
* * * * * *
29265 TCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT-AA
1 TCGCAATGCGA-ATACGTAAATCGCAATGCGA-TTACGTAAA
* * * * * * *
29306 TTGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGT-AA
1 TCGCAATGCGA-ATACGTAAATCGCAATGCGA-TTACGTAAA
* * *
29347 TCGCATTGCGATTTACGT-AATCGCATTGCGATTTA-GTAAA
1 TCGCAATGCGA-ATACGTAAATCGCAATGCGA-TTACGTAAA
29387 TCGCAA
1 TCGCAA
29393 CGAGATTCTG
Statistics
Matches: 186, Mismatches: 17, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 26 0.14
40 47 0.25
41 113 0.61
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (40 bp):
TCGCAATGCGAATACGTAAATCGCAATGCGATTACGTAAA
Found at i:29276 original size:20 final size:20
Alignment explanation
Indices: 29102--29391 Score: 266
Period size: 20 Copynumber: 14.3 Consensus size: 20
29092 GATTCTGACT
* **
29102 ATCGCATTGCGATTTCCCAA
1 ATCGCATTGCGATTTACGTA
* * *
29122 ATTCGCGTTGCGATTTTCCTA
1 A-TCGCATTGCGATTTACGTA
* *
29143 ATTCGCAATGCGA-ATACGTAA
1 A-TCGCATTGCGATTTACGT-A
* *
29164 ATCACAATGCGA-TTACGTAA
1 ATCGCATTGCGATTTACGT-A
* * * *
29184 ATCGCAATGCGAATTAGGAAA
1 ATCGCATTGCGATTTACG-TA
*
29205 ATCGCAATGCGA-TTACGTAA
1 ATCGCATTGCGATTTACGT-A
* *
29225 ATCGCAATGCGA-ATACGTA
1 ATCGCATTGCGATTTACGTA
29244 ATCGCATTGCGATTTACGTA
1 ATCGCATTGCGATTTACGTA
* *
29264 ATCGCATTGCGATTTTCCTA
1 ATCGCATTGCGATTTACGTA
29284 ATTCGCATTGCGATTTACGTA
1 A-TCGCATTGCGATTTACGTA
* * *
29305 ATTGCATTGCGATTTTCCTA
1 ATCGCATTGCGATTTACGTA
29325 ATTCGCATTGCGATTTACGTA
1 A-TCGCATTGCGATTTACGTA
29346 ATCGCATTGCGATTTACGTA
1 ATCGCATTGCGATTTACGTA
29366 ATCGCATTGCGATTTA-GTAA
1 ATCGCATTGCGATTTACGT-A
29386 ATCGCA
1 ATCGCA
29392 ACGAGATTCT
Statistics
Matches: 233, Mismatches: 28, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
19 14 0.06
20 138 0.59
21 81 0.35
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (20 bp):
ATCGCATTGCGATTTACGTA
Found at i:29314 original size:61 final size:60
Alignment explanation
Indices: 29102--29391 Score: 266
Period size: 61 Copynumber: 4.8 Consensus size: 60
29092 GATTCTGACT
* ** * * * * *
29102 ATCGCATTGCGATTTCCCAAATTCGCGTTGCGATTTTCCTAATTCGCAATGCGA-ATACGTAA
1 ATCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACGT-A
* * * * * * *
29164 ATCACAATGCGA-TTACGTAAATCGCAATGCGAATTAGGAAAATCGCAATGCGA-TTACGTAA
1 ATCGCATTGCGATTTACGT-AATCGCATTGCGATTTACG-TAATCGCATTGCGATTTACGT-A
* * * *
29225 ATCGCAATGCGA-ATACGTAATCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCTA
1 ATCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTA
* * *
29284 ATTCGCATTGCGATTTACGTAATTGCATTGCGATTTTCCTAATTCGCATTGCGATTTACGTA
1 A-TCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACGTA
29346 ATCGCATTGCGATTTACGTAATCGCATTGCGATTTA-GTAAATCGCA
1 ATCGCATTGCGATTTACGTAATCGCATTGCGATTTACGT-AATCGCA
29392 ACGAGATTCT
Statistics
Matches: 189, Mismatches: 32, Indels: 16
0.80 0.14 0.07
Matches are distributed among these distances:
59 14 0.07
60 36 0.19
61 107 0.57
62 32 0.17
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (60 bp):
ATCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTAATCGCATTGCGATTTACGTA
Found at i:32859 original size:19 final size:20
Alignment explanation
Indices: 32778--32860 Score: 64
Period size: 20 Copynumber: 4.2 Consensus size: 20
32768 GGCATTCATT
*
32778 TGACTATCGCAACACGGAAA
1 TGACTATCGCAACGCGGAAA
* **
32798 TGACGT-TCGCAATCATC-TTAA
1 TGAC-TATCGCAA-C-GCGGAAA
*
32819 TGTCTATCGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
*
32839 TGACTATCGCAATGC-GAAA
1 TGACTATCGCAACGCGGAAA
32858 TGA
1 TGA
32861 AAATCACAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 11
0.71 0.13 0.16
Matches are distributed among these distances:
19 8 0.16
20 27 0.55
21 13 0.27
22 1 0.02
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (20 bp):
TGACTATCGCAACGCGGAAA
Found at i:32886 original size:33 final size:33
Alignment explanation
Indices: 32844--32979 Score: 245
Period size: 33 Copynumber: 4.1 Consensus size: 33
32834 GGAAATGACT
*
32844 ATCGCAATGCGAAATGAAAATCACAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
32877 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
* *
32910 ATCGCAATGCGAAATTAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
32943 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
32976 ATCG
1 ATCG
32980 TTGTGATTTT
Statistics
Matches: 98, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 98 1.00
ACGTcount: A:0.45, C:0.18, G:0.24, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:32900 original size:19 final size:19
