genome.fa.s9345.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009345.1 Hibiscus syriacus cultivar Beakdansim tig00113128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61523

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2541--2598	26	2.2	25	88	8	89	29	12	8	50	1.69
3298--3352	24	2.3	24	90	0	83	38	18	20	23	1.93
4396--4487	46	2.0	46	93	0	157	29	13	16	41	1.86
9321--9353	16	2.0	17	88	5	50	39	3	18	39	1.66
14293--14325	16	2.0	17	88	5	50	39	3	18	39	1.66
15655--15695	21	2.0	21	85	0	55	31	14	17	36	1.90
33461--33535	18	4.4	18	77	16	97	18	49	18	13	1.79
33465--33535	31	2.3	31	87	0	115	18	47	19	14	1.82
33514--33557	12	3.3	13	84	12	54	15	40	25	18	1.90
33532--33565	7	4.7	7	85	7	50	17	32	26	23	1.97
33534--33564	15	2.1	15	93	0	53	16	35	22	25	1.94
34853--34887	18	1.9	18	88	0	52	54	0	17	28	1.43
38658--38732	18	4.4	18	77	16	97	18	49	18	13	1.79
38662--38732	31	2.3	31	87	0	115	18	47	19	14	1.82
38711--38754	12	3.3	13	84	12	54	15	40	25	18	1.90
38729--38762	7	4.7	7	85	7	50	17	32	26	23	1.97
38731--38761	15	2.1	15	93	0	53	16	35	22	25	1.94
40049--40083	18	1.9	18	88	0	52	54	0	17	28	1.43
44605--44806	97	2.1	95	84	3	253	41	10	22	25	1.86
45222--45580	45	8.0	45	83	3	409	39	12	22	24	1.89
45252--45580	179	1.8	181	84	1	446	39	13	23	24	1.90
47384--47454	23	2.8	25	83	12	101	33	15	22	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51476--51502	14	1.9	14	100	0	54	62	14	7	14	1.51
53977--54012	18	2.0	18	100	0	72	16	11	38	33	1.84
56252--56310	2	29.5	2	96	0	109	49	0	1	49	1.11
58094--58162	21	3.3	20	70	23	61	47	4	4	43	1.42
57962--58131	88	1.9	88	91	4	281	37	11	7	44	1.67

Tables:   1

The End!