Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009350.1 Hibiscus syriacus cultivar Beakdansim tig00113145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2139524
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 9
Found at i:871759 original size:27 final size:27
Alignment explanation
Indices: 871729--871794 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
871719 AGGCGGGGAT
* *
871729 AAAAGCTAAG-AAAAAGAGCAAAAGAAA
1 AAAAGCAAAGAAAAAAGAAC-AAAGAAA
*
871756 AAAATCAAAGAAAAAAGAACAAAGAAA
1 AAAAGCAAAGAAAAAAGAACAAAGAAA
* *
871783 GAAAGAAAAGAA
1 AAAAGCAAAGAA
871795 GACAAGAAGC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 24 0.75
28 8 0.25
ACGTcount: A:0.74, C:0.06, G:0.17, T:0.03
Consensus pattern (27 bp):
AAAAGCAAAGAAAAAAGAACAAAGAAA
Found at i:871765 original size:13 final size:14
Alignment explanation
Indices: 871739--871789 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
871729 AAAAGCTAAG
*
871739 AAAAAGAGCAAAAGA
1 AAAAAGAAC-AAAGA
*
871754 AAAAA-ATCAAAGA
1 AAAAAGAACAAAGA
871767 AAAAAGAACAAAGA
1 AAAAAGAACAAAGA
871781 AAGAAAGAA
1 AA-AAAGAA
871790 AAGAAGACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 10 0.31
14 11 0.34
15 11 0.34
ACGTcount: A:0.76, C:0.06, G:0.16, T:0.02
Consensus pattern (14 bp):
AAAAAGAACAAAGA
Found at i:872967 original size:36 final size:36
Alignment explanation
Indices: 872926--873008 Score: 114
Period size: 36 Copynumber: 2.3 Consensus size: 36
872916 CGTCTATCTA
* *
872926 GAGACAATTT-TTTGAAAAACAAATTTTGTCTCGCTT
1 GAGACAATTTCTCT-AAAAACAAATTTAGTCTCGCTT
* *
872962 GAGACAATTTCTCTCAAAACAAATTTAGTCTCGTTT
1 GAGACAATTTCTCTAAAAACAAATTTAGTCTCGCTT
872998 GAGACAATTTC
1 GAGACAATTTC
873009 CTTCAGAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 40 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (36 bp):
GAGACAATTTCTCTAAAAACAAATTTAGTCTCGCTT
Found at i:873597 original size:131 final size:132
Alignment explanation
Indices: 873379--873709 Score: 354
Period size: 131 Copynumber: 2.5 Consensus size: 132
873369 TGGTCAATCA
* *
873379 TCCTCATCACGTAGGAACCGTGTCATCC-CTCGACCATACCTCCTCATCACGTAGGAGCCGTGTC
1 TCCTCATCACGTAGGAACCGTGTCATCCACT-GACCAGACCTCCTCATCACGTAGGAGCTGTGTC
* *
873443 A-ACCTCAGATAAATAGACATCCTCATCACATAAGAATCGTGTTAT-CATCCCTAAAG-TTG-GT
65 ACACCTCAGATAAACAGACATCCTCATCACATAAGAACCGTGTTATCCATCCCTAAAGATTGAG-
873504 CTTCTG
129 C--CTG
* *
873510 TCCTTATCACGTAGGAACCGTGTCATCCACTGACCAGACCTCCTTATCACGTAGGAGCTGTGTCA
1 TCCTCATCACGTAGGAACCGTGTCATCCACTGACCAGACCTCCTCATCACGTAGGAGCTGTGTCA
* * * * * * *
873575 CCCCT-AGATAACCA-ACCGTCCTCATCGCGTAGGAACCGTGTTATCACCATTCCTAAAGATTGC
66 CACCTCAGATAAACAGA-CATCCTCATCACATAAGAACCGTGTTAT--CCATCCCTAAAGATTG-
873638 AGCCTG
127 AGCCTG
* * * * * *
873644 TCCTCATCGCGTAGGAACCGTGTCAACCACCGATCAGAACTCCTCATCACGCAGGAG-TCGTGTC
1 TCCTCATCACGTAGGAACCGTGTCATCCACTGACCAGACCTCCTCATCACGTAGGAGCT-GTGTC
873708 AC
65 AC
873710 TCTTAGACGA
Statistics
Matches: 169, Mismatches: 21, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
130 1 0.01
131 88 0.52
132 5 0.03
133 1 0.01
134 69 0.41
135 3 0.02
136 1 0.01
137 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.24
Consensus pattern (132 bp):
TCCTCATCACGTAGGAACCGTGTCATCCACTGACCAGACCTCCTCATCACGTAGGAGCTGTGTCA
CACCTCAGATAAACAGACATCCTCATCACATAAGAACCGTGTTATCCATCCCTAAAGATTGAGCC
TG
Found at i:874689 original size:29 final size:31
Alignment explanation
Indices: 874630--874689 Score: 70
Period size: 32 Copynumber: 2.0 Consensus size: 31
874620 ATACTCAATT
* *
874630 TTATTATAATAATATATTATACTATTATATTC
1 TTATTATAATAATATATAATAC-AATATATTC
*
874662 TTATTTTAATAATATATAATA-AAT-TATT
1 TTATTATAATAATATATAATACAATATATT
874690 AATAAAAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
29 4 0.16
30 2 0.08
32 19 0.76
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (31 bp):
TTATTATAATAATATATAATACAATATATTC
Found at i:883781 original size:8 final size:8
Alignment explanation
Indices: 883763--883854 Score: 69
Period size: 8 Copynumber: 12.4 Consensus size: 8
883753 CCTGAAGAAT
883763 AAAAATG-
1 AAAAATGA
883770 AAAAATG-
1 AAAAATGA
883777 AAAAATGA
1 AAAAATGA
883785 AAAAA-G-
1 AAAAATGA
883791 AAAAA-GA
1 AAAAATGA
883798 AAAAA-G-
1 AAAAATGA
883804 -AAAA-GA
1 AAAAATGA
883810 AATAAA-GAA
1 AA-AAATG-A
883819 AGAAAATGA
1 A-AAAATGA
*
883828 AAAAATAA
1 AAAAATGA
*
883836 AAAAATAA
1 AAAAATGA
883844 AAAAATGA
1 AAAAATGA
883852 AAA
1 AAA
883855 TGAAAATGAA
Statistics
Matches: 75, Mismatches: 2, Indels: 15
0.82 0.02 0.16
Matches are distributed among these distances:
5 5 0.07
6 6 0.08
7 22 0.29
8 33 0.44
9 7 0.09
10 2 0.03
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (8 bp):
AAAAATGA
Found at i:883823 original size:30 final size:30
Alignment explanation
Indices: 883779--883943 Score: 138
Period size: 30 Copynumber: 5.3 Consensus size: 30
883769 GAAAAATGAA
*
883779 AAATGAAAAAAGAAAAAGAAAAAAGAAAAG
1 AAATAAAAAAAGAAAAAGAAAAAAGAAAAG
* * *
883809 AAATAAAGAAAGAAAATGAAAAAATAAAA-
1 AAATAAAAAAAGAAAAAGAAAAAAGAAAAG
* *
883838 AAATAAAAAAATGAAAATG-AAAATGAAAATG
1 AAATAAAAAAA-GAAAAAGAAAAAAGAAAA-G
883869 AAA-AAGAAAAAGAAAAAGAAAAAAAGAAAAGG
1 AAATAA-AAAAAGAAAAAG-AAAAAAGAAAA-G
* * *
883901 TAAGAGAAAAGAAAGAAAAAAAGAAAAAAGAGAAT
1 -AA-ATAAAA-AAAG--AAAAAGAAAAAAGAAAAG
883936 AAATAAAA
1 AAATAAAA
883944 GGGGGTTCAA
Statistics
Matches: 110, Mismatches: 13, Indels: 21
0.76 0.09 0.15
Matches are distributed among these distances:
29 18 0.16
30 40 0.36
31 8 0.07
32 10 0.09
33 7 0.06
34 5 0.05
35 6 0.05
36 10 0.09
37 6 0.05
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (30 bp):
AAATAAAAAAAGAAAAAGAAAAAAGAAAAG
Found at i:883892 original size:7 final size:7
Alignment explanation
Indices: 883763--883931 Score: 74
Period size: 7 Copynumber: 24.1 Consensus size: 7
883753 CCTGAAGAAT
*
883763 AAAAATG
1 AAAAAAG
*
883770 AAAAATG
1 AAAAAAG
*
883777 AAAAATG
1 AAAAAAG
883784 AAAAAAG
1 AAAAAAG
883791 -AAAAAG
1 AAAAAAG
883797 AAAAAAG
1 AAAAAAG
883804 --AAAAG
1 AAAAAAG
883809 AAATAAAG
1 AAA-AAAG
883817 AAAGAAAATG
1 -AA-AAAA-G
*
883827 AAAAAAT
1 AAAAAAG
883834 AAAAAA-
1 AAAAAAG
883840 ATAAAAA-
1 A-AAAAAG
883847 AATGAAAATG
1 AA--AAAA-G
*
883857 -AAAATG
1 AAAAAAG
*
883863 -AAAATG
1 AAAAAAG
883869 -AAAAAG
1 AAAAAAG
883875 -AAAAAG
1 AAAAAAG
883881 -AAAAAG
1 AAAAAAG
883887 AAAAAAAG
1 -AAAAAAG
883895 AAAAGGTAAG
1 AAAA---AAG
*
883905 AGAAAAG
1 AAAAAAG
*
883912 -AAAGA-
1 AAAAAAG
883917 AAAAAAG
1 AAAAAAG
883924 AAAAAAG
1 AAAAAAG
883931 A
1 A
883932 GAATAAATAA
Statistics
Matches: 135, Mismatches: 8, Indels: 38
0.75 0.04 0.21
Matches are distributed among these distances:
5 5 0.04
6 39 0.29
7 57 0.42
8 18 0.13
9 8 0.06
10 8 0.06
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (7 bp):
AAAAAAG
Found at i:883898 original size:6 final size:6
Alignment explanation
Indices: 883763--883928 Score: 103
Period size: 6 Copynumber: 26.8 Consensus size: 6
883753 CCTGAAGAAT
883763 AAAAATG AAAAATG AAAAATG AAAAAAG AAAAAG AAAAA- AGAAAAG AAATAA-
1 AAAAA-G AAAAA-G AAAAA-G -AAAAAG AAAAAG AAAAAG A-AAAAG AAA-AAG
* * * *
883815 AGAAAG AAAATG AAAAA- ATAAAA- AAATAA- AAAAATG AAAATG AAAATG
1 AAAAAG AAAAAG AAAAAG A-AAAAG AAA-AAG AAAAA-G AAAAAG AAAAAG
* * **
883863 AAAATG AAAAAG AAAAAG AAAAAG AAAAAA AGAAAAG -GTAAG AGAAAAG
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A-AAAAG AAAAAG A-AAAAG
883912 AAAGAA- AAAAAG AAAAA
1 AAA-AAG AAAAAG AAAAA
883929 AGAGAATAAA
Statistics
Matches: 133, Mismatches: 12, Indels: 29
0.76 0.07 0.17
Matches are distributed among these distances:
5 13 0.10
6 83 0.62
7 32 0.24
8 5 0.04
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (6 bp):
AAAAAG
Found at i:883905 original size:24 final size:24
Alignment explanation
Indices: 883878--883923 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
883868 GAAAAAGAAA
883878 AAGA-AAAAGAAAAAAAGAAAAGGT
1 AAGAGAAAAGAAAAAAA-AAAAGGT
*
883902 AAGAGAAAAGAAAGAAAAAAAG
1 AAGAGAAAAGAAAAAAAAAAAG
883924 AAAAAAGAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.02
Consensus pattern (24 bp):
AAGAGAAAAGAAAAAAAAAAAGGT
Found at i:883944 original size:29 final size:27
Alignment explanation
Indices: 883872--883934 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 27
883862 GAAAATGAAA
*
883872 AAGAAAAAGAAAAAGAAAAAAAGAAAAGG
1 AAGAGAAA-AAAAAGAAAAAAAGAAAA-G
*
883901 TAAGAGAAAAGAAAGAAAAAAAGAAAA-
1 -AAGAGAAAAAAAAGAAAAAAAGAAAAG
883928 AAGAGAA
1 AAGAGAA
883935 TAAATAAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 7 0.23
29 17 0.55
30 7 0.23
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.02
Consensus pattern (27 bp):
AAGAGAAAAAAAAGAAAAAAAGAAAAG
Found at i:885422 original size:135 final size:134
Alignment explanation
Indices: 885171--885615 Score: 511
Period size: 135 Copynumber: 3.3 Consensus size: 134
885161 AATTGAACTT
* * ** * * *
885171 GATTCAATATTCTCTGAAGAATAGTGGAATGAATCAACATTTCCATATATGA-CTTTCCCTCAAG
1 GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACATCCCCATATATGATTTTTCTCTCGAG
* * *
885235 AAGCAGC-GAAACAGATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGTAACAAGTC
66 AAGTA-CAG-AACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGGAACAAGTC
885299 TACCTC
129 TACCTC
* * * * * *
885305 GATTCAATATTCCCTGAAAAATAGTGGAATGAATCAACATCCCCATATCTAATTTTTTTTTCGAG
1 GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACATCCCCATATATGATTTTTCTCTCGAG
*
885370 AAGTACCAGAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGCGGAACAAGTCT
66 AAGTA-CAGAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGGAACAAGTCT
885435 ACCTC
130 ACCTC
* * * * * * ** **
885440 GATTCAATCTTCCCTGTAGAACAATGGAATGAATCAACGTCCCTAGATATGATTTCCCTCAAGAA
1 GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACATCCCCATATATGATTTTTCTCTCG-A
* * * * * *
885505 GAAGTA-A-AATATATCTCTCTTTTTCTAGATTTGATCTTCCCTGAGGAACAGTGGAACAAGTCT
65 GAAGTACAGAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGGAACAAGTCT
*
885568 ACTTC
130 ACCTC
*
885573 GATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATCCC
1 GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACATCCC
885616 AGATCTGATT
Statistics
Matches: 265, Mismatches: 43, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
133 93 0.35
134 47 0.18
135 117 0.44
136 8 0.03
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.31
Consensus pattern (134 bp):
GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACATCCCCATATATGATTTTTCTCTCGAG
AAGTACAGAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGGAACAAGTCTA
CCTC
Found at i:885566 original size:133 final size:133
Alignment explanation
Indices: 885171--885636 Score: 538
Period size: 133 Copynumber: 3.5 Consensus size: 133
885161 AATTGAACTT
* * * *
885171 GATTCAATATTCTCTGAAGAATAGTGGAATGAATCAACATTTCCATATATGACTTTCCCTCAAGA
1 GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACA-TCCCAGATATGACTTTCCCTCAAGA
* ** * *
885236 AGCAGCGAAACAGATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGTAACAAGTCTA
65 AGAAGTAAAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGGAACAAGTCTA
885301 CCTC
130 CCTC
* * * * * * *** *
885305 GATTCAATATTCCCTGAAAAATAGTGGAATGAATCAACATCCCCATATCTAATTTTTTTTTCGAG
1 GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACAT-CCCAGATATGA-CTTTCCCTCAAG
* ** * *
885370 AAGTACCAGAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGCGGAACAAGTCT
64 AAGAAGTAAAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGGAACAAGTCT
885435 ACCTC
129 ACCTC
* * * *
885440 GATTCAATCTTCCCTGTAGAACAATGGAATGAATCAACGTCCCTAGATATGA-TTTCCCTCAAGA
1 GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACATCCC-AGATATGACTTTCCCTCAAGA
* * * * * *
885504 AGAAGTAAAATATATCTCTCTTTTTCTAGATTTGATCTTCCCTGAGGAACAGTGGAACAAGTCTA
65 AGAAGTAAAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGGAACAAGTCTA
*
885569 CTTC
130 CCTC
* * * *
885573 GATTCAATCTTCCCTGAAGAACAGTGGAATGAATCAACATCCCAGATCTGATTTTCCCTTAAGA
1 GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACATCCCAGATATGACTTTCCCTCAAGA
885637 GCAACGAAAT
Statistics
Matches: 281, Mismatches: 47, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
132 7 0.02
133 117 0.42
134 48 0.17
135 109 0.39
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (133 bp):
GATTCAATATTCCCTGAAGAACAGTGGAATGAATCAACATCCCAGATATGACTTTCCCTCAAGAA
GAAGTAAAACAAATCTCTCTTTTTCCAGATTTGATATTCCCTAAGGAATAGTGGAACAAGTCTAC
CTC
Found at i:885857 original size:3 final size:3
Alignment explanation
Indices: 885849--885910 Score: 83