Alignment explanation
Indices: 32824--32968 Score: 95
Period size: 19 Copynumber: 8.4 Consensus size: 19
32814 CTTAATGTCT
* **
32824 ATCGCAACGCGGAAATGACT
1 ATCGCAATGC-GAAATGAAA
32844 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
32863 ATCACAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
32877 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
32896 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
*
32910 ATCGCAATGCGAAATTAAA
1 ATCGCAATGCGAAATGAAA
**
32929 ATCGCAA--CG--A-GGGA
1 ATCGCAATGCGAAATGAAA
32943 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
32962 ATCGCAA
1 ATCGCAA
32969 CGAGAGAATC
Statistics
Matches: 95, Mismatches: 15, Indels: 31
0.67 0.11 0.22
Matches are distributed among these distances:
14 27 0.28
15 3 0.03
16 6 0.06
17 6 0.06
18 3 0.03
19 41 0.43
20 9 0.09
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:33006 original size:19 final size:19
Alignment explanation
Indices: 32978--33054 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
32968 ACGAGAGAAT
*
32978 CGTTGTGATTTT-AGTTTCG
1 CGTTGCGATTTTCA-TTTCG
32997 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
33016 CGTTGCGA--TTC---TCT
1 CGTTGCGATTTTCATTTCG
33030 CGTTGCGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
*
33049 CATTGC
1 CGTTGC
33055 AATAGTCATT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
14 10 0.21
16 3 0.06
17 3 0.06
19 31 0.65
20 1 0.02
ACGTcount: A:0.10, C:0.21, G:0.22, T:0.47
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:33183 original size:14 final size:14
Alignment explanation
Indices: 33164--33200 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
33154 CATCAATTAA
33164 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
33178 ACAAATCATCTTTT
1 ACAAATCAACTTTT
33192 ACAAATCAA
1 ACAAATCAA
33201 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:34616 original size:21 final size:21
Alignment explanation
Indices: 34550--34619 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
34540 GTGAATCGGG
*
34550 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
34570 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
34592 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
34613 CTCTTGA
1 CTCTTGA
34620 GGAATGATAG
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
21 33 0.94
22 2 0.06
ACGTcount: A:0.20, C:0.20, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:34635 original size:42 final size:41
Alignment explanation
Indices: 34550--34672 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 41
34540 GTGAATCGGG
* * * *
34550 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTCTT-GAGGATGACAGGGGC
*
34592 CTCTTGAACGGTGGGAGGGGACTCTTGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTTGAGG-ATGACAGGGGC
* * * *
34634 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGACAGG
1 CTCTTGAACGGTGGGAGGGGACTCTTGA-GGATGACAGG
34673 TGAGTCGGGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.03
42 60 0.88
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTTGAGGATGACAGGGGC
Found at i:35109 original size:19 final size:19
Alignment explanation
Indices: 35093--35175 Score: 86
Period size: 19 Copynumber: 4.6 Consensus size: 19
35083 AAAAATGACT
35093 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
**
35112 ATCGCAACGCGAAAAAAAA
1 ATCGCAACGCGAAATGAAA
*
35131 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
* *
35145 ATCGCAATGCGAAATTAAA
1 ATCGCAACGCGAAATGAAA
35164 ATCGCAACGCGA
1 ATCGCAACGCGA
35176 TTATAGTTTC
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
14 9 0.17
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 37 0.71
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:35206 original size:20 final size:20
Alignment explanation
Indices: 35181--35258 Score: 138
Period size: 20 Copynumber: 3.9 Consensus size: 20
35171 CGCGATTATA
35181 GTTTCGCGTTGCGATTTTTG
1 GTTTCGCGTTGCGATTTTTG
35201 GTTTCGCGTTGCGATTTTTG
1 GTTTCGCGTTGCGATTTTTG
* *
35221 GTTTCGCATTGTGATTTTTG
1 GTTTCGCGTTGCGATTTTTG
35241 GTTTCGCGTTGCGATTTT
1 GTTTCGCGTTGCGATTTT
35259 CATTCTCTCG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.06, C:0.14, G:0.28, T:0.51
Consensus pattern (20 bp):
GTTTCGCGTTGCGATTTTTG
Found at i:35277 original size:40 final size:40
Alignment explanation
Indices: 35182--35278 Score: 133
Period size: 40 Copynumber: 2.4 Consensus size: 40
35172 GCGATTATAG
