genome.fa.s9342.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009342.1 Hibiscus syriacus cultivar Beakdansim tig00113122_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69350

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13343--13816	90	5.3	90	91	0	750	34	20	17	27	1.95
13787--13853	20	3.3	20	68	12	55	32	16	26	23	1.96
13855--13922	22	3.2	21	66	16	50	30	25	19	25	1.98
13799--13950	42	3.6	42	87	2	182	30	21	23	25	1.99
13840--13900	20	3.0	19	66	15	50	31	22	22	22	1.99
13849--13917	23	3.2	23	63	23	58	33	21	21	23	1.97
13982--14220	43	5.6	43	92	0	379	29	29	14	26	1.95
13982--14226	86	2.8	86	94	0	427	30	29	14	25	1.95
16319--16423	54	2.0	55	80	12	125	24	22	12	40	1.89
16873--17018	52	2.8	52	90	1	222	21	23	17	37	1.94
18174--18252	10	7.7	10	71	20	56	1	18	2	77	0.96
18186--18245	20	3.1	18	82	15	68	0	20	1	78	0.84
18187--18266	11	7.2	11	79	14	85	0	20	2	77	0.88
18187--18266	32	2.4	33	86	12	110	0	20	2	77	0.88
32024--32181	21	7.8	20	72	7	86	38	24	17	18	1.93
32149--32397	20	12.4	20	82	5	252	36	25	18	20	1.94
33691--33924	72	3.3	72	81	8	295	46	17	22	13	1.83
33677--33946	53	5.1	52	90	8	415	46	17	22	13	1.83
33658--33951	72	4.2	68	78	13	276	45	18	22	13	1.85
33677--33946	105	2.6	105	91	7	426	46	17	22	13	1.83
33923--34038	53	2.2	52	86	3	160	18	23	18	38	1.93
33961--34048	19	4.8	19	82	14	123	13	22	15	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34138--34174	14	2.6	14	91	0	65	45	21	0	32	1.52
36097--36255	19	8.6	19	81	7	166	45	23	18	11	1.83
36097--36250	52	2.8	55	86	5	188	46	23	18	11	1.81
36267--36325	14	3.9	14	76	20	64	6	16	28	47	1.72
36251--36374	33	3.7	33	91	1	185	8	17	27	45	1.78
36251--36342	19	5.4	18	72	24	83	7	17	28	46	1.75
36300--36356	14	3.7	14	72	20	51	8	22	24	43	1.81
36472--36784	93	3.4	93	96	2	596	45	18	13	22	1.85
38470--38533	20	3.2	20	82	4	92	46	15	25	12	1.81
38468--38532	21	3.1	21	82	4	96	47	15	26	10	1.78
38573--38629	14	3.7	14	75	20	60	8	24	22	43	1.81
38557--38635	33	2.4	33	93	2	133	8	21	22	46	1.79
38584--38689	21	5.6	20	74	17	93	13	21	18	46	1.83
38769--38839	33	2.2	33	92	0	115	47	15	23	12	1.80
39218--39409	20	9.6	20	84	5	226	19	18	26	34	1.95
40113--40171	24	2.5	23	88	2	91	6	8	22	62	1.47
42196--42261	22	2.9	23	76	17	66	24	1	15	59	1.45
42527--42582	27	2.1	27	96	0	103	35	7	19	37	1.79
42826--42901	36	2.1	36	87	2	107	48	1	2	47	1.24
43041--43077	20	1.9	19	89	10	58	18	21	10	48	1.78
43515--43566	21	2.5	21	81	3	61	38	19	25	17	1.93
43555--43608	20	2.7	20	97	0	99	31	24	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43617--43669	20	2.7	20	87	0	70	26	26	18	28	1.98
43552--43668	61	1.9	61	82	0	144	34	23	17	24	1.96
44155--44221	19	3.5	19	85	2	89	47	25	16	10	1.78