Period size: 3 Copynumber: 20.7 Consensus size: 3
885839 CCTTTTTGCT
885849 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
885895 TTTA TTTA TTT TTA TT
1 -TTA -TTA TTA TTA TT
885911 TCTGCATGCT
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
2 4 0.07
3 43 0.80
4 7 0.13
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:887564 original size:132 final size:130
Alignment explanation
Indices: 887214--887567 Score: 412
Period size: 132 Copynumber: 2.7 Consensus size: 130
887204 ATCTATATTG
* * * * *
887214 AGAAAAATAATATATTTTCATTTCGGTTGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTTA
1 AGAATAATGATATATCTTCATTTC-GTCGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCA
** * *
887279 TTTATTCTCGATTGG-AATCATTAGATATTATTGTTTTCTCTCAAATCAATATTGATTTTTAAGA
65 TTTATTCTCGATTGGAAATCATTAGATATTACCGTTTTCACTCAAATCAATATTGAATTTTAAGA
887343 C
130 C
* * *
887344 AGAATAATGATATATCTTCA-TT--TCGGAGCAATAAATGACTGCTTTAAGGTATTAGAGGTCAT
1 AGAATAATGATATATCTTCATTTCGTCGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
* * * * **
887406 TTACTCTTGATTCGAAATCATTAGATATTACCGTTTTCACTCGAATTGATATTGAATTTTAAGAC
66 TTATTCTCGATTGGAAATCATTAGATATTACCGTTTTCACTCAAATCAATATTGAATTTTAAGAC
* * * * *
887471 -GAAATAGTTGATATATCTTCATTTCGATCGGAGTAATAAATGAATGTTTTAAGGCATGAAATGT
1 AG-AATA-ATGATATATCTTCATTTCG-TCGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGT
* *
887535 CATTTATTCTCGATTGGAAATAATCAGATATTA
63 CATTTATTCTCGATTGGAAATCATTAGATATTA
887568 TCATTTTTTC
Statistics
Matches: 186, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
126 47 0.25
127 47 0.25
128 13 0.07
129 4 0.02
130 17 0.09
132 58 0.31
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (130 bp):
AGAATAATGATATATCTTCATTTCGTCGGAGTAATAAATGACTGCTTTAAGGCATGAGAGGTCAT
TTATTCTCGATTGGAAATCATTAGATATTACCGTTTTCACTCAAATCAATATTGAATTTTAAGAC
Found at i:888195 original size:27 final size:27
Alignment explanation
Indices: 888165--888218 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
888155 CCGTATCATC
888165 ATCCATGGTAGCATGAAGAAGTGAAGG
1 ATCCATGGTAGCATGAAGAAGTGAAGG
*
888192 ATCCATGGTTGCATGAAGAAGTGAAGG
1 ATCCATGGTAGCATGAAGAAGTGAAGG
888219 GTGAGGGTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.20
Consensus pattern (27 bp):
ATCCATGGTAGCATGAAGAAGTGAAGG
Found at i:892583 original size:101 final size:103
Alignment explanation
Indices: 892408--892605 Score: 244
Period size: 101 Copynumber: 1.9 Consensus size: 103
892398 AATTCATACT
* * * * *
892408 ACAAAAAAATGTATCACTTAACGCATACTTAGACCGGTGTAAGTGAATAAATAAACAAGTACATC
1 ACAAAAAAATGTAGCACTTAACGCATACATAGACCAGTGTAAGTGAATAAATAAACAAATACAGC
892473 ACTTAACACATACTT-A-CACCGATGTAAGTGGATAAA
66 ACTTAACACATACTTAATCACCGATGTAAGTGGATAAA
* * *
892509 ACAAAAAAGTGTAGCACTTAACGCATA-AT-GCATCAGTGTAAGTGAATAAAATAAA-AAATATT
1 ACAAAAAAATGTAGCACTTAACGCATACATAG-ACCAGTGTAAGTGAAT-AAATAAACAAATA-C
*
892571 AGCCCTTAACACATACTTACATCACCGATGTAAGT
63 AGCACTTAACACATACTTA-ATCACCGATGTAAGT
892606 ATGTACATCT
Statistics
Matches: 82, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
99 1 0.01
100 19 0.23
101 48 0.59
103 1 0.01
104 13 0.16
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (103 bp):
ACAAAAAAATGTAGCACTTAACGCATACATAGACCAGTGTAAGTGAATAAATAAACAAATACAGC
ACTTAACACATACTTAATCACCGATGTAAGTGGATAAA
Found at i:896449 original size:71 final size:68
Alignment explanation
Indices: 896327--896467 Score: 212
Period size: 71 Copynumber: 2.0 Consensus size: 68
896317 CTGAAAATTT
896327 TAAATTCTTATATATTTTAGATATTTTTATATTTTCTATTAAAAGTTTAATTTCGTTTCTCTATT
1 TAAATTCTTATATATTTTAGATATTTTTATATTTTCTATTAAAAGTTTAATTTCGTTTCTCTATT
896392 TTA
66 TTA
* * *
896395 TAAATTTTTATATATTTTAGATGTTTGTTTTATATTTTCTATTAAAA-TTCTAATTTTGTTTCTC
1 TAAATTCTTATATATTTTAGA--TAT-TTTTATATTTTCTATTAAAAGTT-TAATTTCGTTTCTC
896459 TATTTTA
62 TATTTTA
896466 TA
1 TA
896468 TGTATGTATT
Statistics
Matches: 66, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
68 20 0.30
70 4 0.06
71 42 0.64
ACGTcount: A:0.28, C:0.06, G:0.05, T:0.60
Consensus pattern (68 bp):
TAAATTCTTATATATTTTAGATATTTTTATATTTTCTATTAAAAGTTTAATTTCGTTTCTCTATT
TTA
Found at i:897048 original size:181 final size:182
Alignment explanation
Indices: 896694--897110 Score: 545
Period size: 181 Copynumber: 2.3 Consensus size: 182
896684 GATCCAAATT
* * * * ** *
896694 AAAAATGTGTCAATCCAAAACGATATAACAGGTAAAACTATGACAAAATCGGTATTGAAATGATA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAATCGGTATCAAAATAATA
* * * *
896759 AAATCGGTAAAGCGCTACCGGATACATTTAAAGTATCAGTATTTTAATATAAGGATCGACACTTC
66 AAACCGGTAAAACGCTACCGGATACATTAAAAGTATCAGTACTTTAATATAAGGATCGACACTTC
*
896824 GTGAATTTAAAAGAGAAGCAATTTTAAATCCTATAAAGTGTCGATACTTTTA
131 GTGAATTTAAAAGAGAAGCAATTTTAAATCCTATAAAGTGTCGATACTTTAA
*
896876 AAAAATGTATCGATCCAAAACGATATACCAGGTAAAAATATGATAAAATCGGTATCAAAATTAAT
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAATCGGTATCAAAA-TAAT
* * *
896941 -AAACCGGTAAAACGTTACCGGATATATTAAAAGTGTC-GATACTTT-ATATAAGGATCGACACT
65 AAAACCGGTAAAACGCTACCGGATACATTAAAAGTATCAG-TACTTTAATATAAGGATCGACACT
* * * ** *
897003 TTGTGAATTTAAAAGAGAAGTAGTTTTAGCGT-CTATAATGTGTCGATACTTTAA
129 TCGTGAATTTAAAAGAGAAGCAATTTTA-AATCCTATAAAGTGTCGATACTTTAA
* * * *
897057 AAAAATATATCGATCTACAACGATATAACAGGTAAAAATATGATAAAACCGGTA
1 AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAATCGGTA
897111 AAACGATACC
Statistics
Matches: 205, Mismatches: 27, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
181 112 0.55
182 90 0.44
183 3 0.01
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (182 bp):
AAAAATGTATCGATCCAAAACGATATAACAGGTAAAAATATGATAAAATCGGTATCAAAATAATA
AAACCGGTAAAACGCTACCGGATACATTAAAAGTATCAGTACTTTAATATAAGGATCGACACTTC
GTGAATTTAAAAGAGAAGCAATTTTAAATCCTATAAAGTGTCGATACTTTAA
Found at i:899354 original size:21 final size:21
Alignment explanation
Indices: 899328--899393 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
899318 AATACAATCA
*
899328 AGAGTCGAAGAGAAACTTGAT
1 AGAGTCGAAGAGAAACTTGAG
*
899349 AGAGTCGAAGAGAAATTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
899370 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
899391 AGA
1 AGA
899394 CATAAGGGGG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.42, C:0.09, G:0.30, T:0.18
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:899468 original size:33 final size:33
Alignment explanation
Indices: 899426--899491 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
899416 AAATAGATGG
**
899426 AGTGGTGAAAGAAGTAGAGGTGTTGCGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
* *
899459 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
899492 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.02, G:0.48, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:901338 original size:18 final size:19
Alignment explanation
Indices: 901278--901327 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
901268 AATGTAGGGT
901278 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
901297 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
901316 TAATTTTGTATA
1 TAATTTTGTATA
901328 TGAATATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:901903 original size:200 final size:200
Alignment explanation
Indices: 901560--902323 Score: 1332
Period size: 200 Copynumber: 3.8 Consensus size: 200
901550 AATTTACAAT
* *
901560 ATGGCAAACATGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
*
901625 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAATCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
901690 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATATTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
901755 AATGA
196 AATGA
*
901760 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCGATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
901825 CGAAACCCATAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCAGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
901890 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
901955 AATGA
196 AATGA
* *
901960 ATGGCAAACAGAGTGCAACAATAAAGTGTCGATCCACATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* *
902025 CGAAACCCATAAGTATAATGTAATAAGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* *
902090 ATGAGAGAATAGGTCTAAATAATATGTCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
131 ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
902155 AATGA
196 AATGA
*
902160 ATGGCAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
1 ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
* * *
902225 CGAAACCCAAAAGTATAATGTATTTGGTAATTTTTCAATCTAACCGGTATAAGTATACCGGTTTT
66 CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
* * *
902290 ATGGGAGAATTGGTATATAAT-ATGTATCGACACT
131 ATGAGAGAATAGGTCTA-AATAATGTATCGACACT
902324 GTTTAATGTT
Statistics
Matches: 536, Mismatches: 27, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
200 533 0.99
201 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (200 bp):
ATGGCAAACAGGGTGCAACAATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCATAAACAT
CGAAACCCAAAAGTATAATGTAATAGGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
ATGAGAGAATAGGTCTAAATAATGTATCGACACTTTTGTAGTTTGTGTCGATATTTTTGGTCCAG
AATGA
Found at i:903804 original size:6 final size:6
Alignment explanation
Indices: 903793--903856 Score: 65
Period size: 6 Copynumber: 10.7 Consensus size: 6
903783 CAAGCGGTCA
* * * * *
903793 ATGAAG ATGAAG CTGACG ATGAAG ATGACG ATGAAG ATGACG ATGATG
1 ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG ATGAAG
* *
903841 ATGATG ATGATG ATGA
1 ATGAAG ATGAAG ATGA
903857 TCCAAACAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 50 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.22
Consensus pattern (6 bp):
ATGAAG
Found at i:903842 original size:3 final size:3
Alignment explanation
Indices: 903810--903857 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
903800 TGAAGCTGAC
* * * *
903810 GAT GAA GAT GAC GAT GAA GAT GAC GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
903858 CCAAACAAGT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.38, C:0.04, G:0.33, T:0.25
Consensus pattern (3 bp):
GAT
Found at i:903857 original size:12 final size:12
Alignment explanation
Indices: 903793--903856 Score: 83
Period size: 12 Copynumber: 5.3 Consensus size: 12
903783 CAAGCGGTCA
*
903793 ATGAAGATGAAG
1 ATGACGATGAAG
*
903805 CTGACGATGAAG
1 ATGACGATGAAG
903817 ATGACGATGAAG
1 ATGACGATGAAG
*
903829 ATGACGATGATG
1 ATGACGATGAAG
* *
903841 ATGATGATGATG
1 ATGACGATGAAG
903853 ATGA
1 ATGA
903857 TCCAAACAAG
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 47 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.22
Consensus pattern (12 bp):
ATGACGATGAAG
Found at i:905407 original size:183 final size:182
Alignment explanation
Indices: 905067--905472 Score: 697
Period size: 183 Copynumber: 2.2 Consensus size: 182
905057 CAAAGTTTTC
* *
905067 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATGCCTTTT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
*
905132 CAAAAAGTGTCGATTGAAAAAACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATA
66 CAAAAAGTGTCGATT--AAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
*
905197 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCG
129 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAAAACCTATATCG
*
905251 ACACTTTTTAATATTATGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
* *
905316 CAAAAAGTGTCGACATT-TATACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
66 CAAAAAGTGTCG--ATTAAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATA
905380 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAAAACCTATATCG
129 TAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAAAACCTATATCG
*
905434 ACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAGAAT
1 ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAAT
905473 TATAATGTAC
Statistics
Matches: 211, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
183 134 0.64
184 74 0.35
186 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (182 bp):
ACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAAAAATGTGTCGATACCTTGT
CAAAAAGTGTCGATTAAAAACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATA
ACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAAAACCTATATCG
Found at i:905559 original size:120 final size:120
Alignment explanation
Indices: 905346--905592 Score: 413
Period size: 120 Copynumber: 2.1 Consensus size: 120
