genome.fa.s9357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009357.1 Hibiscus syriacus cultivar Beakdansim tig00113174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85318

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7304--7341	6	6.5	6	85	14	53	52	0	2	44	1.14
13581--13985	205	2.0	205	80	5	462	40	10	10	38	1.74
14563--14645	37	2.2	37	87	4	114	42	18	4	34	1.71
19076--19156	36	2.2	36	81	12	103	43	17	2	37	1.62
19076--19162	37	2.4	38	76	16	94	43	16	3	36	1.64
24340--24430	44	2.1	44	95	0	164	48	8	2	40	1.46
32700--32747	25	2.0	25	83	4	62	45	4	0	50	1.21
42023--42051	3	9.7	3	100	0	58	68	0	0	31	0.89
44074--44120	23	2.0	24	95	4	87	44	8	38	8	1.65
47349--47385	18	2.1	18	100	0	74	59	0	24	16	1.37
48177--48228	20	2.6	20	96	0	95	38	26	13	21	1.90
48284--48477	20	9.6	20	76	8	76	35	25	19	19	1.95
48280--48477	40	5.0	39	81	4	200	35	26	19	19	1.95
48284--48476	60	3.2	60	83	0	251	35	25	19	19	1.95
48858--48928	33	2.2	33	92	0	115	11	22	18	47	1.80
49061--49105	19	2.4	19	88	0	63	48	24	17	8	1.75
49101--49198	19	5.7	19	68	22	72	11	24	21	42	1.85
49123--49212	14	5.7	14	72	23	72	10	25	22	42	1.84
49106--49220	33	3.5	33	92	0	203	10	24	20	45	1.82
50913--51383	185	2.6	185	98	0	908	22	12	18	46	1.82
50913--51383	92	5.1	93	97	1	894	22	12	18	46	1.82
51427--51555	19	7.3	19	75	17	125	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51463--51555	33	2.8	32	91	4	150	46	27	18	7	1.76
51427--51555	52	2.5	52	74	14	140	45	28	17	8	1.77
51551--51685	19	7.6	19	75	16	128	11	19	23	45	1.82
51573--51629	14	3.7	14	77	20	60	10	21	22	45	1.82
51556--51648	33	2.8	33	95	0	168	10	20	21	47	1.80
53582--53618	12	2.8	13	88	12	58	35	0	18	45	1.50
53725--53826	19	5.6	19	84	13	151	44	17	23	14	1.86
53855--54147	19	16.4	19	82	14	383	14	20	18	46	1.83
53833--54147	52	5.9	52	82	11	315	14	20	18	46	1.84
56426--56450	12	2.1	12	100	0	50	0	28	0	72	0.86
56623--56669	24	2.0	24	87	8	69	38	21	14	25	1.92
57342--57709	20	18.5	20	85	6	442	20	19	25	34	1.96
63600--63675	18	3.9	18	79	18	89	31	30	21	17	1.96
63785--63828	23	1.9	23	90	0	70	27	25	29	18	1.98
67209--67264	22	2.7	21	75	8	60	30	14	26	28	1.95
67137--67356	95	2.3	94	89	2	334	32	15	26	25	1.96
67686--68018	58	5.8	58	93	1	537	32	12	19	35	1.89
67693--68018	171	1.9	175	91	2	543	32	12	18	35	1.89
73578--73611	17	1.9	18	94	5	61	38	0	0	61	0.96
74457--74494	15	2.5	16	87	8	53	57	0	5	36	1.21
79267--79324	30	1.9	30	89	0	89	39	6	10	43	1.66
79445--79591	30	4.6	31	74	21	117	50	12	0	36	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79507--79560	20	2.7	21	80	8	69	51	11	0	37	1.37
79524--79777	50	4.8	51	74	11	203	52	13	0	33	1.41
79575--79614	20	2.0	20	100	0	80	50	15	0	35	1.44
79595--79758	32	5.7	32	73	21	157	53	13	0	33	1.40
79679--79735	18	3.4	18	65	22	52	56	14	0	29	1.39
79595--79830	111	2.2	104	87	6	330	52	13	0	34	1.40
79738--79795	21	2.7	21	94	2	98	51	12	0	36	1.39
79704--79852	72	2.0	74	93	3	257	51	12	0	35	1.40
79706--80039	126	2.7	125	84	11	452	51	11	0	36	1.39
79812--79861	22	2.2	21	80	13	55	52	16	0	32	1.44
79986--80101	15	7.5	14	71	19	72	50	2	1	44	1.25
80027--80101	15	5.0	15	86	0	105	48	0	2	49	1.15
79933--80086	66	2.3	65	81	8	179	50	5	1	43	1.33
80994--81042	24	2.0	26	88	8	75	34	12	10	42	1.76
81720--81761	19	2.2	19	86	4	57	42	4	0	52	1.22
81860--81900	21	2.0	21	100	0	82	51	0	9	39	1.35
82902--82987	31	2.8	31	89	3	129	29	13	8	48	1.71
85226--85275	19	2.5	20	93	3	84	24	28	18	30	1.97

Tables:   1

The End!