**
35182 TTTCGCGTTGCGATTTTTGGTTTCGCGTTGCGATTTTTGG
1 TTTCGCGTTGCGATTTTTGGTTTCGCGTTGCGATTTTTCA
* *
35222 TTTCGCATTGTGATTTTTGGTTTCGCGTTGCGA-TTTTCA
1 TTTCGCGTTGCGATTTTTGGTTTCGCGTTGCGATTTTTCA
*
35261 TTCTCTCGTTGCGATTTT
1 TT-TCGCGTTGCGATTTT
35279 CATTTCAACC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
39 6 0.12
40 43 0.88
ACGTcount: A:0.07, C:0.16, G:0.25, T:0.52
Consensus pattern (40 bp):
TTTCGCGTTGCGATTTTTGGTTTCGCGTTGCGATTTTTCA
Found at i:35474 original size:94 final size:94
Alignment explanation
Indices: 35372--35747 Score: 613
Period size: 94 Copynumber: 4.1 Consensus size: 94
35362 ATGGATTGCA
* *
35372 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
* *
35436 TTAGAAGAATTGGCAGCAAACGAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAATAAAT
35465 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
* *
35530 TTAGCAGAATTGACAGCAACCGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAATAAAT
*
35559 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACATAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
35624 TTAGCAGAATTGGCAGCAACCGAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAATAAAT
35653 TTAC-TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAATA-AAT----A
1 TTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAA-AGAATACACA
*
35712 GTTTAGCAGTATTGGCAGCAACCGAATAAAT
64 GTTTAGCAGAATTGGCAGCAACCGAATAAAT
35743 TTACT
1 TTACT
35748 AAGCAATCTA
Statistics
Matches: 269, Mismatches: 10, Indels: 10
0.93 0.03 0.03
Matches are distributed among these distances:
90 35 0.13
93 23 0.09
94 210 0.78
95 1 0.00
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (94 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
TTAGCAGAATTGGCAGCAACCGAATAAAT
Found at i:37537 original size:19 final size:19
Alignment explanation
Indices: 37439--37529 Score: 128
Period size: 19 Copynumber: 4.7 Consensus size: 19
37429 TCTTTTGGTT
*
37439 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
37458 GAGAATGAAAATCACAACGC
1 GA-AATGAAAATCGCAACGC
**
37478 AGAAATGACTATCGCAACGC
1 -GAAATGAAAATCGCAACGC
37498 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
37517 GAAATGAAAATCG
1 GAAATGAAAATCG
37530 TAATGCGATT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
19 32 0.51
20 29 0.46
21 2 0.03
ACGTcount: A:0.48, C:0.19, G:0.21, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:37558 original size:20 final size:20
Alignment explanation
Indices: 37533--37586 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
37523 AAAATCGTAA
** *
37533 TGCGATTTTTGGTTTTGCGT
1 TGCGATTTTTCATTTCGCGT
37553 TGCGA-TTTTCATTTCGCGT
1 TGCGATTTTTCATTTCGCGT
37572 TGCGA-TTTTCATTTC
1 TGCGATTTTTCATTTC
37587 TCTCGTTGCC
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 26 0.84
20 5 0.16
ACGTcount: A:0.09, C:0.17, G:0.22, T:0.52
Consensus pattern (20 bp):
TGCGATTTTTCATTTCGCGT
Found at i:37571 original size:19 final size:20
Alignment explanation
Indices: 37545--37641 Score: 99
Period size: 20 Copynumber: 4.9 Consensus size: 20
37535 CGATTTTTGG
37545 TTTT-GCGTTGCGATTTTCA
1 TTTTCGCGTTGCGATTTTCA
37564 -TTTCGCGTTGCGATTTTCA
1 TTTTCGCGTTGCGATTTTCA
* * **
37583 TTTCTCTCGTTGCCATAGTCA
1 TTT-TCGCGTTGCGATTTTCA
* *
37604 TTTTTGTGTTGCGATTTTCA
1 TTTTCGCGTTGCGATTTTCA
**
37624 TTTTCATGTTGCGATTTT
1 TTTTCGCGTTGCGATTTT
37642 AAGTTTAGAA
Statistics
Matches: 63, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
18 3 0.05
19 15 0.24
20 29 0.46
21 16 0.25
ACGTcount: A:0.11, C:0.18, G:0.19, T:0.53
Consensus pattern (20 bp):
TTTTCGCGTTGCGATTTTCA
Found at i:38207 original size:20 final size:20
Alignment explanation
Indices: 38184--38273 Score: 126
Period size: 20 Copynumber: 4.5 Consensus size: 20
38174 CGATAGTCAG
*
38184 ATTCGCATTGCGATTTATGT
1 ATTCGCATTGCGATTTACGT
* *
38204 ATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGT
38224 AATTCGCATTGCGATTTACGT
1 -ATTCGCATTGCGATTTACGT
* *
38245 AATCGCGTTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
38265 ATTCGCATT
1 ATTCGCATT
38274 ACGAATTAGG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
20 42 0.70
21 18 0.30
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:38229 original size:41 final size:40
Alignment explanation
Indices: 38184--38273 Score: 126
Period size: 41 Copynumber: 2.2 Consensus size: 40
38174 CGATAGTCAG
* * *
38184 ATTCGCATTGCGATTTATGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
* *
38224 AATTCGCATTGCGATTTACGTAATCGCGTTGCGATTTACGT