905336 ACATCGGAAC
*
905346 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGATATAAATATACCGGTTTTATGAGC
*
905411 GAATAGGTCTAAAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTAAAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
* * * *
905466 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGATATTAGTATACCGGTTTTATTAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGATATAAATATACCGGTTTTATGAGC
* * *
905531 GAATAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGTTACTTTATGT
66 GAATAGGTCTAAAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
905586 CCAGAAT
1 CCAGAAT
905593 GGAAGAAAAA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGATATAAATATACCGGTTTTATGAGC
GAATAGGTCTAAAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
Found at i:905798 original size:302 final size:303
Alignment explanation
Indices: 905167--906059 Score: 1626
Period size: 302 Copynumber: 3.0 Consensus size: 303
905157 CGGAACCCAT
* * *
905167 AATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAAT
1 AATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAAT
* *
905232 AGGTCTACAACCTATATCGACACTTTTTAATATTATGTCGGTACTTTATGTCCAGAATGGAAGAA
66 AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAA
*
905297 AAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTATACATCGGAACCCAGAATTATAATGTA
131 AAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTA
* *
905362 ATAGATAATTTTGTAATATAACCGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTAAAACC
196 ATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACC
905427 TATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAG
261 TATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAG
* *
905470 AATTATAATGTACTAGATAATTTTGTAATATAACCGATATTAGTATACCGGTTTTATTAGCGAAT
1 AATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAAT
*
905535 AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGTTACTTTATGTCCAGAATGGAAGAA
66 AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAA
*
905600 AAATGTGTCTATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAA-CCAGAATTATAATGTA
131 AAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTA
905664 ATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACC
196 ATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACC
905729 TATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAG
261 TATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAG
* * *
905772 AATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATATCGGTTTTATTAACGATT
1 AATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAAT
905837 AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAA
66 AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAA
*
905902 AAATGTGTAGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTA
131 AAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTA
905967 ATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACC
196 ATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACC
*
906032 TATATCGACACTTTTTAATATTGTGTCG
261 TATATCGACACTTTTTAATTTTGTGTCG
906060 CTAATTTTAA
Statistics
Matches: 568, Mismatches: 21, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
302 292 0.51
303 276 0.49
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.35
Consensus pattern (303 bp):
AATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATACCGGTTTTATTAGCGAAT
AGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGTCCAGAATGGAAGAA
AAATGTGTCGATACCTTGTCAAAAAGTGTCGACATTTACACATCGGAACCCAGAATTATAATGTA
ATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGCGAATAGGTCTACAACC
TATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGTCCAG
Found at i:905826 original size:120 final size:120
Alignment explanation
Indices: 905648--905894 Score: 413
Period size: 120 Copynumber: 2.1 Consensus size: 120
905638 CACATCGGAA
*
905648 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAGC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAAC
*
905713 GAATAGGTCTACAACCTATATCGACACTTTTTAATTTTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
* * * * *
905768 CCAGAATTATAATGTACTAGATAATTTTGTAATATAACCGGTATAAGTATATCGGTTTTATTAAC
1 CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAAC
* *
905833 GATTAGGTCTACAACCTATGTCGACACTTTTTAATATTGTGTCGGTACTTTATGT
66 GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
905888 CCAGAAT
1 CCAGAAT
905895 GGAAGAAAAA
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.38
Consensus pattern (120 bp):
CCAGAATTATAATGTAATAGATAATTTTGTAATATAACCGGTATAAATATACCAGTTTTATGAAC
GAATAGGTCTACAACCTATATCGACACTTTTTAATATTGTGTCGGTACTTTATGT
Found at i:908851 original size:23 final size:23
Alignment explanation
Indices: 908820--908892 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
908810 ATAGGTAAAA
*
908820 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
908843 ATATAATGTAATAGGCAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
908866 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
908889 ATAT
1 ATAT
908893 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:909329 original size:23 final size:23
Alignment explanation
Indices: 909298--909370 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
909288 ATAGGTAAAA
*
909298 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
909321 ATATAATGTAATAGGTAGCGTTT
1 ATATAATGTAATAGGTAGCGCTT
*
909344 ATATAATGTAATAGGTAGTGCTT
1 ATATAATGTAATAGGTAGCGCTT
909367 ATAT
1 ATAT
909371 TGTAAAGTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:909505 original size:478 final size:478
Alignment explanation
Indices: 908608--910249 Score: 2885
Period size: 478 Copynumber: 3.4 Consensus size: 478
908598 GGTGCACGCA
908608 TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
1 TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
*
908673 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATAAA
66 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAT-AT
* *
908738 TGAAATATAAATTACATAACTTTAAAAAAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTT
130 TGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTT
*
908803 CAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGCAGCGTTTAT
195 CAATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTAT
*
908868 ATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTT
260 ATAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTT
908933 TTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTC
325 TTTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTC
908998 TAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATAT
390 TAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATAT
909063 TACATATTTATTATTATCTTTGGT
455 TACATATTTATTATTATCTTTGGT
909087 TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
1 TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
909152 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATATT
66 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATATT
*
909217 GAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAATATGGACACTTTC
131 GAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTC
909282 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATA
196 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATA
909347 TAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTT
261 TAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTT
*
909412 TTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGGCT
326 TTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCT
*
909477 AATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAAAAATAAACATATATATT
391 AATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATT
909542 ACATATTTATTATTATCTTTGGT
456 ACATATTTATTATTATCTTTGGT
* *
909565 TAATATTATTAAATTTAAATTCTAAATAATATTTTATAAAATATTAAAACAATCAAATAATTTTT
1 TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
*
909630 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATT
66 TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATATT
* *
909695 GAAACATAAATTACATAACTTTAAAAAAAATATCGATCTTTTTTATAAAAAGTATGGACACTTTC
131 GAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTC
*
909760 AATATAATAGGTAAAAATCTGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATA
196 AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATA
*
909825 TAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTTCATACTTTT
261 TAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTT
* * *
909890 TTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATCAATATAGTAA
326 TTCACTGTGGAAAACATTAATTTAAGG--------T---T-AGTTTTAAAATATTAATTTAGTAA
* ** * *
909955 TTATATGTATCTAATGATTTATTTTTTATGTTACGGTATATATTATCATTAAATTAAAAACAATA
379 TTATAGGCGTCTAATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATA
910020 AACATATATATTACATATTTATTATTATCTTTGGT
444 AACATATATATTACATATTTATTATTATCTTTGGT
*
910055 TAATATTGTTAAATTTAAATTCTAAATATTATTTTATAAAATATCAAAACAATCAAATAATGTTT
1 TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAAT-TTT
* * *
910120 TT-AGCAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAATA-AT
65 TTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATAT
*
910182 TAAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTT
130 TGAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTT
910247 CAA
195 CAA
910250 CATATTATAA
Statistics
Matches: 1115, Mismatches: 35, Indels: 17
0.96 0.03 0.01
Matches are distributed among these distances:
478 687 0.62
479 127 0.11
486 1 0.00
488 67 0.06
489 5 0.00
490 223 0.20
491 5 0.00
ACGTcount: A:0.42, C:0.07, G:0.11, T:0.40
Consensus pattern (478 bp):
TAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTT
TGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAATATT
GAAACATAAATTACATAACTTTAAAAAAAGTATCGATCATTTTTATAAAAAGTATGGACACTTTC
AATATAATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTAGCGTTTATA
TAATGTAATAGGTAGTGCTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTT
TTCACTGTGGAAAACATTAATTTAAGGTTAGTTTTAAAATATTAATTTAGTAATTATAGGCGTCT
AATGATTTATTTTTTACGTTACGGTATATATTATTATTAAATTAAAAACAATAAACATATATATT
ACATATTTATTATTATCTTTGGT
Found at i:909811 original size:23 final size:23
Alignment explanation
Indices: 909781--909848 Score: 118
Period size: 23 Copynumber: 3.0 Consensus size: 23
909771 TAAAAATCTG
909781 ATGTAATAGGTAGCGCTTATATA
1 ATGTAATAGGTAGCGCTTATATA
*
909804 ATGTAATAGGTAGCGTTTATATA
1 ATGTAATAGGTAGCGCTTATATA
*
909827 ATGTAATAGGTAGTGCTTATAT
1 ATGTAATAGGTAGCGCTTATAT
909849 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.34, C:0.06, G:0.22, T:0.38
Consensus pattern (23 bp):
ATGTAATAGGTAGCGCTTATATA
Found at i:910352 original size:23 final size:23
Alignment explanation
Indices: 910323--910370 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
910313 AAATAGGTCA
*
910323 ATATAAGCGCTACCTATTATATT
1 ATATAAGCGCTACCTAATATATT
*
910346 ATATAAGCGCTACCTAATATGTT
1 ATATAAGCGCTACCTAATATATT
910369 AT
1 AT
910371 TGTACTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (23 bp):
ATATAAGCGCTACCTAATATATT
Found at i:910710 original size:26 final size:26
Alignment explanation
Indices: 910681--910731 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
910671 TTGAAATGAC
910681 TAAATTCTG-GAATTTAGTTTTTTTTT
1 TAAATTC-GAGAATTTAGTTTTTTTTT
*
910707 TAAATTCGAAGGATTTAGTTTTTTT
1 TAAATTCG-AGAATTTAGTTTTTTT
910732 ATATAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 1 0.05
26 7 0.32
27 14 0.64
ACGTcount: A:0.25, C:0.04, G:0.14, T:0.57
Consensus pattern (26 bp):
TAAATTCGAGAATTTAGTTTTTTTTT
Found at i:910806 original size:15 final size:17
Alignment explanation
Indices: 910786--910817 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
910776 TAATTAGAAT
910786 TTAA-TTAT-AATATTA
1 TTAATTTATAAATATTA
910801 TTAATTTATAAATATTA
1 TTAATTTATAAATATTA
910818 AATTATTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.27
16 4 0.27
17 7 0.47
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAATTTATAAATATTA
Found at i:917831 original size:5 final size:5
Alignment explanation
Indices: 917821--917846 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
917811 GTTTTTCTAC
917821 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
917847 CAATTTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:919896 original size:23 final size:23
Alignment explanation
Indices: 919870--919916 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
919860 GACATGGACT
*
919870 GACAGTAGTTGAAAATTCTGAAG
