genome.fa.s9346.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009346.1 Hibiscus syriacus cultivar Beakdansim tig00113130_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78950

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5851--5912	30	2.1	29	81	3	70	24	25	4	45	1.73
6986--7051	17	3.8	17	80	6	69	40	15	6	37	1.72
11585--11670	35	2.5	35	80	3	93	39	16	6	37	1.75
11594--11667	17	4.2	18	76	11	73	40	17	6	35	1.76
13160--13227	17	3.9	17	76	5	64	36	5	16	41	1.72
13180--13227	17	2.7	18	87	6	71	33	4	20	41	1.72
13237--13284	17	2.7	18	87	3	62	37	14	14	33	1.87
16050--16221	87	2.0	87	83	4	222	30	18	13	36	1.90
21370--21406	3	12.7	3	94	5	67	67	0	0	32	0.91
30941--31011	27	2.6	27	88	4	90	49	9	0	40	1.36
35710--35785	17	4.5	17	77	6	73	39	14	13	32	1.85
38578--38647	34	2.1	34	91	0	113	44	18	14	22	1.86
40786--41194	20	20.5	20	84	5	486	35	25	18	20	1.95
41867--41913	24	2.0	24	87	8	69	25	14	21	38	1.92
42088--42112	12	2.1	12	100	0	50	72	0	28	0	0.86
44417--44742	19	18.4	19	80	15	405	47	17	20	14	1.82
44417--44742	33	9.2	34	82	13	321	47	17	20	14	1.82
44445--44764	161	2.0	157	93	3	552	46	16	21	14	1.83
44445--44764	52	6.0	52	93	4	550	46	16	21	14	1.83
44771--44872	19	5.6	19	85	12	151	14	23	17	44	1.86
44979--45015	14	2.6	14	91	0	65	45	21	0	32	1.52
45010--45081	12	6.0	12	67	23	53	58	16	1	23	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46880--47014	19	7.6	19	76	16	137	45	24	19	10	1.81
46936--46992	14	3.7	14	77	20	60	45	24	21	8	1.80
46917--47009	33	2.8	33	98	0	177	47	22	20	9	1.79
46880--47014	52	2.5	54	75	18	131	45	24	19	10	1.81
47010--47122	19	6.5	19	74	19	120	7	17	28	46	1.74
47010--47101	33	2.8	33	93	3	150	7	18	28	45	1.76
47010--47137	19	7.3	18	72	19	92	8	17	28	45	1.78
47181--47560	93	4.1	93	98	0	744	46	18	12	22	1.83
47181--47560	185	2.0	186	98	0	744	46	18	12	22	1.83
49261--49350	14	5.7	14	74	23	81	42	23	25	8	1.83
49253--49367	33	3.5	33	95	0	212	45	20	24	9	1.81
49260--49372	19	6.8	18	72	23	88	43	22	24	9	1.83
49384--49438	14	3.6	14	73	21	56	9	27	23	40	1.85
49559--49629	33	2.2	33	92	0	115	47	18	22	11	1.80
49811--49865	22	2.5	22	81	0	74	20	16	40	23	1.91
50011--50204	20	9.6	20	82	5	221	19	19	25	35	1.95
50011--50204	60	3.2	60	83	0	253	19	19	25	35	1.95
50197--50273	21	3.7	20	70	13	57	27	16	23	32	1.96
50259--50310	20	2.6	20	96	0	95	21	13	26	38	1.90
51335--51368	15	2.3	15	94	0	59	26	23	14	35	1.94
57213--57249	15	2.4	16	86	13	51	32	2	5	59	1.34
57701--57947	130	1.9	129	89	0	386	35	13	14	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58344--58419	35	2.2	35	90	4	118	36	1	22	39	1.63
62763--62800	20	1.9	20	94	0	67	36	18	21	23	1.95
70519--70562	21	2.1	21	91	4	72	45	31	11	11	1.76
76732--76799	18	3.6	18	71	21	59	79	0	16	4	0.89
76725--76804	39	2.0	40	83	11	101	78	0	17	3	0.89
76721--76806	7	11.4	7	73	16	57	79	0	17	3	0.88
76721--76813	47	2.0	48	85	6	127	78	0	16	5	0.93
78062--78248	89	2.1	89	86	4	254	28	20	19	31	1.97
78141--78447	123	2.5	123	82	7	336	31	21	18	29	1.97

Tables:   1

The End!