1 -ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
38265 ATTCGCATT
1 ATTCGCATT
38274 ACGAATTAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 9 0.20
41 35 0.80
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (40 bp):
ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACCT
Found at i:38299 original size:21 final size:21
Alignment explanation
Indices: 38275--38319 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
38265 ATTCGCATTA
38275 CGAATTAGGAAAATCGCAACG
1 CGAATTAGGAAAATCGCAACG
* * *
38296 CGAATTTGGGAAATCGCAATG
1 CGAATTAGGAAAATCGCAACG
38317 CGA
1 CGA
38320 TAATCAGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.18
Consensus pattern (21 bp):
CGAATTAGGAAAATCGCAACG
Found at i:38511 original size:3 final size:3
Alignment explanation
Indices: 38505--38576 Score: 126
Period size: 3 Copynumber: 24.0 Consensus size: 3
38495 TATTAAAATA
38505 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
38553 TAT TAT TAT CAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
38577 GTGTTTGACT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 65 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:51305 original size:18 final size:18
Alignment explanation
Indices: 51282--51318 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
51272 TTTCAAGGTC
51282 GCAATCAGGACTATAAAT
1 GCAATCAGGACTATAAAT
51300 GCAATCAGGACTATAAAT
1 GCAATCAGGACTATAAAT
51318 G
1 G
51319 AGATGGGTCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.16, G:0.19, T:0.22
Consensus pattern (18 bp):
GCAATCAGGACTATAAAT
Found at i:57990 original size:53 final size:53
Alignment explanation
Indices: 57928--58032 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
57918 GTACTTAGGA
* * *
57928 CACTATGTGTG-TATCCATGGTATTCATAATGAGTTTGTGAATTACTATTTCGG
1 CACTATGTGTGCT-CCCATAGTATTCATAATGAGTTTGTGAATTACCATTTCGG
57981 CACTATGTGTGCTCCCATAGTATTCATAATGAGTTTGTGAATTACCATTTCG
1 CACTATGTGTGCTCCCATAGTATTCATAATGAGTTTGTGAATTACCATTTCG
58033 TTACCTTAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
53 47 0.98
54 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (53 bp):
CACTATGTGTGCTCCCATAGTATTCATAATGAGTTTGTGAATTACCATTTCGG
Found at i:64808 original size:14 final size:14
Alignment explanation
Indices: 64789--64818 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
64779 ACAAGAGGAA
64789 AATGATATTATTAT
1 AATGATATTATTAT
64803 AATGATATTATTAT
1 AATGATATTATTAT
64817 AA
1 AA
64819 AAATATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.07, T:0.47
Consensus pattern (14 bp):
AATGATATTATTAT
Found at i:64841 original size:17 final size:17
Alignment explanation
Indices: 64809--64840 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
64799 TTATAATGAT
64809 ATTATTATAAAAATATA
1 ATTATTATAAAAATATA
64826 ATTATT-T-AAAATATA
1 ATTATTATAAAAATATA
64841 TCTAAGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.53
16 1 0.07
17 6 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTATTATAAAAATATA
Found at i:71211 original size:46 final size:47
Alignment explanation
Indices: 71149--71276 Score: 168
Period size: 54 Copynumber: 2.6 Consensus size: 47
71139 TATATATAGA
71149 GGCAAAAGGGGACGGCAACCAATATATATATAT-AGAGAGAGAGAGG
1 GGCAAAAGGGGACGGCAACCAATATATATATATAAGAGAGAGAGAGG
71195 GGCAAAAGGGGACGGCAACCTATTTATATATATATATAGAGAGAGAGAGAGAGG
1 GGCAAAAGGGGACGGCAACC-A---ATATATATATAT--A-AGAGAGAGAGAGG
**
71249 GGCAAAAGGGGACGATAACCAATATATA
1 GGCAAAAGGGGACGGCAACCAATATATA
71277 GAGAGAGAGA
Statistics
Matches: 72, Mismatches: 2, Indels: 12
0.84 0.02 0.14
Matches are distributed among these distances:
46 20 0.28
47 1 0.01
50 19 0.26
53 1 0.01
54 31 0.43
ACGTcount: A:0.43, C:0.11, G:0.30, T:0.16
Consensus pattern (47 bp):
GGCAAAAGGGGACGGCAACCAATATATATATATAAGAGAGAGAGAGG
Found at i:81183 original size:14 final size:15
Alignment explanation
Indices: 81159--81187 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81149 TTGACATTTC
81159 ACCTTTGAAAGATAG
1 ACCTTTGAAAGATAG
81174 ACCTTT-AAAGATAG
1 ACCTTTGAAAGATAG
81188 CTAGAAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (15 bp):
ACCTTTGAAAGATAG
Found at i:83242 original size:66 final size:66
Alignment explanation
Indices: 83165--83302 Score: 276
Period size: 66 Copynumber: 2.1 Consensus size: 66
83155 GCCATTATGA
83165 GGTGGAGTTATCTTGGAATCCAGGTCTAAGAAAATTGTTGACAATCTCTGACCTAAGTTAATGGT
1 GGTGGAGTTATCTTGGAATCCAGGTCTAAGAAAATTGTTGACAATCTCTGACCTAAGTTAATGGT
83230 T
66 T
83231 GGTGGAGTTATCTTGGAATCCAGGTCTAAGAAAATTGTTGACAATCTCTGACCTAAGTTAATGGT