1 GACAGTAGTTGAAAATTCTAAAG
*
919893 GACAGTAGTTGAGAATTCTAAAG
1 GACAGTAGTTGAAAATTCTAAAG
919916 G
1 G
919917 TGAAGTAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.09, G:0.28, T:0.26
Consensus pattern (23 bp):
GACAGTAGTTGAAAATTCTAAAG
Found at i:922874 original size:21 final size:21
Alignment explanation
Indices: 922845--922896 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
922835 CTTTGACCCA
* *
922845 ACCTGTTGACTATTGAGTTTT
1 ACCTATTGACTATTGACTTTT
* *
922866 ACCTATTGACCATTTACTTTT
1 ACCTATTGACTATTGACTTTT
922887 A-CTATTGACT
1 ACCTATTGACT
922897 TTTCCATTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (21 bp):
ACCTATTGACTATTGACTTTT
Found at i:923564 original size:43 final size:42
Alignment explanation
Indices: 923493--923574 Score: 101
Period size: 43 Copynumber: 1.9 Consensus size: 42
923483 TGATGCATTT
*
923493 CTGTTACTACACAGAATCCACTACGGAGGGCATAATCCTCGTC
1 CTGTTACTACACAGAATCCACTACGGAGGG-AAAATCCTCGTC
** * * *
923536 CTGTTACTACATGGGATCCTCTATGGAGGGAAAATCCTC
1 CTGTTACTACACAGAATCCACTACGGAGGGAAAATCCTC
923575 ATCTTGATTC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
42 8 0.24
43 25 0.76
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.26
Consensus pattern (42 bp):
CTGTTACTACACAGAATCCACTACGGAGGGAAAATCCTCGTC
Found at i:923639 original size:28 final size:28
Alignment explanation
Indices: 923574--923630 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
923564 GGAAAATCCT
* *
923574 CATCTTGATTCTATATAGGCATAGTCCC
1 CATCATGATTCTACATAGGCATAGTCCC
* *
923602 TATCATGATTCTACATAGGTATAGTCCC
1 CATCATGATTCTACATAGGCATAGTCCC
923630 C
1 C
923631 GTGCTGATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (28 bp):
CATCATGATTCTACATAGGCATAGTCCC
Found at i:923659 original size:29 final size:30
Alignment explanation
Indices: 923621--923679 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
923611 TCTACATAGG
*
923621 TATAGTCCCCGTGCTGATTT-TGTATGGGAT
1 TATAGTCCCCGTCCTG-TTTCTGTATGGGAT
*
923651 TATA-TCCCCGTCCTGTTTCTGTTTGGGAT
1 TATAGTCCCCGTCCTGTTTCTGTATGGGAT
923680 CCTCTTTGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 3 0.12
29 19 0.73
30 4 0.15
ACGTcount: A:0.14, C:0.20, G:0.24, T:0.42
Consensus pattern (30 bp):
TATAGTCCCCGTCCTGTTTCTGTATGGGAT
Found at i:935234 original size:21 final size:21
Alignment explanation
Indices: 935208--935247 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
935198 CAGAACCCCA
*
935208 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
935229 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
935248 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:935274 original size:21 final size:23
Alignment explanation
Indices: 935230--935277 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
935220 TTCCCCTGTG
935230 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
935253 GGGGGAATCGGTT-CCC-TCAAA
1 GGGGGAATCGGTTCCCCTTCAAA
935274 GGGG
1 GGGG
935278 ATCGATTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 9 0.36
22 3 0.12
23 13 0.52
ACGTcount: A:0.21, C:0.23, G:0.38, T:0.19
Consensus pattern (23 bp):
GGGGGAATCGGTTCCCCTTCAAA
Found at i:935289 original size:19 final size:21
Alignment explanation
Indices: 935230--935289 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 21
935220 TTCCCCTGTG
*
935230 GGGGGAATCGGTTCCCCTTCAAA
1 GGGGGAATCGATT-CCC-TCAAA
*
935253 GGGGGAATCGGTTCCCTCAAA
1 GGGGGAATCGATTCCCTCAAA
*
935274 -GGGG-ATCGATTTCCTC
1 GGGGGAATCGATTCCCTC
935290 TGCACCAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 10 0.29
20 4 0.11
21 5 0.14
22 3 0.09
23 13 0.37
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (21 bp):
GGGGGAATCGATTCCCTCAAA
Found at i:948105 original size:34 final size:34
Alignment explanation
Indices: 948062--948188 Score: 138
Period size: 34 Copynumber: 3.8 Consensus size: 34
948052 TTCGTCCTAC
948062 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* * *
948096 TAGGATTCAAACTCCTAAAGATATGATAAAATTTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
948131 GCTAGGATTCAAA-----AAAAATAGGATAGAATTT
1 --TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* * *
948162 TATGATTTAAACTCCTAAAGATAGGAT
1 TAGGATTCAAACTCCTAAAAATAGGAT
948189 CCACAAGCAC
Statistics
Matches: 76, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
29 9 0.12
31 3 0.04
32 12 0.16
34 38 0.50
35 3 0.04
37 11 0.14
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (34 bp):
TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
Found at i:948486 original size:23 final size:22
Alignment explanation
Indices: 948448--948516 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 22
948438 GTTATTTTTC
*
948448 TTTTTTTT--TTTCATGTAATA
1 TTTTTTTTACTTTTATGTAATA
*
948468 TTTTTTTTACATTTTATGT-ATT
1 TTTTTTTTAC-TTTTATGTAATA
948490 TTCTTTTTTAC-TTTA-GTATATA
1 TT-TTTTTTACTTTTATGTA-ATA
948512 TTTTT
1 TTTTT
948517 ATTTTTTATT
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
20 10 0.25
21 7 0.17
22 8 0.20
23 15 0.38
ACGTcount: A:0.19, C:0.06, G:0.04, T:0.71
Consensus pattern (22 bp):
TTTTTTTTACTTTTATGTAATA
Found at i:948513 original size:24 final size:24
Alignment explanation
Indices: 948470--948524 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
948460 ATGTAATATT
* *
948470 TTTTTTACATTTTATGTA-TTTTC
1 TTTTTTACATTTTATATATTTTTA
948493 TTTTTTAC-TTTAGTATATATTTTTA
1 TTTTTTACATTT--TATATATTTTTA
948518 TTTTTTA
1 TTTTTTA
948525 TTTTTTTAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 3 0.11
23 8 0.30
24 5 0.19
25 11 0.41
ACGTcount: A:0.20, C:0.05, G:0.04, T:0.71
Consensus pattern (24 bp):
TTTTTTACATTTTATATATTTTTA
Found at i:948562 original size:44 final size:43
Alignment explanation
Indices: 948512--948610 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 43
948502 TTAGTATATA
*
948512 TTTTTATTTTTTA-TTTTTTTAGATTATATATATAAATATATTA-T
1 TTTTTATTTTTTAGTTTTATTA-ATT-TATATATAAATAT-TTACT
* * *
948556 TTTTTA-TTATCAGTTTTATTAATTTATATATATATATTTACTT
1 TTTTTATTTTTTAGTTTTATTAATTTATATATAAATATTTAC-T
948599 TTTTTATTTTTT
1 TTTTTATTTTTT
948611 TATATATATT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
41 3 0.07
42 12 0.27
43 14 0.31
44 16 0.36
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (43 bp):
TTTTTATTTTTTAGTTTTATTAATTTATATATAAATATTTACT
Found at i:948605 original size:31 final size:32
Alignment explanation
Indices: 948569--948643 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
948559 TTATTATCAG
*
948569 TTTTATTAATTTATATATA-TATATTTACTTT
1 TTTTATTTATTTATATATATTATATTTACTTT
* *
948600 TTTTATTTTTTTATATATATTATTTTTACTTT
1 TTTTATTTATTTATATATATTATATTTACTTT
948632 TTTTATTTATTT
1 TTTTATTTATTT
948644 GTTTTATTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 17 0.44
32 22 0.56
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (32 bp):
TTTTATTTATTTATATATATTATATTTACTTT
Found at i:948609 original size:9 final size:9
Alignment explanation
Indices: 948592--948705 Score: 54
Period size: 9 Copynumber: 12.4 Consensus size: 9
948582 TATATATATA
*
948592 TTTACTTTT
1 TTTATTTTT
948601 TTTA-TTTT
1 TTTATTTTT
* *
948609 TTTATATAT
1 TTTATTTTT
*
948618 ATTATTTTT
1 TTTATTTTT
*
948627 ACTTT-TTTTA
1 --TTTATTTTT
*
948637 TTTATTTGT
1 TTTATTTTT
*
948646 TTTA-TTTC
1 TTTATTTTT
*
948654 TATATTTTAT
1 TTTATTTT-T
*
948664 TTCTTTTTTT
1 TT-TATTTTT
*
948674 TTTCTTTTT
1 TTTATTTTT
948683 CTTTATTTTT
1 -TTTATTTTT
* *
948693 TATATTTAT
1 TTTATTTTT
948702 TTTA
1 TTTA
948706 CTTACTATTT
Statistics
Matches: 77, Mismatches: 20, Indels: 16
0.68 0.18 0.14
Matches are distributed among these distances:
8 16 0.21
9 38 0.49
10 16 0.21
11 7 0.09
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (9 bp):
TTTATTTTT
Found at i:948632 original size:22 final size:20
Alignment explanation
Indices: 948607--948665 Score: 50
Period size: 22 Copynumber: 2.9 Consensus size: 20
948597 TTTTTTTATT
948607 TTTTTATATATATTATTTTTA
1 TTTTTATAT-TATTATTTTTA
*
948628 CTTTTTTTATTTATT-TGTTTTA
1 -TTTTTATA-TTATTAT-TTTTA
*
948650 TTTCTATATT-TTATTT
1 TTTTTATATTATTATTT
948666 CTTTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 4 0.13
20 3 0.10
21 7 0.23
22 16 0.52
23 1 0.03
ACGTcount: A:0.20, C:0.03, G:0.02, T:0.75
Consensus pattern (20 bp):
TTTTTATATTATTATTTTTA
Found at i:948671 original size:36 final size:35
Alignment explanation
Indices: 948569--948682 Score: 96
Period size: 31 Copynumber: 3.3 Consensus size: 35
948559 TTATTATCAG
** *
948569 TTTTATTAATTTATATATA-TATATTTAC---TTT
1 TTTTATTTTTTTATATATATTATTTTTACTTTTTT
948600 TTTTATTTTTTTATATATATTATTTTTACTTTTTT
1 TTTTATTTTTTTATATATATTATTTTTACTTTTTT
*
948635 TATTTATTTGTTTTATTTCTATATT-TTATTT-CTTTTTT
1 T-TTTATTT-TTTTA--TATATATTATT-TTTACTTTTTT
*
948673 TTTTCTTTTT
1 TTTTATTTTT
948683 CTTTATTTTT
Statistics
Matches: 69, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
31 17 0.25
32 8 0.12
35 4 0.06
36 9 0.13
37 11 0.16
38 10 0.14
39 10 0.14
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (35 bp):
TTTTATTTTTTTATATATATTATTTTTACTTTTTT
Found at i:948674 original size:13 final size:13
Alignment explanation
Indices: 948629--948703 Score: 66
Period size: 13 Copynumber: 5.8 Consensus size: 13
948619 TTATTTTTAC
*
948629 TTTTTTTATTTAT
1 TTTTTTTATTTCT
*
948642 TTGTTTTATTTCT
1 TTTTTTTATTTCT
* *
948655 ATATTTTATTTC-
1 TTTTTTTATTTCT
948667 TTTTTTT-TTTCT
1 TTTTTTTATTTCT
948679 TTTTCTTTATTT-T
1 TTTT-TTTATTTCT
*
948692 TTATATTTATTT
1 TT-TTTTTATTT
948704 TACTTACTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
11 4 0.08
12 9 0.18
13 34 0.67
14 4 0.08
ACGTcount: A:0.13, C:0.05, G:0.01, T:0.80
Consensus pattern (13 bp):
TTTTTTTATTTCT
Found at i:948704 original size:13 final size:13
Alignment explanation
Indices: 948588--948704 Score: 50
Period size: 13 Copynumber: 8.9 Consensus size: 13
948578 TTTATATATA
948588 TATATTTACTTTTT
1 TATATTTA-TTTTT
*
948602 T-TATTT-TTTTA
1 TATATTTATTTTT
948613 TATATATTATTTTT
1 TATAT-TTATTTTT
* *
948627 ACTTTTTTTATTTATT
1 --TATATTTATTT-TT
* *
948643 TGT-TTTA-TTTC
1 TATATTTATTTTT
948654 TATATTTTATTTCTT
1 TATA-TTTATTT-TT
948669 T-T-TTT-TTTCTT
1 TATATTTATTT-TT
* *
948680 TTTCTTTATTTTT
1 TATATTTATTTTT
948693 TATATTTATTTT
1 TATATTTATTTT
948705 ACTTACTATT
Statistics
Matches: 80, Mismatches: 10, Indels: 27
0.68 0.09 0.23
Matches are distributed among these distances:
11 15 0.19
12 9 0.11
13 30 0.38
14 13 0.16
15 8 0.10
16 5 0.06
ACGTcount: A:0.17, C:0.05, G:0.01, T:0.77
Consensus pattern (13 bp):
TATATTTATTTTT
Found at i:951813 original size:12 final size:11
Alignment explanation
Indices: 951795--951867 Score: 60
Period size: 11 Copynumber: 6.5 Consensus size: 11
951785 CAAAAAGGGC
951795 AAAAAGAAAAA
1 AAAAAGAAAAA
*
951806 AGAAAAGAAGCAA
1 A-AAAAGAA-AAA
*
951819 AAAAGGAAAAA
1 AAAAAGAAAAA
*
951830 AAACAAG-AACA
1 AAA-AAGAAAAA
*
951841 AAAAAGAAAGA
1 AAAAAGAAAAA
*
951852 AAAAA-AATAA
1 AAAAAGAAAAA
951862 AAAAAG
1 AAAAAG
951868 GGGACAAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
10 11 0.22
11 20 0.41
12 15 0.31
13 3 0.06
ACGTcount: A:0.81, C:0.04, G:0.14, T:0.01
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:951818 original size:22 final size:22
Alignment explanation
Indices: 951795--951857 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 22
951785 CAAAAAGGGC
951795 AAAAAGAAAAAAGAAAAGAAGCA
1 AAAAAGAAAAAA-AAAAGAAGCA
951818 AAAAAGGAAAAAAAACAAGAA-CA
1 AAAAA-GAAAAAAAA-AAGAAGCA
951841 AAAAAGAAAGAAAAAAA
1 AAAAAGAAA-AAAAAAA
951858 ATAAAAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.16
23 19 0.51
24 12 0.32
ACGTcount: A:0.81, C:0.05, G:0.14, T:0.00
Consensus pattern (22 bp):
AAAAAGAAAAAAAAAAGAAGCA
Found at i:951827 original size:24 final size:23
Alignment explanation
Indices: 951795--951856 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
951785 CAAAAAGGGC
951795 AAAAA-GAAAAAAGAA-AAGAAGCA
1 AAAAAGGAAAAAA-AACAAGAA-CA
951818 AAAAAGGAAAAAAAACAAGAACA
1 AAAAAGGAAAAAAAACAAGAACA
*
951841 AAAAAGAAAGAAAAAA
1 AAAAAGGAA-AAAAAA
951857 AATAAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
23 17 0.49
24 18 0.51
ACGTcount: A:0.81, C:0.05, G:0.15, T:0.00
Consensus pattern (23 bp):
AAAAAGGAAAAAAAACAAGAACA
Found at i:952495 original size:22 final size:22
Alignment explanation
Indices: 952470--952513 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
952460 AAGCTACCCC
952470 ATCAATCCTTTAAGCATCAAAT
1 ATCAATCCTTTAAGCATCAAAT
* *
952492 ATCAATCCTTTGAGCATTAAAT
1 ATCAATCCTTTAAGCATCAAAT