44217--44398	19	10.1	19	73	14	136	12	21	22	42	1.87
44217--44398	33	5.1	37	76	16	141	12	21	22	42	1.87
46392--46514	42	2.9	42	80	2	122	22	36	17	22	1.95
46448--46514	21	3.2	21	66	6	55	23	35	20	19	1.95
47862--47898	14	2.6	14	88	12	58	29	0	21	48	1.50
48057--48187	19	7.7	19	66	23	85	15	22	18	43	1.87
48061--48187	33	3.9	32	84	8	175	15	22	18	43	1.88
48054--48186	66	2.0	66	94	0	230	17	22	18	42	1.89
49360--49414	28	2.0	28	93	6	96	20	21	18	40	1.92
50499--50523	12	2.1	12	100	0	50	0	28	0	72	0.86
50698--50751	24	2.2	24	86	0	72	38	18	16	25	1.92
51801--51838	20	1.9	20	94	0	67	39	23	21	15	1.92
51857--51943	19	4.8	19	84	9	121	16	21	14	47	1.82
51857--51972	33	3.4	33	80	11	133	15	22	18	43	1.87
52060--52096	14	2.6	14	86	0	56	48	21	0	29	1.50
53950--54016	19	3.5	19	83	4	89	37	23	23	14	1.93
54005--54062	14	3.9	14	79	16	71	48	25	17	8	1.75
53989--54067	32	2.4	33	95	2	142	46	24	18	10	1.80
54074--54168	18	5.7	18	75	20	107	13	20	21	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54098--54152	14	3.6	14	77	17	65	10	16	23	49	1.77
54079--54168	32	2.8	32	98	1	171	13	18	21	46	1.83
54684--54728	18	2.5	18	88	0	72	13	15	44	26	1.83
55842--55884	20	2.2	20	95	0	77	53	18	18	9	1.70
56163--56206	22	2.0	22	95	0	79	18	15	45	20	1.85
56374--56488	20	5.7	20	78	5	88	23	17	22	36	1.95
56477--56569	20	4.5	21	78	4	100	17	24	18	39	1.91
56416--56550	41	3.3	41	82	4	139	19	21	20	38	1.94
56477--56569	41	2.3	41	100	0	186	17	24	18	39	1.91
57244--57398	20	7.8	20	73	14	90	32	27	16	23	1.95
57299--57412	41	2.8	39	77	12	106	33	23	16	26	1.96
57344--57448	20	5.3	20	76	15	110	39	21	18	20	1.93
57574--57624	22	2.3	22	93	0	84	21	41	13	23	1.89
59510--59557	21	2.3	21	92	0	78	16	16	29	37	1.91
59782--59827	4	11.5	4	80	0	56	28	2	2	67	1.14
59977--60062	21	4.1	21	70	5	66	25	36	16	22	1.94
61482--61521	14	2.9	14	80	0	53	30	0	17	52	1.45
61431--61572	67	2.2	64	82	9	166	30	1	16	50	1.54
61631--61668	20	1.9	20	88	0	58	47	26	13	13	1.79
61889--61971	39	2.1	39	90	0	130	20	15	15	48	1.81
62279--62315	18	2.1	18	89	0	56	51	10	5	32	1.60
62702--62751	25	2.0	25	96	0	91	44	22	8	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62786--62839	20	2.7	20	97	0	99	48	3	24	24	1.67
62917--62993	33	2.3	33	86	4	102	24	23	18	33	1.96
63271--63306	18	2.0	18	94	0	63	16	2	25	55	1.55
65356--65395	3	13.3	3	89	0	62	0	30	0	70	0.88
65357--65395	15	2.6	15	100	0	78	0	28	0	71	0.86
65565--65618	24	2.2	24	86	0	72	38	18	20	22	1.93
66433--66494	27	2.3	27	94	0	106	24	3	30	41	1.70
66528--66593	19	3.5	19	81	6	64	31	13	22	31	1.93
66548--66617	19	3.6	20	83	9	74	25	12	22	38	1.90
66609--66670	21	3.0	21	95	0	106	37	17	22	22	1.94
66683--66736	20	2.7	20	75	11	65	27	14	29	27	1.95

Tables:   1

The End!