1 GGTGGAGTTATCTTGGAATCCAGGTCTAAGAAAATTGTTGACAATCTCTGACCTAAGTTAATGGT
83296 T
66 T
83297 GGTGGA
1 GGTGGA
83303 TACTTGAAAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 72 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (66 bp):
GGTGGAGTTATCTTGGAATCCAGGTCTAAGAAAATTGTTGACAATCTCTGACCTAAGTTAATGGT
T
Found at i:85901 original size:23 final size:24
Alignment explanation
Indices: 85875--85919 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
85865 ACTCATACCC
*
85875 TAACTCTATTTTAATT-ATATTTG
1 TAACTCTATTTCAATTCATATTTG
*
85898 TAACTTTATTTCAATTCATATT
1 TAACTCTATTTCAATTCATATT
85920 ATTCCCTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.31, C:0.11, G:0.02, T:0.56
Consensus pattern (24 bp):
TAACTCTATTTCAATTCATATTTG
Found at i:94192 original size:12 final size:12
Alignment explanation
Indices: 94172--94216 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
94162 TAACATTCGA
94172 CACTGTTCATTG
1 CACTGTTCATTG
*
94184 CATTGTTCATT-
1 CACTGTTCATTG
*
94195 -ACTGTTCATGG
1 CACTGTTCATTG
94206 CACTGTTCATT
1 CACTGTTCATT
94217 TCTGTTCATC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
10 8 0.30
12 19 0.70
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.44
Consensus pattern (12 bp):
CACTGTTCATTG
Found at i:94198 original size:22 final size:22
Alignment explanation
Indices: 94173--94225 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
94163 AACATTCGAC
* *
94173 ACTGTTCATTGCATTGTTCATT
1 ACTGTTCATGGCACTGTTCATT
94195 ACTGTTCATGGCACTGTTCATT
1 ACTGTTCATGGCACTGTTCATT
*
94217 TCTGTTCAT
1 ACTGTTCAT
94226 CATACTGTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (22 bp):
ACTGTTCATGGCACTGTTCATT
Found at i:94215 original size:34 final size:33
Alignment explanation
Indices: 94172--94237 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 33
94162 TAACATTCGA
94172 CACTGTTCATTGCATTGTTCAT-TACTGTTCATGG
1 CACTGTTCATTGC--TGTTCATATACTGTTCATGG
*
94206 CACTGTTCATTTCTGTTCATCATACTGTTCAT
1 CACTGTTCATTGCTGTTCAT-ATACTGTTCAT
94238 ACCGTATTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
32 7 0.24
34 22 0.76
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.45
Consensus pattern (33 bp):
CACTGTTCATTGCTGTTCATATACTGTTCATGG
Found at i:94232 original size:22 final size:22
Alignment explanation
Indices: 94173--94237 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 22
94163 AACATTCGAC
** *
94173 ACTGTTCATTGCATTGTTCATT
1 ACTGTTCATCACACTGTTCATT
**
94195 ACTGTTCATGGCACTGTTCATT
1 ACTGTTCATCACACTGTTCATT
* *
94217 TCTGTTCATCATACTGTTCAT
1 ACTGTTCATCACACTGTTCAT
94238 ACCGTATTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.18, C:0.22, G:0.14, T:0.46
Consensus pattern (22 bp):
ACTGTTCATCACACTGTTCATT
Found at i:106090 original size:27 final size:27
Alignment explanation
Indices: 106059--106126 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
106049 TCTATTTACA
106059 AAATCATATCTCTATAGGAATTGTAAC
1 AAATCATATCTCTATAGGAATTGTAAC
*
106086 AAATCATGTCTCTATAGGAATTGTAAC
1 AAATCATATCTCTATAGGAATTGTAAC
106113 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
106127 ATTCCTACAC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 8 0.21
27 31 0.79
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATTGTAAC
Found at i:109852 original size:27 final size:27
Alignment explanation
Indices: 109821--109888 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
109811 TCTATTTACA
109821 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
109848 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
109875 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
109889 ATTCCTACAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 9 0.22
27 32 0.78
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:113129 original size:37 final size:36
Alignment explanation
Indices: 113087--113186 Score: 128
Period size: 36 Copynumber: 2.8 Consensus size: 36
113077 ATCGAAGTTC
** *
113087 GATAGAGGATATATATTTTTCGGGTCGGATTAGATCA
1 GATAGAGGATATA-AAATTTCGGGTCGAATTAGATCA
* * *
113124 TATAGAGGACATAAAATTTCAGGTCGAATTAGATCA
1 GATAGAGGATATAAAATTTCGGGTCGAATTAGATCA
*
113160 GGTAGAGGATATAAAATTTCGGGTCGA
1 GATAGAGGATATAAAATTTCGGGTCGA
113187 GTTAAGTTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
36 42 0.79
37 11 0.21
ACGTcount: A:0.35, C:0.09, G:0.26, T:0.30
Consensus pattern (36 bp):
GATAGAGGATATAAAATTTCGGGTCGAATTAGATCA
Found at i:114306 original size:21 final size:21
Alignment explanation