952514 GCCAAACCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.07, T:0.34
Consensus pattern (22 bp):
ATCAATCCTTTAAGCATCAAAT
Found at i:953464 original size:36 final size:36
Alignment explanation
Indices: 953421--953564 Score: 234
Period size: 36 Copynumber: 4.0 Consensus size: 36
953411 ACTAGAAGAG
953421 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
**
953457 TTTTGTCTCTCTTGAGACAGTTTCTATTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
* * *
953493 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
*
953529 TTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAA
1 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
953565 ATATTTGAAT
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 97 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (36 bp):
TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAA
Found at i:953523 original size:72 final size:71
Alignment explanation
Indices: 953422--953701 Score: 288
Period size: 72 Copynumber: 4.0 Consensus size: 71
953412 CTAGAAGAGT
* **
953422 TTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTATTGA
1 TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
953487 AACAAA
66 AACAAA
* *
953493 TTTCGTCTATCTTGAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAATTTCCCTTG
1 TTT-GTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTG
953558 AAACAAA
65 AAACAAA
* * * * * ** * ** *
953565 -----ATAT-TTGA-ATATTTTTCTTTGAAACAAATTTCATCTCCCTTGAGACAGTTTCTTTTGG
1 TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
*
953623 AACTAAGT
66 AAC-AA-A
* * *
953631 TTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTG
1 TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTT-GTCTCTCTTGAGACAGTTTCCCTTG
953695 AAACAAA
65 AAACAAA
953702 ATCTTTGAAT
Statistics
Matches: 164, Mismatches: 34, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
64 41 0.25
65 6 0.04
66 3 0.02
71 5 0.03
72 74 0.45
73 35 0.21
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.40
Consensus pattern (71 bp):
TTTGTCTATCTTGAGACAGTTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGA
AACAAA
Found at i:953609 original size:100 final size:102
Alignment explanation
Indices: 953477--953664 Score: 281
Period size: 101 Copynumber: 1.9 Consensus size: 102
953467 CTTGAGACAG
* *
953477 TTTCTATTGAAACAAATTTCGTCTATCTTGAGACAGTTTCCCTT-GAAATAAATTTTGTCTCTCT
1 TTTCTATTGAAACAAATTTCATCTACCTTGAGACAGTTTCCCTTGGAAATAAATTTTGTCTCTCT
953541 TGAGACAATTTCCCTTGAAACAAAATATTTGAATATT
66 TGAGACAATTTCCCTTGAAACAAAATATTTGAATATT
* ** * *
953578 TTTCT-TTGAAACAAATTTCATCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCTATTGAAACAAATTTCATCTACCTTGAGACAGTTTCCCTTGGAAATAAATTTTGTCTCTCT
* *
953642 TGAGACAGTTTCTCTTGAAACAA
66 TGAGACAATTTCCCTTGAAACAA
953665 TTTTCGTCTA
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
100 33 0.43
101 44 0.57
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (102 bp):
TTTCTATTGAAACAAATTTCATCTACCTTGAGACAGTTTCCCTTGGAAATAAATTTTGTCTCTCT
TGAGACAATTTCCCTTGAAACAAAATATTTGAATATT
Found at i:953686 original size:36 final size:36
Alignment explanation
Indices: 953578--953700 Score: 151
Period size: 36 Copynumber: 3.4 Consensus size: 36
953568 TTTGAATATT
* * *
953578 TTTCT-TTGAAACAAATTTCATCTCCCTTGAGACAG
1 TTTCTCTTGAAACAATTTTCGTCTCTCTTGAGACAG
* *
953613 TTTCTTTTGGAACTAAGTTTT-GTCTCTCTTGAGACAG
1 TTTCTCTTGAAAC-AA-TTTTCGTCTCTCTTGAGACAG
*
953650 TTTCTCTTGAAACAATTTTCGTCTATCTTGAGACAG
1 TTTCTCTTGAAACAATTTTCGTCTCTCTTGAGACAG
*
953686 TTTCCCTTGAAACAA
1 TTTCTCTTGAAACAA
953701 AATCTTTGAA
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
35 9 0.12
36 37 0.49
37 27 0.36
38 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (36 bp):
TTTCTCTTGAAACAATTTTCGTCTCTCTTGAGACAG
Found at i:953692 original size:137 final size:137
Alignment explanation
Indices: 953441--953749 Score: 426
Period size: 137 Copynumber: 2.3 Consensus size: 137
953431 CTTGAGACAG
*
953441 TTTCCCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTATTGAAACAAATTTCGTCTATCTT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTATTGAAACAAATTTCGTCTATCTT
*
953506 GAGACAGTTTCCCTTGAAATAAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACAAAATATTT
66 GAGACAGTTTCCCTTGAAATAAATTTTGTCTATCTTGAGACAATTTCCCTTGAAACAAAATATTT
953571 GAATATT-
131 GAAT-TTA
* ** * * * * *
953578 TTT-CTTTGAAACAAATTTCATCTCCCTTGAGACAGTTTCTTTTGGAACTAAGTTTTGTCTCTCT
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTATTGAAAC-AAATTTCGTCTATCT
* * * *
953642 TGAGACAGTTTCTCTTGAAA-CAATTTTCGTCTATCTTGAGACAGTTTCCCTTGAAACAAAATCT
65 TGAGACAGTTTCCCTTGAAATAAATTTT-GTCTATCTTGAGACAATTTCCCTTGAAACAAAATAT
953706 TTGAATTTA
129 TTGAATTTA
* *
953715 TTTCCCCTAAAACAAATTTTGTCTCCCTTGAGACA
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACA
953750 ATTACTCTCG
Statistics
Matches: 149, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
136 47 0.32
137 76 0.51
138 26 0.17
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (137 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAGTTTCTATTGAAACAAATTTCGTCTATCTT
GAGACAGTTTCCCTTGAAATAAATTTTGTCTATCTTGAGACAATTTCCCTTGAAACAAAATATTT
GAATTTA
Found at i:953763 original size:65 final size:67
Alignment explanation
Indices: 953659--953816 Score: 187
Period size: 67 Copynumber: 2.4 Consensus size: 67
953649 GTTTCTCTTG
** * * * **
953659 AAAC-AATTTTCGTCTATCTTGAGACAGTTTCCCTTG-AA-ACAAAATCTTTGAATTTATTTCCC
1 AAACAAATTTT-GTCTCCCTTGAGACAATTACCCTCGAAACACAAAATCTTCAAATTTATTTCCC
953721 CTA
65 CTA
* *
953724 AAACAAATTTTGTCTCCCTTGAGACAATTACTCTCGAAACACAAAATCTTCAAATTTATTTCCCT
1 AAACAAATTTTGTCTCCCTTGAGACAATTACCCTCGAAACACAAAATCTTCAAATTTATTTCCCC
953789 TA
66 TA
*
953791 AAACATAATTTTGTTTCCCTTGAGAC
1 AAACA-AATTTTGTCTCCCTTGAGAC
953817 CGTTTCTCAT
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
65 23 0.29
66 8 0.10
67 29 0.37
68 19 0.24
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (67 bp):
AAACAAATTTTGTCTCCCTTGAGACAATTACCCTCGAAACACAAAATCTTCAAATTTATTTCCCC
TA
Found at i:954598 original size:105 final size:105
Alignment explanation
Indices: 954437--955095 Score: 963
Period size: 105 Copynumber: 6.3 Consensus size: 105
954427 GCCATCTGCG
* * * *
954437 ATTTCAACTCCACGACGGAGGATATCGTGGCACTCGAGACAACGCAAGTTCAACTTCACGACGAA
1 ATTTCAACTTCACAACGAAGGATAT--TGG-ACTCCAGACAACGCAAGTTCAACTTCACGACGAA
* * *
954502 GGAACCGCTGCCTGTCAACAACAACTTATCAATTTCAGAGCCA
63 GGGACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
*
954545 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGAG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
954610 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* *
954650 ATTTTAACTTCACAACGAAGGATATTGGACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
954715 ACCGCTGCTTGTCAACAACAACTTCCCAATCTCAGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
*
954755 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAATGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* *
954820 ACCGCTGCTTGTCAACAACAACTTCCCAATAT-AGAGCCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
954859 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
**
954924 ACCGCTGCTTGTCAACAA-AA-TT-TC-A-TTCAGATTCA
66 ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
* * *
954959 ATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACACAAGTTCAACTTCACAACGAAGGG
1 ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
* * * ** *
955024 ACGGCTGGTTGTCAACAAACAA-TTTTCCGGTTCCAGAGCCA
66 ACCGCTGCTTGTCAAC-AACAACTTCT-CAATTTCAGAGCCA
** *
955065 ATTTCAACTTCATGACGGAGGATATTGGACT
1 ATTTCAACTTCACAACGAAGGATATTGGACT
955096 TAGAACAATG
Statistics
Matches: 510, Mismatches: 34, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
99 1 0.00
100 82 0.16
101 3 0.01
102 6 0.01
103 3 0.01
104 90 0.18
105 265 0.52
106 38 0.07
108 22 0.04
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
ATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGG
ACCGCTGCTTGTCAACAACAACTTCTCAATTTCAGAGCCA
Found at i:955688 original size:34 final size:34
Alignment explanation
Indices: 955645--955771 Score: 138
Period size: 34 Copynumber: 3.8 Consensus size: 34
955635 TTCGTCCTAC
955645 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* * *
955679 TAGGATTCAAACTCCTAAAGATATGATAAAATTTT
1 TAGGATTCAAACTCCTAAAAATAGGATAGAA-TTT
955714 GCTAGGATTCAAA-----AAAAATAGGATAGAATTT
1 --TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
* * *
955745 TATGATTTAAACTCCTAAAGATAGGAT
1 TAGGATTCAAACTCCTAAAAATAGGAT
955772 CCACAAGCAC
Statistics
Matches: 76, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
29 9 0.12
31 3 0.04
32 12 0.16
34 38 0.50
35 3 0.04
37 11 0.14
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (34 bp):
TAGGATTCAAACTCCTAAAAATAGGATAGAATTT
Found at i:956086 original size:23 final size:22
Alignment explanation
Indices: 956044--956087 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
956034 CATGTAATAT
*
956044 TTTTTTACATTTTATTTATTTC
1 TTTTTTACATTTTATATATTTC
956066 TTTTTTAC-TTTAGTATATATTT
1 TTTTTTACATTT--TATATATTT
956088 TTATTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 3 0.16
22 8 0.42
23 8 0.42
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTTTTACATTTTATATATTTC
Found at i:956115 original size:32 final size:33
Alignment explanation
Indices: 956053--956117 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
956043 TTTTTTTACA
*
956053 TTTTATTTATTTCTTTTTTACTTTAGTATATAT
1 TTTTATTTATTTCTTTTTTACATTAGTATATAT
* *
956086 TTTTATTT-TTTATTTTTTTAGATTA-TATATAT
1 TTTTATTTATTT-CTTTTTTACATTAGTATATAT
956118 AAATATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 10 0.36
33 18 0.64
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (33 bp):
TTTTATTTATTTCTTTTTTACATTAGTATATAT
Found at i:956124 original size:40 final size:37
Alignment explanation
Indices: 956079--956207 Score: 116
Period size: 40 Copynumber: 3.3 Consensus size: 37
956069 TTTACTTTAG
956079 TATATATTTTTATTTTTTATTTTTTTAGATTATATATATA
1 TATATATTTTT-TTTTTTATTTTTTTA-ATT-TATATATA
* * * *
956119 AATATATTATTTTATTATCAGTTTTATTAATTTATATATA
1 TATATATT-TTTT-TTTTTA-TTTTTTTAATTTATATATA
* * *
956159 TATATATTTACTTTTTTTATTTTTTT-ATTTTTTTATA
1 TATATATTT-TTTTTTTTATTTTTTTAATTTATATATA
956196 TATATTATTTTT
1 TATA-TATTTTT
956208 ACTTTATTTA
Statistics
Matches: 72, Mismatches: 12, Indels: 13
0.74 0.12 0.13
Matches are distributed among these distances:
37 14 0.19
38 11 0.15
39 5 0.07
40 25 0.35
41 10 0.14
42 7 0.10
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (37 bp):
TATATATTTTTTTTTTTATTTTTTTAATTTATATATA
Found at i:956125 original size:42 final size:38
Alignment explanation
Indices: 956079--956220 Score: 121
Period size: 37 Copynumber: 3.6 Consensus size: 38
956069 TTTACTTTAG
956079 TATATATTTTTATTTTTTATTTTTTTAGA-TTATATATA
1 TATATATTTTTATTTTTTATTTTTTTA-ATTTATATATA
* *
956117 TAAATA-TATTATTTTATTATCAGTTTTATTAATTTATATATA
1 TATATATTTTTATTTT-TTAT---TTTT-TTAATTTATATATA
* * *
956159 TATATATTTACT-TTTTTTATTTTTTT-ATTTTTTTATA
1 TATATATTT-TTATTTTTTATTTTTTTAATTTATATATA
956196 TATATTATTTTTACTTTATTTATTT
1 TATA-TATTTTTA-TTT-TTTATTT
956221 ATTTGTTTTA
Statistics
Matches: 84, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
37 22 0.26
38 16 0.19
39 7 0.08
40 7 0.08
41 5 0.06
42 21 0.25
43 5 0.06
44 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (38 bp):
TATATATTTTTATTTTTTATTTTTTTAATTTATATATA
Found at i:956182 original size:9 final size:9
Alignment explanation
Indices: 956165--956276 Score: 68
Period size: 9 Copynumber: 12.4 Consensus size: 9
956155 TATATATATA
*
956165 TTTACTTTT
1 TTTATTTTT
956174 TTTA-TTTT
1 TTTATTTTT
956182 TTTA-TTTT
1 TTTATTTTT
* *
956190 TTTATATAT
1 TTTATTTTT
*
956199 ATTATTTTT
1 TTTATTTTT
*
956208 ACTTTA-TTTA
1 --TTTATTTTT
*
956218 TTTATTTGT
1 TTTATTTTT
*
956227 TTTATTTCT
1 TTTATTTTT
* *
956236 ATAATTTTT
1 TTTATTTTT
*
956245 TTTCTTTTT
1 TTTATTTTT
956254 CTTTATTTTT
1 -TTTATTTTT
* *
956264 TATATTTAT
1 TTTATTTTT
956273 TTTA
1 TTTA
956277 CTTACTATTT
Statistics
Matches: 78, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
8 20 0.26
9 44 0.56
10 11 0.14
11 3 0.04
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (9 bp):
TTTATTTTT
Found at i:956186 original size:33 final size:34
Alignment explanation
Indices: 956140--956222 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
956130 TTATTATCAG
*
956140 TTTTATTAATTTATATATATATATAT-TTACTTT
1 TTTTATTTATTTATATATATATATATATTACTTT
* * * * *
956173 TTTTATTTTTTTATTTTTTTATATATATTATTTT
