genome.fa.s9353.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009353.1 Hibiscus syriacus cultivar Beakdansim tig00113157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158329

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1609--1656	19	2.5	20	80	19	57	66	12	8	12	1.44
12109--12137	13	2.2	13	100	0	58	51	0	0	48	1.00
12947--13033	39	2.2	39	76	9	88	57	1	5	35	1.30
19928--19986	29	2.0	30	90	3	93	23	11	8	55	1.63
21989--22034	24	2.0	23	87	8	67	45	0	8	45	1.34
21994--22042	22	2.1	23	85	7	64	42	0	10	46	1.37
25506--25562	21	2.7	21	81	13	64	40	5	3	50	1.42
32606--32648	21	2.0	21	86	0	59	30	27	25	16	1.97
32628--32774	65	2.2	66	91	3	235	29	27	25	17	1.98
33077--33148	29	2.5	29	90	0	108	38	9	13	37	1.78
33162--33237	30	2.5	30	89	4	109	39	5	23	31	1.77
33452--33514	13	5.5	13	65	27	52	19	26	26	26	1.99
33448--33528	22	3.6	22	96	1	144	18	27	29	24	1.98
39556--39598	21	2.0	21	86	0	59	30	27	25	16	1.97
39623--39656	17	2.0	17	94	0	59	29	32	29	8	1.87
39577--39724	64	2.3	65	89	4	219	29	27	25	17	1.97
39688--39725	20	1.9	20	88	0	58	23	34	31	10	1.89
40027--40098	29	2.5	29	90	0	108	38	9	13	37	1.78
40112--40188	30	2.5	30	91	2	118	40	5	23	31	1.76
40403--40465	13	5.5	13	65	27	52	19	26	26	26	1.99
40399--40479	22	3.6	22	96	1	144	18	27	29	24	1.98
42090--42148	29	2.0	29	100	0	118	49	13	13	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46778--46836	29	2.0	29	100	0	118	49	13	13	23	1.78
55102--55393	147	2.0	144	97	2	530	29	14	17	38	1.89
59857--59886	2	15.0	2	100	0	60	50	0	0	50	1.00
66611--66641	12	2.6	12	100	0	62	38	0	51	9	1.35
72082--72308	2	121.5	2	63	28	51	40	3	4	50	1.42
72084--72335	5	50.6	5	66	24	81	39	3	5	51	1.43
72082--72303	7	30.7	7	69	18	86	40	4	4	50	1.43
72082--72186	39	2.8	36	75	20	108	38	2	6	52	1.43
72250--72335	11	8.6	10	73	16	72	37	2	4	55	1.33
72084--72349	14	17.2	15	68	20	92	39	4	4	51	1.43
72770--72849	32	2.5	32	82	8	83	65	17	11	6	1.45
74120--74165	22	2.1	22	88	4	67	54	0	10	34	1.36
88746--88791	23	1.9	25	91	8	78	10	26	15	47	1.78
98650--98701	27	2.0	26	85	11	70	40	3	1	53	1.30
103966--104023	20	2.7	20	81	10	62	31	20	22	25	1.98
103986--104023	20	1.9	20	94	0	67	31	21	23	23	1.98
108285--108406	63	1.9	63	96	0	226	36	10	23	28	1.88
108475--108553	35	2.3	35	100	0	158	36	21	18	22	1.95
108487--108551	20	3.5	20	70	20	68	36	18	20	24	1.94
109412--109505	31	3.0	31	87	0	143	24	17	24	34	1.96
115400--115454	20	2.7	19	75	8	56	80	3	12	3	0.98
117014--117048	2	17.5	2	93	0	52	42	0	5	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118578--118627	26	1.9	25	84	8	64	40	4	0	56	1.18
121128--121245	25	4.8	25	94	4	204	28	13	20	37	1.91
121309--121353	16	2.8	17	83	10	58	62	0	2	35	1.08
121322--121371	3	18.0	3	80	19	56	70	0	0	30	0.88
121322--121371	5	9.0	6	83	16	56	70	0	0	30	0.88
121316--121383	35	2.0	33	85	5	91	72	0	0	27	0.85
121323--121375	25	2.1	26	85	3	72	73	0	0	26	0.83
121339--121383	23	2.0	23	87	12	67	77	0	0	22	0.76
121324--121374	13	3.9	14	80	12	56	72	0	0	27	0.85
122873--122901	11	2.6	11	100	0	58	0	20	0	79	0.74
133463--133488	9	2.9	9	100	0	52	88	0	0	11	0.52
136247--136364	25	4.8	25	94	4	204	28	13	20	37	1.91
136438--136485	16	3.1	16	82	11	64	70	0	0	29	0.87
136441--136485	3	16.0	3	82	17	53	71	0	0	28	0.87
136441--136485	5	8.0	6	85	14	53	71	0	0	28	0.87
136442--136498	22	2.4	23	85	11	71	75	0	0	24	0.80
136435--136498	12	5.4	12	77	15	62	73	0	0	26	0.84
137612--137642	2	15.5	2	100	0	62	51	0	48	0	1.00
138631--138669	21	1.9	20	84	5	51	12	10	7	69	1.37
144663--144719	24	2.4	23	77	8	60	35	12	12	40	1.80
147895--147920	3	8.7	3	100	0	52	30	0	0	69	0.89
149645--149693	22	2.2	21	79	10	53	30	4	10	55	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149841--149899	26	2.2	27	93	6	111	40	13	13	32	1.84
151596--151647	16	3.1	16	73	10	50	42	13	0	44	1.44

Tables:   1

The End!