Indices: 114282--114321 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
114272 GTTAAGGGGA
*
114282 CGAACTTGAGCTTATAAAAGG
1 CGAACTTGAACTTATAAAAGG
114303 CGAACTTGAACTTATAAAA
1 CGAACTTGAACTTATAAAA
114322 CTCTAGGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.25
Consensus pattern (21 bp):
CGAACTTGAACTTATAAAAGG
Found at i:120051 original size:14 final size:14
Alignment explanation
Indices: 120032--120073 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
120022 CTAATTTATA
120032 TACATGTATGGATG
1 TACATGTATGGATG
120046 TACATGTATGGATG
1 TACATGTATGGATG
*
120060 TACAAGTATGGATG
1 TACATGTATGGATG
120074 CATGAATTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.33
Consensus pattern (14 bp):
TACATGTATGGATG
Found at i:120898 original size:20 final size:20
Alignment explanation
Indices: 120830--120904 Score: 69
Period size: 21 Copynumber: 3.6 Consensus size: 20
120820 CATTATACCA
**
120830 AAGGGATCAATCCTTTTTGGG
1 AAGGGATCAATCC-TTTTGTC
** *
120851 AAGGGATTGATCCTTTTCCTC
1 AAGGGATCAATCCTTTT-GTC
*
120872 GAGGGATCAATCCTTTTGTC
1 AAGGGATCAATCCTTTTGTC
*
120892 AAGGGATCGATCC
1 AAGGGATCAATCC
120905 CAAACTCACT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
20 17 0.40
21 25 0.60
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (20 bp):
AAGGGATCAATCCTTTTGTC
Found at i:122244 original size:20 final size:20
Alignment explanation
Indices: 122206--122255 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
122196 GCTCAAAATC
*
122206 GTTTTTCAAAATTTCATTTT
1 GTTTTTCAAAATTCCATTTT
122226 GTTTTTCAAAA-TCCAATTTT
1 GTTTTTCAAAATTCC-ATTTT
*
122246 G-CTTTCAAAA
1 GTTTTTCAAAA
122256 GAAAATCGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.30, C:0.14, G:0.06, T:0.50
Consensus pattern (20 bp):
GTTTTTCAAAATTCCATTTT
Found at i:123446 original size:21 final size:21
Alignment explanation
Indices: 123420--123497 Score: 72
Period size: 21 Copynumber: 3.8 Consensus size: 21
123410 TTTAAGGCAC
123420 AAGGGATCGATCCTTTTACCA
1 AAGGGATCGATCCTTTTACCA
*
123441 AAGGGATCGATCATTTT--CA
1 AAGGGATCGATCCTTTTACCA
**** *
123460 AATATTTCGA-CCGTTATACCA
1 AAGGGATCGATCC-TTTTACCA
123481 AAGGGATCGATCCTTTT
1 AAGGGATCGATCCTTTT
123498 TTGGGATGGG
Statistics
Matches: 41, Mismatches: 12, Indels: 8
0.67 0.20 0.13
Matches are distributed among these distances:
18 1 0.02
19 11 0.27
21 27 0.66
22 2 0.05
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (21 bp):
AAGGGATCGATCCTTTTACCA
Found at i:125560 original size:16 final size:16
Alignment explanation
Indices: 125525--125585 Score: 79
Period size: 16 Copynumber: 3.9 Consensus size: 16
125515 TTGTTTACTT
**
125525 CTGAATGATT-AAGCG
1 CTGAATGATTCAAATG
125540 CTGAATGATTCAAATG
1 CTGAATGATTCAAATG
125556 CTGAATGATTCAAATG
1 CTGAATGATTCAAATG
* *
125572 TTGAATAATTCAAA
1 CTGAATGATTCAAA
125586 GGCTCTGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
15 10 0.24
16 31 0.76
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.31
Consensus pattern (16 bp):
CTGAATGATTCAAATG
Found at i:125705 original size:15 final size:15
Alignment explanation
Indices: 125685--125722 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
125675 CACTGTTTTG
125685 CTGAATCAGTTAGCA
1 CTGAATCAGTTAGCA
125700 CTGAATCAGTTAGCA
1 CTGAATCAGTTAGCA
125715 CTGAATCA
1 CTGAATCA
125723 TTCAGAGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.26
Consensus pattern (15 bp):
CTGAATCAGTTAGCA
Found at i:131273 original size:19 final size:19
Alignment explanation
Indices: 131249--131298 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
131239 TTCTGAGCTG
131249 GGGTATCGATACTCACCCT
1 GGGTATCGATACTCACCCT
131268 GGGTATCGATACTCACCCT
1 GGGTATCGATACTCACCCT
131287 GGGTATCGATAC
1 GGGTATCGATAC
131299 CAAAATGAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.26
Consensus pattern (19 bp):
GGGTATCGATACTCACCCT
Found at i:134007 original size:21 final size:21
Alignment explanation
Indices: 133981--134030 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 21
133971 AAAGATATTA
*
133981 AAATAATAAAAGCGATTAAA-T
1 AAATAATAAAA-CAATTAAAGT
134002 AAAT-A-AAAACAATTAAAGT
1 AAATAATAAAACAATTAAAGT
134021 AAA-AATAAAA
1 AAATAATAAAA
134031 AGATGAAGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 7 0.28
19 9 0.36
20 5 0.20
21 4 0.16
ACGTcount: A:0.70, C:0.04, G:0.06, T:0.20
Consensus pattern (21 bp):
AAATAATAAAACAATTAAAGT
Found at i:134016 original size:18 final size:18
Alignment explanation