1 TTTTATTTATTTATATATATATATATATTACTTT
956207 TACTTTATTTATTTAT
1 T--TTTATTTATTTAT
956223 TTGTTTTATT
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
33 21 0.52
34 7 0.17
36 12 0.30
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (34 bp):
TTTTATTTATTTATATATATATATATATTACTTT
Found at i:956196 original size:37 final size:36
Alignment explanation
Indices: 956141--956279 Score: 99
Period size: 40 Copynumber: 3.8 Consensus size: 36
956131 TATTATCAGT
* * *
956141 TTTATTAATTTATATATATATATATTTACTTTTTTTA
1 TTTATTTATTTTTTTATATATAT-TTTACTTTTTTTA
* *
956178 TTTTTTTATTTTTTTATATATATTATTTTTACTTTATTTA
1 TTTATTTA-TTTTTT-TATATA-TA-TTTTACTTTTTTTA
* * *
956218 TTTATTTGTTTTATTTCTATA-ATTTT--TTTTCTT-
1 TTTATTTATTTT-TTTATATATATTTTACTTTTTTTA
* *
956251 TTTCTTTA-TTTTTTATATTTATTTTACTT
1 TTTATTTATTTTTTTATATATATTTTACTT
956280 ACTATTTTAT
Statistics
Matches: 80, Mismatches: 14, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
31 6 0.08
32 8 0.10
33 6 0.08
34 7 0.09
36 4 0.05
37 7 0.09
38 4 0.05
39 15 0.19
40 22 0.28
41 1 0.01
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.73
Consensus pattern (36 bp):
TTTATTTATTTTTTTATATATATTTTACTTTTTTTA
Found at i:956217 original size:4 final size:4
Alignment explanation
Indices: 956141--956224 Score: 55
Period size: 4 Copynumber: 20.8 Consensus size: 4
956131 TATTATCAGT
* * * * * * *
956141 TTTA TTAA TTTA TATA TATA TATA TTTA CTTTT TTTA TTTT TTTA TTTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA
*
956190 TTTA TATA TATTA -TT- TTTA CTTTA TTTA TTTA TTT
1 TTTA TTTA T-TTA TTTA TTTA -TTTA TTTA TTTA TTT
956225 GTTTTATTTC
Statistics
Matches: 63, Mismatches: 12, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
3 4 0.06
4 50 0.79
5 9 0.14
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (4 bp):
TTTA
Found at i:956258 original size:45 final size:49
Alignment explanation
Indices: 956203--956328 Score: 125
Period size: 46 Copynumber: 2.5 Consensus size: 49
956193 ATATATATTA
*
956203 TTTTTACTTTATTTATTTATTTGTTTTA-TTTCTA-TAAT-TTT-TTTTC
1 TTTTT-CTTTATTTATTTATTTGTTTTACTTACTATTAATCTTTGTTTTC
* * *
956249 TTTTTCTTTATTTTTTATATTTATTTTACTTACTATTTTATCTTTGTTTTC
1 TTTTTCTTTATTTATT-TATTTGTTTTACTTACTA-TTAATCTTTGTTTTC
*
956300 TTTATCTTATATTTTATTTAATTTGTTTT
1 TTTTTCTT-TA-TTTATTT-ATTTGTTTT
956329 CTCTTTATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
45 10 0.16
46 15 0.23
47 5 0.08
49 3 0.05
50 3 0.05
51 12 0.19
52 3 0.05
53 13 0.20
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.73
Consensus pattern (49 bp):
TTTTTCTTTATTTATTTATTTGTTTTACTTACTATTAATCTTTGTTTTC
Found at i:956351 original size:30 final size:30
Alignment explanation
Indices: 956291--956352 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
956281 CTATTTTATC
* *
956291 TTTGTTTTCTTTATCTTATATTTTATTTAA
1 TTTGTTTTCTTTATCTTATAATTTAATTAA
956321 TTTGTTTTCTCTTTAT-TT-TAATTTAATTAA
1 TTTG-TTT-TCTTTATCTTATAATTTAATTAA
956351 TT
1 TT
956353 AATTTATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 16 0.57
31 5 0.18
32 7 0.25
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.69
Consensus pattern (30 bp):
TTTGTTTTCTTTATCTTATAATTTAATTAA
Found at i:956381 original size:15 final size:15
Alignment explanation
Indices: 956363--956392 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
956353 AATTTATTTC
956363 TTACCTTTTTATCTA
1 TTACCTTTTTATCTA
956378 TTACCTTTTTATCTA
1 TTACCTTTTTATCTA
956393 ACATGGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (15 bp):
TTACCTTTTTATCTA
Found at i:959181 original size:24 final size:24
Alignment explanation
Indices: 959152--959199 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
959142 AAAATTATTA
959152 TAGGATTTATATTTTG-ATTATTTT
1 TAGGATTTATATTTTGTA-TATTTT
959176 TAGGATTTATATTTTGTATATTTT
1 TAGGATTTATATTTTGTATATTTT
959200 ATTTTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (24 bp):
TAGGATTTATATTTTGTATATTTT
Found at i:961201 original size:81 final size:81
Alignment explanation
Indices: 961015--961883 Score: 1152
Period size: 81 Copynumber: 10.7 Consensus size: 81
961005 TTCTAAAAAG
* * *
961015 AGATTAATGGCCTAGGTATGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATG-AAGGTTA
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
* *
961079 AATACCCTTGATTAAA
66 AATACCTTTGAGTAAA
* * *
961095 AGAATAATGGCCTAGCTGGGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTA
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
961160 AATACCTTTGAGTAAA
66 AATACCTTTGAGTAAA
* * * **
961176 AGACTAATGGTCTAGCTGTGCATTTGGAAGAATTGTGTCAATTATGCCAGTTAGATGAAAGGTTA
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
961241 AATACCTTTGAGTAAA
66 AATACCTTTGAGTAAA
* * *
961257 ATATTAATGGCCTAGCTGTGCATTTGGCATAAAGGTGTCAATTATGCCAGTTAGATGAAATGTTA
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
961322 AATACCTTTGAGTAAA
66 AATACCTTTGAGTAAA
* * **
961338 AGATTAATGGCCTAGCTTTGCATTTGACAGAAATATGTCAATTATGCCAGTTAGATGAAAGGTTA
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
961403 AATACCTTTGAGTAAA
66 AATACCTTTGAGTAAA
* ** *
961419 AGATTAATGGCCTACCTGTATATTTGGCAGAAAGGTGTCAATTATGCCAAG-TAGATGGAAGGTT
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCC-AGTTAGATGAAAGGTT
961483 AAATACCTTTGAGTAAA
65 AAATACCTTTGAGTAAA
* *
961500 ATGATTAATGGCTTA-CATGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAAAGGT
1 A-GATTAATGGCCTAGC-TGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGT
961564 TAAATACCTTTGAGTAAA
64 TAAATACCTTTGAGTAAA
* * * * * *
961582 AGATTAATAGCCTACCTGTGTATTTGGAAGAAAGGTGTCAATTATGTCAATTAGATGAAAGGTTA
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
961647 AATACCTTTGAGTAAA
66 AATACCTTTGAGTAAA
* * * ** * *
961663 AGATTAATGGTCTAGCTATGAATTTGATAGAAAGGTGTCAATTATGCCAGTTAGATTAATGGTTA
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
961728 AATACCTTTGAGTAAA
66 AATACCTTTGAGTAAA
* ** ** * * * *
961744 AGACTAAAAGCCTAATTGTGCCTTTGGTAGAAAGGTGTCAATCATGCCAGTTAGATGATAGGTTA
1 AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
*
961809 AATACCTTTGGGTAAA
66 AATACCTTTGAGTAAA
* * * * * * * * *
961825 AGACTAAAT-GTCTAACGGTGCATTTGGCAGAAAGATGCCAATAATGCAAGTTGGATGAA
1 AGA-TTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAA
961884 GGACAAATTG
Statistics
Matches: 698, Mismatches: 84, Indels: 13
0.88 0.11 0.02
Matches are distributed among these distances:
80 53 0.08
81 568 0.81
82 77 0.11
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (81 bp):
AGATTAATGGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTA
AATACCTTTGAGTAAA
Found at i:961852 original size:406 final size:404
Alignment explanation
Indices: 961033--961885 Score: 1169
Period size: 406 Copynumber: 2.1 Consensus size: 404
961023 GGCCTAGGTA
* *
961033 TGCATTTGGCAGAAATGTGTCAATTATGCC-AGTTAGATGAAGGTTAAATACCCTTGATTAAAAG
1 TGCATTTGGCAGAAAGGTGTCAATTATGCCAAG-TAGATGAAGGTTAAATACCCTTGAGTAAAAG
* *
961097 AATAATGGCCTAGCTGGGCATTTGGCAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAA
65 AATAATGGCCTAGCTGGGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAAAGGTTAAA
* * * ** *
961162 TACCTTTGAGTAAAAGACTAATGGTCTAGCTGTGCATTTGGAAGAATTGTGTCAATTATGCCAGT
130 TACCTTTGAGTAAAAGACTAATAGCCTACCTGTGCATTTGGAAGAAAGGTGTCAATTATGCCAAT
* * * * *
961227 TAGATGAAAGGTTAAATACCTTTGAGTAAAATATTAATGGCCTAGCTGTGCATTTGGCATAAAGG
195 TAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAGCTATGAATTTGACAGAAAGG
* ** *
961292 TGTCAATTATGCCAGTTAGATGAAATGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAGCTTT
260 TGTCAATTATGCCAGTTAGATGAAATGTTAAATACCTTTGAGTAAAAGACTAAAAGCCTAGATTT
* *
961357 GCATTTGACAGAAATATGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGA
325 GCATTTGACAGAAAGATGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGA
* * *
961422 TTAATGGCCTACCTG
390 TAAATGGCCTAACGG
** *
961437 TATATTTGGCAGAAAGGTGTCAATTATGCCAAGTAGATGGAAGGTTAAATACCTTTGAGTAAAAT
1 TGCATTTGGCAGAAAGGTGTCAATTATGCCAAGTAGAT-GAAGGTTAAATACCCTTGAGTAAAA-
* * *
961502 GATTAATGGCTTA-CATGTGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAAAGGTTA
64 GAATAATGGCCTAGC-TGGGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAAAGGTTA
* * *
961566 AATACCTTTGAGTAAAAGATTAATAGCCTACCTGTGTATTTGGAAGAAAGGTGTCAATTATGTCA
128 AATACCTTTGAGTAAAAGACTAATAGCCTACCTGTGCATTTGGAAGAAAGGTGTCAATTATGCCA
* *
961631 ATTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGGTCTAGCTATGAATTTGATAGAAA
193 ATTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAGCTATGAATTTGACAGAAA
*
961696 GGTGTCAATTATGCCAGTTAGAT-TAATGGTTAAATACCTTTGAGTAAAAGACTAAAAGCCTA-A
258 GGTGTCAATTATGCCAGTTAGATGAAAT-GTTAAATACCTTTGAGTAAAAGACTAAAAGCCTAGA
* ** * * *
961759 TTGTGCCTTTGGTAGAAAGGTGTCAATCATGCCAGTTAGATGATAGGTTAAATACCTTTGGGTAA
322 TT-TGCATTTGACAGAAAGATGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAA
*
961824 AAGACTAAAT-GTCTAACGG
386 AAGA-TAAATGGCCTAACGG
* * * *
961843 TGCATTTGGCAGAAAGATGCCAATAATG-CAAGTTGGATGAAGG
1 TGCATTTGGCAGAAAGGTGTCAATTATGCCAAG-TAGATGAAGG
961886 ACAAATTGTT
Statistics
Matches: 392, Mismatches: 49, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
404 32 0.08
405 40 0.10
406 316 0.81
407 4 0.01
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.31
Consensus pattern (404 bp):
TGCATTTGGCAGAAAGGTGTCAATTATGCCAAGTAGATGAAGGTTAAATACCCTTGAGTAAAAGA
ATAATGGCCTAGCTGGGCATTTGGCAGAAAGGTGTCAATTATGCCAATTAGATGAAAGGTTAAAT
ACCTTTGAGTAAAAGACTAATAGCCTACCTGTGCATTTGGAAGAAAGGTGTCAATTATGCCAATT
AGATGAAAGGTTAAATACCTTTGAGTAAAAGATTAATGGCCTAGCTATGAATTTGACAGAAAGGT
GTCAATTATGCCAGTTAGATGAAATGTTAAATACCTTTGAGTAAAAGACTAAAAGCCTAGATTTG
CATTTGACAGAAAGATGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGAT
AAATGGCCTAACGG
Found at i:961987 original size:2 final size:2
Alignment explanation
Indices: 961980--962014 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
961970 CCATAAAGGA
961980 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
962015 ACAATGCATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:967412 original size:15 final size:17
Alignment explanation
Indices: 967382--967420 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
967372 TTGTTTTCCA
967382 TTTTTTCTTTCATGTCT-
1 TTTTTTCTTT-ATGTCTC
967399 TTTTTTCTTT-TGTCTC
1 TTTTTTCTTTATGTCTC
967415 TTTTTT
1 TTTTTT
967421 TTCGAACATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 6 0.29
17 10 0.48
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.77
Consensus pattern (17 bp):
TTTTTTCTTTATGTCTC
Found at i:968660 original size:6 final size:6
Alignment explanation
Indices: 968649--968675 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
968639 CGGTTCCTGC
968649 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
968676 TGCTTGAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:971202 original size:19 final size:19
Alignment explanation
Indices: 971178--971216 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
971168 TCGAATGCAT
971178 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
971197 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
971216 T
1 T
971217 GAATACTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:971324 original size:64 final size:65
Alignment explanation
Indices: 971164--971324 Score: 200
Period size: 65 Copynumber: 2.5 Consensus size: 65
971154 GAATTAATTG
* * *** *
971164 AACATCGAATGCATTCCATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATACTTTCAA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATACTTTCAA
* ** *
971229 AACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCAC-CAGGCTATTTTTC-
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATA-CTTTCA
971292 A
65 A
*
971293 AACATCGAATGAATTTCATGCATCGATGCACA
1 AACATCGAATGCATTTCATGCATCGATGCACA
971325 CTTGGTGCAC
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
64 35 0.42
65 48 0.58
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (65 bp):
AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCAGAATACTTTCAA
Found at i:977423 original size:18 final size:20
Alignment explanation
Indices: 977386--977426 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
977376 ACTCCGGGAG
977386 CTAGTTCTTCTCGAGCTGCTC
1 CTAGTTCTTCTC-AGCTGCTC
977407 CTAGTTCTTCTC-G-TGCTC
1 CTAGTTCTTCTCAGCTGCTC
977425 CT
1 CT
977427 CGTCCTCCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 1 0.05
21 12 0.60
ACGTcount: A:0.07, C:0.34, G:0.17, T:0.41
Consensus pattern (20 bp):
CTAGTTCTTCTCAGCTGCTC
Found at i:978263 original size:20 final size:20
