genome.fa.s9354.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009354.1 Hibiscus syriacus cultivar Beakdansim tig00113158_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72739

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4206--4258	20	2.7	20	74	11	63	28	33	15	22	1.94
4247--4334	20	4.3	20	75	2	86	34	23	15	26	1.95
4328--4454	20	6.3	20	87	0	191	43	25	14	16	1.86
4328--4495	60	2.8	60	90	3	250	42	25	14	17	1.87
4328--4474	40	3.7	39	88	3	186	41	27	14	17	1.87
4830--4913	40	2.1	40	88	0	123	20	21	15	42	1.88
4839--4988	20	7.4	20	83	1	147	21	17	14	46	1.83
7271--7356	31	2.8	31	94	0	145	32	25	22	19	1.97
8640--8726	42	2.1	42	97	0	165	45	10	20	22	1.81
13199--13224	3	8.7	3	100	0	52	65	0	0	34	0.93
18155--18199	2	22.5	2	100	0	90	51	0	0	48	1.00
20254--20278	7	3.6	7	100	0	50	60	12	0	28	1.32
40213--40267	27	2.0	27	96	0	101	52	23	7	16	1.68
41439--41491	17	3.1	17	86	0	70	33	13	7	45	1.71
44996--45038	21	2.0	21	82	8	52	18	0	20	60	1.36
45005--45044	21	1.9	21	89	0	62	17	0	22	60	1.37
46362--46494	70	1.9	70	81	4	160	51	10	9	29	1.67
46572--46657	30	2.8	30	81	8	93	51	6	10	31	1.63
58295--58387	21	4.6	20	79	4	105	39	18	23	18	1.92
58292--58387	41	2.3	41	96	0	174	40	17	22	18	1.91
58314--58448	41	3.3	41	81	6	123	38	20	20	20	1.94
58376--58470	20	4.7	20	80	2	91	34	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58658--58701	22	2.0	22	95	0	79	20	45	15	18	1.85
58951--58988	20	1.9	20	88	0	58	13	15	21	50	1.78
60308--60352	18	2.5	18	85	0	63	26	42	15	15	1.87
60835--60890	20	2.8	20	81	2	69	39	21	23	16	1.92
60879--60936	14	3.9	14	79	16	71	48	25	17	8	1.75
60863--60953	32	2.8	33	94	3	166	47	23	18	10	1.80
60843--60958	19	6.6	19	70	21	83	43	23	21	12	1.86
60970--61046	14	4.8	15	82	14	59	9	18	24	48	1.77
60965--61103	19	7.9	18	75	16	123	11	20	23	43	1.84
60965--61082	51	2.3	52	91	2	184	11	21	23	44	1.84
61047--61101	20	2.8	19	89	5	83	16	25	23	34	1.95
60984--61120	39	3.7	38	75	11	133	13	20	24	42	1.87
62968--63003	14	2.6	14	90	0	54	30	0	22	47	1.52
63120--63187	19	3.8	19	83	14	92	47	16	22	14	1.82
63205--63261	20	2.8	20	94	0	96	21	22	17	38	1.93
63627--63660	14	2.4	14	85	0	50	32	0	20	47	1.51
64213--64248	14	2.6	14	90	0	54	30	0	22	47	1.52
64801--64834	14	2.4	14	85	0	50	32	0	20	47	1.51
63225--65212	588	3.4	589	98	0	3880	32	12	19	36	1.89
66069--66127	24	2.5	24	82	0	73	28	16	18	35	1.93
66302--66326	12	2.1	12	100	0	50	72	0	28	0	0.86
68612--68704	32	2.8	33	96	1	170	43	19	24	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68708--68745	18	2.1	18	90	0	58	18	18	18	44	1.87
68852--68888	14	2.6	14	91	0	65	45	24	0	29	1.53
70239--70305	21	3.2	21	68	4	55	19	20	35	23	1.95
70239--70361	42	2.9	41	80	7	113	22	17	36	22	1.95
71068--71108	18	2.2	18	86	8	55	17	12	46	24	1.82
72377--72503	33	3.7	33	86	7	139	41	22	24	11	1.87
72346--72508	19	9.1	19	70	17	125	42	19	23	13	1.87

Tables:   1

The End!