Indices: 133981--134023 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
133971 AAAGATATTA
* *
133981 AAAT-AATAAAAGCGATT
1 AAATAAATAAAAACAATT
133998 AAATAAATAAAAACAATT
1 AAATAAATAAAAACAATT
134016 AAAGTAAA
1 AAA-TAAA
134024 AATAAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 4 0.18
18 14 0.64
19 4 0.18
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (18 bp):
AAATAAATAAAAACAATT
Found at i:138681 original size:13 final size:12
Alignment explanation
Indices: 138661--138695 Score: 61
Period size: 13 Copynumber: 2.8 Consensus size: 12
138651 TGATTGATTG
138661 AATAAAAATAAA
1 AATAAAAATAAA
138673 AAGTAAAAATAAA
1 AA-TAAAAATAAA
138686 AATAAAAATA
1 AATAAAAATA
138696 TAACGGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (12 bp):
AATAAAAATAAA
Found at i:138686 original size:5 final size:6
Alignment explanation
Indices: 138661--138695 Score: 61
Period size: 6 Copynumber: 5.7 Consensus size: 6
138651 TGATTGATTG
138661 AATAAA AATAAA AAGTAAA AATAAA AATAAA AATA
1 AATAAA AATAAA AA-TAAA AATAAA AATAAA AATA
138696 TAACGGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 22 0.79
7 6 0.21
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AATAAA
Found at i:144183 original size:18 final size:19
Alignment explanation
Indices: 144162--144208 Score: 71
Period size: 18 Copynumber: 2.6 Consensus size: 19
144152 GTAAAAAGAT
144162 ATTAAAAT-AATAAAAGCA
1 ATTAAAATAAATAAAAGCA
144180 ATT-AAATAAATAAAAGCA
1 ATTAAAATAAATAAAAGCA
*
144198 ATTAAAGTAAA
1 ATTAAAATAAA
144209 AATAAGAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 4 0.15
18 16 0.62
19 6 0.23
ACGTcount: A:0.66, C:0.04, G:0.06, T:0.23
Consensus pattern (19 bp):
ATTAAAATAAATAAAAGCA
Found at i:145518 original size:24 final size:25
Alignment explanation
Indices: 145491--145542 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
145481 TTTTTTAATT
*
145491 TAATTTAATATATA-TATTTATTA-A
1 TAATTAAATATATAGTA-TTATTATA
*
145515 TAATTAAATATGTAGTATTATTATA
1 TAATTAAATATATAGTATTATTATA
145540 TAA
1 TAA
145543 AAAATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 18 0.75
25 6 0.25
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
TAATTAAATATATAGTATTATTATA
Found at i:146442 original size:14 final size:14
Alignment explanation
Indices: 146423--146451 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
146413 GCCACTCTAC
146423 TTTTGGTTTTTCTG
1 TTTTGGTTTTTCTG
146437 TTTTGGTTTTTCTG
1 TTTTGGTTTTTCTG
146451 T
1 T
146452 GTGCACGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.21, T:0.72
Consensus pattern (14 bp):
TTTTGGTTTTTCTG
Found at i:147979 original size:2 final size:2
Alignment explanation
Indices: 147972--148006 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
147962 AATTTTGTAA
147972 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
148007 AATTTTATGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:148227 original size:20 final size:20
Alignment explanation
Indices: 148202--148239 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
148192 ATCCTATTCC
148202 CTGGTAATCTTACATTCCTA
1 CTGGTAATCTTACATTCCTA
148222 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
148240 GTGAACCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCTA
Found at i:149087 original size:242 final size:243
Alignment explanation
Indices: 148631--149118 Score: 741
Period size: 242 Copynumber: 2.0 Consensus size: 243
148621 ATTTTTAGCA
* *
148631 AAAATTTTACTCTTTTTTTCAATTTAGTCTATCAATTTTATATTTTATTCAATTTGATCTTTCAA
1 AAAATTTTACTCTTTTTTTCAATTTAATCTATCAACTTTATATTTTATTCAATTTGATCTTTCAA
** * *
148696 CTGTATTTTTTTACAAATTAATTATTCTTGTCAATTCTTTGACTCATTTATACTCTCATCAATAC
66 CTGTATTTTTTTACAAATTAATTATTCTCATCAATTCTTTAACTCATTTATACTCTAATCAATAC
* *
148761 TTTATCATCAAAATACTCTTTTTAAAAAAATGAAATTATAAATATATTTTATAATTTTAGATAAC
131 TTTATCATCAAAATACTCTTTTCAAAAAAATAAAATTATAAATATATTTTATAATTTTAGATAAC
* *
148826 ATTTGAATTATTAAATAACATTACAATGTGAAAAGGAATATAAAGAAAT
196 ATTTGAATTATTAAATAACATCACAATATGAAAAGGAATATAAA-AAAT
**
148875 AAAATTTTACTC-TTTTTT-AATTTAATCTATCAACTTTATATTTTATTCAATTTGATCTTTTGA
1 AAAATTTTACTCTTTTTTTCAATTTAATCTATCAACTTTATATTTTATTCAATTTGATCTTTCAA
* * * *
148938 CTGTACTTTTTTTATAAATTCATTCTTCTCATCAATTCTTTAACTCCTTTATACTCTAATCAATA
66 CTGTA-TTTTTTTACAAATTAATTATTCTCATCAATTCTTTAACTCATTTATACTCTAATCAATA
* *
149003 TTTTATCATCAAAATACT-TTTTCAACAAAATAAAATTATAAATATATTTTATAATTTTAGATAA
130 CTTTATCATCAAAATACTCTTTTCAAAAAAATAAAATTATAAATATATTTTATAATTTTAGATAA
* *
149067 CATTTG-ATTAATTGAATAACATCATAATATGAAAAGGAATATAAAAAAT