Alignment explanation
Indices: 978226--978263 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
978216 AAATTAAGTT
*
978226 AAATGAATTTTAAGATTTTA
1 AAATGAATTTTAAAATTTTA
978246 AAATG-ATTTTACAAATTT
1 AAATGAATTTTA-AAATTT
978264 ATATTCGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.45
Consensus pattern (20 bp):
AAATGAATTTTAAAATTTTA
Found at i:978519 original size:19 final size:19
Alignment explanation
Indices: 978495--978533 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
978485 TCGAATGCAT
978495 TCCATGCACCGATGCACTC
1 TCCATGCACCGATGCACTC
*
978514 TCCATGCATCGATGCACTC
1 TCCATGCACCGATGCACTC
978533 T
1 T
978534 GAATACTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.38, G:0.15, T:0.26
Consensus pattern (19 bp):
TCCATGCACCGATGCACTC
Found at i:978550 original size:65 final size:63
Alignment explanation
Indices: 978432--978640 Score: 183
Period size: 65 Copynumber: 3.2 Consensus size: 63
978422 TATTCAAAGG
* *
978432 CATGCACCGATGCA-TCAGTCCATGCATCGATGCA-TCGATGAATTAATT-GAACATCGAATGCA
1 CATGCACCGATGCACTC--TCCATGCATCGATGCACTC--TGAA-TATTTCAAACATCGAATGCA
*
978494 TTC
61 TTT
*
978497 CATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATACTTTCAAAACATCGAATTCATTT
1 CATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATA-TTTC-AAACATCGAATGCATTT
* * * *** * * *
978562 GATACATCGATGCACAAGCCATGCATCGATGCAC-CAGGCTATTTTTCAAACATCGAATGCATTT
1 CATGCACCGATGCACTCTCCATGCATCGATGCACTC-TG-AATATTTCAAACATCGAATGCATTT
*
978626 CATGCATCGATGCAC
1 CATGCACCGATGCAC
978641 ACTTGGTGCA
Statistics
Matches: 121, Mismatches: 16, Indels: 15
0.80 0.11 0.10
Matches are distributed among these distances:
62 2 0.02
63 6 0.05
64 46 0.38
65 63 0.52
66 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (63 bp):
CATGCACCGATGCACTCTCCATGCATCGATGCACTCTGAATATTTCAAACATCGAATGCATTT
Found at i:980720 original size:23 final size:22
Alignment explanation
Indices: 980693--980736 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
980683 CTTGAAAAAT
980693 AAAAGAAAAATGAAAAGAACTTG
1 AAAAGAAAAATGAAAA-AACTTG
* *
980716 AAAAGTAAAATGAGAAAACTT
1 AAAAGAAAAATGAAAAAACTT
980737 TTATAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.64, C:0.05, G:0.16, T:0.16
Consensus pattern (22 bp):
AAAAGAAAAATGAAAAAACTTG
Found at i:981485 original size:163 final size:162
Alignment explanation
Indices: 981202--981589 Score: 591
Period size: 163 Copynumber: 2.4 Consensus size: 162
981192 ACACTCATCA
* *
981202 ATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATT
1 ATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATT
* * * * *
981267 AATGGCCTACCTGTACATTTGACATAAATGTGTCGATTATGCCAGTTTGATGAAAGGTTAAATAC
66 AATGGCCTACCTATACATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGATTAAATAC
981332 CTTTGAGTAAAATGATTAATGGCCTACCTGTGC
131 CTTTGAGTAAAA-GATTAATGGCCTACCTGTGC
*
981365 ATTTGGA-AAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACATTTGAGTAAAAGAT
1 ATTT-GACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGAT
* * **
981429 TAATGGCCTAGCTATGCATTTGGTAGAAA-GCTGTCAATTATGCCAGTTAGATGAAAGATTAAAT
65 TAATGGCCTACCTATACATTTGACAGAAATG-TGTCAATTATGCCAGTTAGATGAAAGATTAAAT
*
981493 ACCTTTGAGTAAAAGATTAATGGCCTAGCTGTGC
129 ACCTTTGAGTAAAAGATTAATGGCCTACCTGTGC
* * *
981527 ATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGGGTAAAAGA
1 ATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGA
981590 CTAAATGTAT
Statistics
Matches: 205, Mismatches: 17, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
161 2 0.01
162 76 0.37
163 125 0.61
164 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (162 bp):
ATTTGACAAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATT
AATGGCCTACCTATACATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGATTAAATAC
CTTTGAGTAAAAGATTAATGGCCTACCTGTGC
Found at i:981611 original size:81 final size:81
Alignment explanation
Indices: 981202--981589 Score: 609
Period size: 81 Copynumber: 4.8 Consensus size: 81
981192 ACACTCATCA
981202 ATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATT
1 ATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATT
*
981267 AATGGCCTACCTGTAC
66 AATGGCCTACCTGTGC
* * *
981283 ATTTGACATAAATGTGTCGATTATGCCAGTTTGATGAAAGGTTAAATACCTTTGAGTAAAATGAT
1 ATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAA-GAT
981348 TAATGGCCTACCTGTGC
65 TAATGGCCTACCTGTGC
* * *
981365 ATTTGGA-AAAAAGGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACATTTGAGTAAAAGAT
1 ATTT-GACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGAT
* *
981429 TAATGGCCTAGCTATGC
65 TAATGGCCTACCTGTGC
** *
981446 ATTTGGTAGAAA-GCTGTCAATTATGCCAGTTAGATGAAAGATTAAATACCTTTGAGTAAAAGAT
1 ATTTGACAGAAATG-TGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGAT
*
981510 TAATGGCCTAGCTGTGC
65 TAATGGCCTACCTGTGC
*
981527 ATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGGGTAAAAGA
1 ATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGA
981590 CTAAATGTAT
Statistics
Matches: 282, Mismatches: 20, Indels: 10
0.90 0.06 0.03
Matches are distributed among these distances:
80 2 0.01
81 205 0.73
82 73 0.26
83 2 0.01
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (81 bp):
ATTTGACAGAAATGTGTCAATTATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGATT
AATGGCCTACCTGTGC
Found at i:981749 original size:2 final size:2
Alignment explanation
Indices: 981742--981804 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
981732 CTATAAAGGA
981742 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
981784 AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT A
981805 ATAGTGCATA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:996083 original size:15 final size:15
Alignment explanation
Indices: 996063--996114 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
996053 GCAGTCACCA
996063 AGTCAACTCGGTCCG
1 AGTCAACTCGGTCCG
996078 AGTCAAC-CTGGTCCG
1 AGTCAACTC-GGTCCG
* *
996093 AGTCAACTCGATCTG
1 AGTCAACTCGGTCCG
996108 AGTCAAC
1 AGTCAAC
996115 CTATAACTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 1 0.03
15 31 0.94
16 1 0.03
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (15 bp):
AGTCAACTCGGTCCG
Found at i:1000509 original size:15 final size:15
Alignment explanation
Indices: 1000461--1000510 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
1000451 CCATTCACCG
*
1000461 AGTCAACTCGGTCTA
1 AGTCAACTCAGTCTA
* *
1000476 AGTAAAC-CTA-TCCA
1 AGTCAACTC-AGTCTA
1000490 AGTCAACTCAGTCTA
1 AGTCAACTCAGTCTA
1000505 AGTCAA
1 AGTCAA
1000511 AGTCACCGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 6
0.71 0.13 0.16
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.36, C:0.26, G:0.14, T:0.24
Consensus pattern (15 bp):
AGTCAACTCAGTCTA
Found at i:1005199 original size:75 final size:76
Alignment explanation
Indices: 1004991--1005197 Score: 274
Period size: 75 Copynumber: 2.7 Consensus size: 76
1004981 CAAAGCCAAA
* * * **
1004991 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCCATAGGAGGAACCGATTCCCCCTAAATGGT
1 AATTCCAGAATGCTCGGAGGGAACCGA-TCCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGT
1005056 TTTGGCCCCGAG
65 TTTGGCCCCGAG
* * * *
1005068 ATTTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATTGGTGGAACCGATTCCCCCTAAACAGTT
1 AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTT
*
1005133 TT-GCTCCGAG
66 TTGGCCCCGAG
* * *
1005143 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCC
1 AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCC
1005198 CTTGTACAAC
Statistics
Matches: 114, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
74 16 0.14
75 40 0.35
76 35 0.31
77 23 0.20
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (76 bp):
AATTCCAGAATGCTCGGAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCTAAACAGTT
TTGGCCCCGAG
Found at i:1011022 original size:21 final size:21
Alignment explanation
Indices: 1010996--1011035 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1010986 CCCCCTTTGA
*
1010996 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
1011017 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
1011036 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:1012972 original size:17 final size:17
Alignment explanation
Indices: 1012950--1012997 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
1012940 TTTCAACATT
1012950 TTTGATATTTTGGATTG
1 TTTGATATTTTGGATTG
1012967 TTTGAT-TTTGTGGATTG
1 TTTGATATTT-TGGATTG
*
1012984 -TTG-GATTTTGGATT
1 TTTGATATTTTGGATT
1012998 TATGAATAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
15 6 0.21
16 9 0.32
17 13 0.46
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (17 bp):
TTTGATATTTTGGATTG
Found at i:1013741 original size:76 final size:77
Alignment explanation
Indices: 1013575--1013784 Score: 307
Period size: 77 Copynumber: 2.8 Consensus size: 77
1013565 CAAAGCCAAA
* * * **
1013575 AATTACAGATTGCTCAGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAATGGT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
1013640 TTTGGCCCCGAG
66 TTTGGCCCCGAG
*
1013652 ATTTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
*
1013717 TTT-GCTCCGAG
66 TTTGGCCCCGAG
* * * *
1013728 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCCCT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCT
1013785 TGTACAACGG
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
75 19 0.16
76 40 0.33
77 62 0.51
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.20
Consensus pattern (77 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
TTTGGCCCCGAG
Found at i:1015188 original size:22 final size:23
Alignment explanation
Indices: 1015145--1015189 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
1015135 CCTGGTGTTC
* *
1015145 TTTATTTTTTCCTTTTCGATAATG
1 TTTATTTTTT-CTTATCAATAATG
1015169 TTTATTTTTT-TTATCAATAAT
1 TTTATTTTTTCTTATCAATAAT
1015190 CATTGTTCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 9 0.47
24 10 0.53
ACGTcount: A:0.22, C:0.09, G:0.04, T:0.64
Consensus pattern (23 bp):
TTTATTTTTTCTTATCAATAATG
Found at i:1015506 original size:43 final size:43
Alignment explanation
Indices: 1015357--1015728 Score: 233
Period size: 43 Copynumber: 8.7 Consensus size: 43
1015347 ATTTTTTCAT
* * * * *
1015357 CTTTATAATT-AGGTCCTTAATTTTTTAAATCT-TATTTTTCAC
1 CTTTATAATTGAGGCCCCTAATTTTTTCAATCTCAATTTCT-AC
* * * *
1015399 CTTTATAATTGAGG-TCCTAATATTATTCAATCT-AAGTTTTTAT
1 CTTTATAATTGAGGCCCCTAAT-TTTTTCAATCTCAA-TTTCTAC
* * *** * ** *
1015442 ATTTATAATTAAAATCTCTAATTTTTTTCAATC-CCCTTTTTAC
1 CTTTATAATTGAGGCCCCTAA-TTTTTTCAATCTCAATTTCTAC
* * *
1015485 CTTTATAATTGAGGCCCCTAATTTTGT-AATCTCACTTT-TAA
1 CTTTATAATTGAGGCCCCTAATTTTTTCAATCTCAATTTCTAC
*** * *
1015526 CTTTATAATTGAGGCTTTTAAGTTTTTCAATCTCACTTTCTAC
1 CTTTATAATTGAGGCCCCTAATTTTTTCAATCTCAATTTCTAC
* * * * *
1015569 CTTT-CAATTAAGACCTCTATGTTTTTTCAATCTCAATTTCTAC
1 CTTTATAATTGAGGCCCCTA-ATTTTTTCAATCTCAATTTCTAC
* ** * * *
1015612 CTTTATAATTGAGGCCCATAAGAATTTTCGATCTCAA-CTATAC
1 CTTTATAATTGAGGCCCCTAA-TTTTTTCAATCTCAATTTCTAC
* * *
1015655 CTTTATAATTGAGACCCAT-ATTTTTTCAATCTCAATTTGTAC
1 CTTTATAATTGAGGCCCCTAATTTTTTCAATCTCAATTTCTAC
* *
1015697 CTTTATAATTAAGGCCTCTAATTTTTTACAAT
1 CTTTATAATTGAGGCCCCTAATTTTTT-CAAT
1015729 TTCAGAAAAT
Statistics
Matches: 255, Mismatches: 60, Indels: 28
0.74 0.17 0.08
Matches are distributed among these distances:
41 40 0.16
42 66 0.26
43 104 0.41
44 44 0.17
45 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (43 bp):
CTTTATAATTGAGGCCCCTAATTTTTTCAATCTCAATTTCTAC
Found at i:1015702 original size:85 final size:83
Alignment explanation
Indices: 1015482--1015712 Score: 234
Period size: 85 Copynumber: 2.7 Consensus size: 83
1015472 ATCCCCTTTT
* * * * * ***
1015482 TACCTTTATAATTGAGGCCCCTAATTTTGT-AATCTCACTTTTAACTTTATAATTGAGGCTTTTA
1 TACCTTTATAATTGAGACCCAT-ATTTTTTCAATCTCAATTTTACCTTTATAATTGAGGCCCATA
* *
1015546 AGTTTTTCAATCTCACTTTC
65 AGATTTTCAATCTCAC-TTA
* * *
1015566 TACCTTT-CAATTAAGACCTCTATGTTTTTTCAATCTCAATTTCTACCTTTATAATTGAGGCCCA
1 TACCTTTATAATTGAGACC-C-ATATTTTTTCAATCTCAATTT-TACCTTTATAATTGAGGCCCA
*
1015630 TAAGAATTTTCGATCTCAAC-TA
63 TAAG-ATTTTCAATCTC-ACTTA
*
1015652 TACCTTTATAATTGAGACCCATATTTTTTCAATCTCAATTTGTACCTTTATAATTAAGGCC
1 TACCTTTATAATTGAGACCCATATTTTTTCAATCTCAATTT-TACCTTTATAATTGAGGCC
1015713 TCTAATTTTT
Statistics
Matches: 121, Mismatches: 19, Indels: 13
0.79 0.12 0.08
Matches are distributed among these distances:
83 8 0.07
84 13 0.11
85 49 0.40
86 30 0.25
87 19 0.16
