Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01009349.1 Hibiscus syriacus cultivar Beakdansim tig00113142_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5795
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.26


Found at i:1755 original size:27 final size:27

Alignment explanation


    Indices: 1723--1780  Score: 71
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1713 GTATATTCAT

                     **                
       1723 CATTTATAATGCATCACCAATAAAATG
          1 CATTTATAACACATCACCAATAAAATG

                    *     *        *   
       1750 CATTTATAGCACATTACCAATAATATG
          1 CATTTATAACACATCACCAATAAAATG

                
       1777 CATT
          1 CATT

       1781 CGAATTTAAA


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33


Consensus pattern (27 bp):   
CATTTATAACACATCACCAATAAAATG
Done.