195 CATTTGAATT-ATTAAATAACATCACAATATGAAAAGGAATATAAAAAAT
149116 AAA
1 AAA
149119 TATGTATATA
Statistics
Matches: 222, Mismatches: 20, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
241 10 0.05
242 126 0.57
243 74 0.33
244 12 0.05
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (243 bp):
AAAATTTTACTCTTTTTTTCAATTTAATCTATCAACTTTATATTTTATTCAATTTGATCTTTCAA
CTGTATTTTTTTACAAATTAATTATTCTCATCAATTCTTTAACTCATTTATACTCTAATCAATAC
TTTATCATCAAAATACTCTTTTCAAAAAAATAAAATTATAAATATATTTTATAATTTTAGATAAC
ATTTGAATTATTAAATAACATCACAATATGAAAAGGAATATAAAAAAT
Found at i:149912 original size:153 final size:153
Alignment explanation
Indices: 149720--150177 Score: 853
Period size: 153 Copynumber: 3.0 Consensus size: 153
149710 GAGGCATGGC
*
149720 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCAATATTTTTGTGCATGTAGCCGACG
1 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
* * *
149785 TAAGCAAGAAAGCAAGGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAAC
66 TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
149850 ATGCATATGGAGTGGGGATTGGA
131 ATGCATATGGAGTGGGGATTGGA
149873 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
1 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
* *
149938 TGAGCAAGAAAGCAATGTTTGTGTCCTATCGTATATCCTAAGAATTAGTACGTAGCCATGACAGC
66 TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
150003 ATGCATATGGAGTGGGGATTGGA
131 ATGCATATGGAGTGGGGATTGGA
150026 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
1 GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
*
150091 TGAGCAAGAAAGCAATGTTTGTGTCCCATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
66 TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
150156 ATGCATATGGAGTGGGGATTGG
131 ATGCATATGGAGTGGGGATTGG
150178 GATGGACATG
Statistics
Matches: 296, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
153 296 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (153 bp):
GTGTTCCACCACTTCTATGAATGTCACATTAGTTTCTCTCTATATTTTTGTGCATGTAGCCGACG
TGAGCAAGAAAGCAATGTTTGTGTCCTATTGTATATCCTAGGAATTAGTACGTAGCCATGACAGC
ATGCATATGGAGTGGGGATTGGA
Found at i:150775 original size:4 final size:4
Alignment explanation
Indices: 150768--151716 Score: 1489
Period size: 4 Copynumber: 243.2 Consensus size: 4
150758 TTACTTGATT
150768 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
150816 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
150864 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
150912 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
150960 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
151008 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
151056 TGTA TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA TGTA TGTA T-TC
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
151101 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
151149 TGTA TGTA TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
151195 TGTA TGTG TGTTA TGTA TGTA TGTA TGT- TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TG-TA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * *
151243 TGTA TGTA TGTA TGTA TGTA TGTG TATA TGTA TGTA TGTA TGGA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
151291 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
151339 TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA --TA TGTA TGTA TATA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * * * *
151383 TGTA TGTG TGTT TATG TGTA AGTA -GTG TGTA TG-- TGTC TGTA TG--
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * *
151426 TGTG TGTG TGTA TGTG TGTG TGTA TG-- TGTA TGTA TGTG TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* * * * *
151472 TATA TGTA TGTA -GTA TGTA TGTC TGTA TGTA TGTG GGTA TGTG TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
* *
151519 TGTA TGTA TGTA TGTA TGTA --TA TGTA TATA TATA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
151565 TGTA TGTA TGTA TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
151611 TGTA TGTA -GTA TGTA TGTA TGTA TGTA --TA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
151656 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
151704 TGTA TGTA TGTA T
1 TGTA TGTA TGTA T
151717 CTGTAT
Statistics
Matches: 880, Mismatches: 39, Indels: 52
0.91 0.04 0.05
Matches are distributed among these distances:
2 20 0.02
3 13 0.01
4 844 0.96
5 3 0.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (4 bp):
TGTA
Done.