88 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.09, T:0.43
Consensus pattern (83 bp):
TACCTTTATAATTGAGACCCATATTTTTTCAATCTCAATTTTACCTTTATAATTGAGGCCCATAA
GATTTTCAATCTCACTTA
Found at i:1016503 original size:20 final size:20
Alignment explanation
Indices: 1016478--1016519 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
1016468 TATTGTATAA
1016478 GAAACAAAACATAGTAGTTT
1 GAAACAAAACATAGTAGTTT
1016498 GAAACAAAACATAGTAGTTT
1 GAAACAAAACATAGTAGTTT
1016518 GA
1 GA
1016520 CGTTCAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.24
Consensus pattern (20 bp):
GAAACAAAACATAGTAGTTT
Found at i:1019346 original size:28 final size:28
Alignment explanation
Indices: 1019296--1019394 Score: 90
Period size: 29 Copynumber: 3.5 Consensus size: 28
1019286 GAGTCTAAAT
*
1019296 TTTTTATAAATTATTACAAAGGACAAAAC
1 TTTTTATAAATTATTA-TAAGGACAAAAC
* *
1019325 TTTTTATAAATTATTATAAGGACAGAGC
1 TTTTTATAAATTATTATAAGGACAAAAC
* * * * *
1019353 TTTGTGTAAATTACTATGAATGACAACAC
1 TTTTTATAAATTATTAT-AAGGACAAAAC
* *
1019382 CTTTTGTAAATTA
1 TTTTTATAAATTA
1019395 CAATAACCCC
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 23 0.40
29 34 0.60
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.38
Consensus pattern (28 bp):
TTTTTATAAATTATTATAAGGACAAAAC
Found at i:1025232 original size:21 final size:19
Alignment explanation
Indices: 1025190--1025227 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
1025180 GAAAAAAGTA
1025190 TATTAAAATTAATATATTT
1 TATTAAAATTAATATATTT
1025209 TATTAAAATATAA-ATATTT
1 TATTAAAAT-TAATATATTT
1025228 CTTATATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAAAATTAATATATTT
Found at i:1026172 original size:15 final size:15
Alignment explanation
Indices: 1026148--1026188 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
1026138 CTTTTTAGGG
*
1026148 TTTTTGGCCATATCA
1 TTTTTAGCCATATCA
1026163 TTTTTAGCCATATCA
1 TTTTTAGCCATATCA
1026178 TTTTTAGCCAT
1 TTTTTAGCCAT
1026189 TCTAGGCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.49
Consensus pattern (15 bp):
TTTTTAGCCATATCA
Found at i:1026982 original size:60 final size:60
Alignment explanation
Indices: 1026888--1027109 Score: 201
Period size: 52 Copynumber: 4.0 Consensus size: 60
1026878 TATGAAGAAA
* * *
1026888 AGTTAAATGCCTAACTGTGCATATTGGTATAAAGGTGCCATTAATGCAAGTTAGATGATC
1 AGTTAAATGCCTAACTATGCATATTGGTAGAAAGGTGCCAATAATGCAAGTTAGATGATC
*
1026948 AGTTAAATGCCTAACTATGCATATTGGCT-GAAAGGTGTCAATAATGCAAGTT--A-GAT-
1 AGTTAAATGCCTAACTATGCATATTGG-TAGAAAGGTGCCAATAATGCAAGTTAGATGATC
* * * *
1027004 -G--AAAGGCCTAGA-TGTGCAT-TTGGCAAAAAGGTGCCAATAATGCAAGTT--A-GAT-
1 AGTTAAATGCCTA-ACTATGCATATTGGTAGAAAGGTGCCAATAATGCAAGTTAGATGATC
* * *
1027056 A---AAAGGCCTAACTATGCAT-TTGGTAGAAATGTACCAATAATGCAAGTTAGATGA
1 AGTTAAATGCCTAACTATGCATATTGGTAGAAAGGTGCCAATAATGCAAGTTAGATGA
1027110 AAGGGCTAAC
Statistics
Matches: 140, Mismatches: 14, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
51 1 0.01
52 69 0.49
53 14 0.10
54 2 0.01
55 3 0.02
57 3 0.02
58 1 0.01
60 46 0.33
61 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (60 bp):
AGTTAAATGCCTAACTATGCATATTGGTAGAAAGGTGCCAATAATGCAAGTTAGATGATC
Found at i:1027034 original size:52 final size:52
Alignment explanation
Indices: 1026956--1027211 Score: 288
Period size: 52 Copynumber: 5.0 Consensus size: 52
1026946 TCAGTTAAAT
* * *
1026956 GCCTAACTATGCATATTGGCTGAAAGGTGTCAATAATGCAAGTTAGATGAAAG
1 GCCTAACTGTGCAT-TTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
* *
1027009 GCCTAGA-TGTGCATTTGGCAAAAAGGTGCCAATAATGCAAGTTAGATAAAAG
1 GCCTA-ACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
* * * *
1027061 GCCTAACTATGCATTTGGTAGAAATGTACCAATAATGCAAGTTAGATGAAAG
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
* * * * * *
1027113 GGCTAACTGTGCATTAGGCAGAAAGGTTCCAATAATG-AA-AT-G-TTAAAT
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
** * *
1027161 TTCTAACTGTACATTTGGCAGAAAGGTGCCACTAATGCAAGTTAGATGAAA
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
1027212 AATAATGTAT
Statistics
Matches: 169, Mismatches: 28, Indels: 13
0.80 0.13 0.06
Matches are distributed among these distances:
48 35 0.21
49 3 0.02
50 2 0.01
51 4 0.02
52 113 0.67
53 11 0.07
54 1 0.01
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (52 bp):
GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
Found at i:1032980 original size:52 final size:52
Alignment explanation
Indices: 1032894--1033264 Score: 481
Period size: 52 Copynumber: 7.0 Consensus size: 52
1032884 TTAGTTAAAT
* * *
1032894 GCCTAAATGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAG
1 GCCTAACTGTGCAT-TTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
* *
1032947 GCCTAATTGTGCATTTGGCAGGAAGGTGCCAATAATGCAAGTTAGATGAAAG
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
* *
1032999 GCCTAACTTTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
*
1033051 GCCTAACTGTGCATTTGGCATAAAGGTGCCAATAATGCAAGTTAGATGAAAG
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
* * * * *
1033103 GCCTAACTATGGATTTGGTAGAAAGGTGTCAATAATGCAAGTTAGATGAAAT
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
* * *
1033155 GCCTAACTGTGCATTTGGAAGAAAGGTGTCAATAATGCAAGTTAAATGAAATGTTAAAT
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTT--A-G--ATG--AAAG
* * * * *
1033214 GCTTAATTGTGCATTTGGCAGAATGGTGCCACTAATGTAAGTTAGATGAAA
1 GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAA
1033265 AACAGTGTAT
Statistics
Matches: 284, Mismatches: 27, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
52 221 0.78
53 13 0.05
54 4 0.01
55 1 0.00
56 1 0.00
57 4 0.01
59 40 0.14
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (52 bp):
GCCTAACTGTGCATTTGGCAGAAAGGTGCCAATAATGCAAGTTAGATGAAAG
Found at i:1033146 original size:156 final size:159
Alignment explanation
Indices: 1032836--1033264 Score: 558
Period size: 156 Copynumber: 2.7 Consensus size: 159
1032826 AGTTACATGT
* * *
1032836 CTAATTGTGCATATTGGCAGAAAGGTGCCATTAATGCAAGTTAGATGATTAGTTAAATGCCTAAA
1 CTAACTGTGCAT-TTGGAAGAAAGGTGCCAATAATGCAAGTTA-ATGA-T-G-TAAATGCCTAAA
* * *
1032901 TGTGCATATTGGCATAAAGGTGTCAATAATGCAAGTTAGATGAAAGGCCTAATTGTGCATTTGGC
61 TGTGCAT-TTGGCATAAAGGTGCCAATAATGCAAGTTAGATGAAAGGCCTAACTATGCATTTGGC
*
1032966 AGGAAGGTGCCAATAATGCAAGTTAGATGAAAGGC
125 AGAAAGGTGCCAATAATGCAAGTTAGATGAAAGGC
* * *
1033001 CTAACTTTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTT-A-GATG-AAAGGCCTAACTGTGC
1 CTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAATGATGTAAATGCCTAAATGTGC
* *
1033063 ATTTGGCATAAAGGTGCCAATAATGCAAGTTAGATGAAAGGCCTAACTATGGATTTGGTAGAAAG
66 ATTTGGCATAAAGGTGCCAATAATGCAAGTTAGATGAAAGGCCTAACTATGCATTTGGCAGAAAG
* *
1033128 GTGTCAATAATGCAAGTTAGATGAAATGC
131 GTGCCAATAATGCAAGTTAGATGAAAGGC
* * *
1033157 CTAACTGTGCATTTGGAAGAAAGGTGTCAATAATGCAAGTTAAATGAAATGTTAAATGCTTAATT
1 CTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTT-AATG--ATG-TAAATGCCTAAAT
* * * *
1033222 GTGCATTTGGCAGAATGGTGCCACTAATGTAAGTTAGATGAAA
62 GTGCATTTGGCATAAAGGTGCCAATAATGCAAGTTAGATGAAA
1033265 AACAGTGTAT
Statistics
Matches: 234, Mismatches: 23, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
156 123 0.53
157 16 0.07
158 1 0.00
159 2 0.01
160 1 0.00
161 5 0.02
162 1 0.00
163 48 0.21
164 27 0.12
165 10 0.04
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (159 bp):
CTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAATGATGTAAATGCCTAAATGTGC
ATTTGGCATAAAGGTGCCAATAATGCAAGTTAGATGAAAGGCCTAACTATGCATTTGGCAGAAAG
GTGCCAATAATGCAAGTTAGATGAAAGGC
Found at i:1033250 original size:59 final size:59
Alignment explanation
Indices: 1033151--1033264 Score: 156
Period size: 59 Copynumber: 1.9 Consensus size: 59
1033141 AAGTTAGATG
*
1033151 AAATGCCTAACTGTGCATTTGGAAGAAAGGTGTCAATAATGCAAGTTAAATGAAATGTT
1 AAATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAAATGAAATGTT
* * * * * * *
1033210 AAATGCTTAATTGTGCATTTGGCAGAATGGTGCCACTAATGTAAGTTAGATGAAA
1 AAATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAAATGAAA
1033265 AACAGTGTAT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 47 1.00
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (59 bp):
AAATGCCTAACTGTGCATTTGGAAGAAAGGTGCCAATAATGCAAGTTAAATGAAATGTT
Found at i:1035040 original size:22 final size:23
Alignment explanation
Indices: 1034901--1035022 Score: 131
Period size: 23 Copynumber: 5.3 Consensus size: 23
1034891 CGAAGTGCCG
1034901 CGTAGAATATG-CACCGAA-GAGCCA
1 CGTAGAA-ATGTC-CCGAAGGA-CCA
* * *
1034925 CATAGAAATGTTCCAAAGGACCA
1 CGTAGAAATGTCCCGAAGGACCA
* * * * *
1034948 CATAGTACTGTCCCTAATGACCA
1 CGTAGAAATGTCCCGAAGGACCA
1034971 CGTAGAAATGTCCCGAAGGACCA
1 CGTAGAAATGTCCCGAAGGACCA
1034994 CGTAGAAATGTCCCGAAGGACCA
1 CGTAGAAATGTCCCGAAGGACCA
1035017 CGTAGA
1 CGTAGA
1035023 TTTTCTCGAA
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
23 75 0.90
24 8 0.10
ACGTcount: A:0.36, C:0.25, G:0.22, T:0.16
Consensus pattern (23 bp):
CGTAGAAATGTCCCGAAGGACCA
Found at i:1042061 original size:23 final size:23
Alignment explanation
Indices: 1042035--1042094 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
1042025 CATAAAAATA
* *
1042035 TCCCGAAGGACCACATAGTATTG
1 TCCCAAAGGACCACATAGTAATG
* **
1042058 TCCCAAATGACCGTATAGTAATG
1 TCCCAAAGGACCACATAGTAATG
1042081 TCCCAAAGGACCAC
1 TCCCAAAGGACCAC
1042095 GTAGATTTTT
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.20
Consensus pattern (23 bp):
TCCCAAAGGACCACATAGTAATG
Found at i:1045494 original size:30 final size:29
Alignment explanation
Indices: 1045453--1045556 Score: 93
Period size: 30 Copynumber: 3.4 Consensus size: 29
1045443 TAGGTGAGAT
* *
1045453 AAAA-TTTTGTTTCGAGTGAAACAATTTC
1 AAAAGTTTTGTTTCGAGAGAAACAATCTC
* *
1045481 AAAAGTTTATGTTTCAAGAGAAACTATCTC
1 AAAAGTTT-TGTTTCGAGAGAAACAATCTC
* *
1045511 AAGCGAGACTTTGTTTCGAGAGAAACAATCTC
1 AA--AAG-TTTTGTTTCGAGAGAAACAATCTC
*
1045543 AAAGGTTTATGTTT
1 AAAAGTTT-TGTTT
1045557 AAAGCGAAAC
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
28 4 0.07
29 5 0.08
30 25 0.42
32 23 0.39
33 2 0.03
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (29 bp):
AAAAGTTTTGTTTCGAGAGAAACAATCTC
Found at i:1045539 original size:62 final size:62
Alignment explanation
Indices: 1045458--1045574 Score: 180
Period size: 62 Copynumber: 1.9 Consensus size: 62
1045448 GAGATAAAAT
* * *
1045458 TTTGTTTCGAGTGAAACAATTTCAAAAGTTTATGTTTCAAGAGAAACTATCTCAAGCGAGAC
1 TTTGTTTCGAGAGAAACAATCTCAAAAGTTTATGTTTAAAGAGAAACTATCTCAAGCGAGAC
* * *
1045520 TTTGTTTCGAGAGAAACAATCTCAAAGGTTTATGTTTAAAGCGAAACTGTCTCAA
1 TTTGTTTCGAGAGAAACAATCTCAAAAGTTTATGTTTAAAGAGAAACTATCTCAA
1045575 ACAAGACAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 49 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (62 bp):
TTTGTTTCGAGAGAAACAATCTCAAAAGTTTATGTTTAAAGAGAAACTATCTCAAGCGAGAC
Found at i:1045566 original size:30 final size:30
Alignment explanation
Indices: 1045460--1045575 Score: 90
Period size: 30 Copynumber: 3.8 Consensus size: 30
1045450 GATAAAATTT
* * * *
1045460 TGTTTCGAGTGAAACAATTTCAAAAGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
* **
1045490 TGTTTCAAGAGAAACTATCTCAAGCGAGACTT-
1 TGTTTCAAGAGAAACAATCTCAA---AGGTTTA
*
1045522 TGTTTCGAGAGAAACAATCTCAAAGGTTTA
1 TGTTTCAAGAGAAACAATCTCAAAGGTTTA
* * **
1045552 TGTTTAAAGCGAAACTGTCTCAAA
1 TGTTTCAAGAGAAACAATCTCAAA
1045576 CAAGACAAAA
Statistics
Matches: 66, Mismatches: 16, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
29 4 0.06
30 38 0.58
32 21 0.32
33 3 0.05
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (30 bp):
TGTTTCAAGAGAAACAATCTCAAAGGTTTA
Found at i:1049602 original size:23 final size:23
Alignment explanation
Indices: 1049575--1049626 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
1049565 CTGAGTTGCG
*
1049575 TATGAAAT-TTGTCCCTAAGGACC
1 TATGAAATATT-TCCCGAAGGACC
1049598 TATG-AATATTTCCCGAAGGACC
1 TATGAAATATTTCCCGAAGGACC
1049620 TATGAAA
1 TATGAAA
1049627 CCCTCGACTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 18 0.69
23 8 0.31
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (23 bp):
TATGAAATATTTCCCGAAGGACC
Found at i:1054457 original size:15 final size:16
Alignment explanation
Indices: 1054434--1054472 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
1054424 TTTATTAATC
1054434 TAAAAAAA-CTAAACT
1 TAAAAAAACCTAAACT
*
1054449 TAAACAAACCTAAAC-
1 TAAAAAAACCTAAACT
1054464 TAAAAAAAC
1 TAAAAAAAC
1054473 AAAGCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.67, C:0.18, G:0.00, T:0.15
Consensus pattern (16 bp):
TAAAAAAACCTAAACT
Done.