genome.fa.s9358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009358.1 Hibiscus syriacus cultivar Beakdansim tig00113175_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67524

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1209--1243	14	2.6	14	90	4	54	31	0	22	45	1.53
1348--1449	19	5.6	19	84	13	151	44	17	23	14	1.86
1478--1769	19	16.4	19	81	14	374	14	20	18	46	1.84
1456--1769	52	5.9	52	81	12	306	14	20	18	46	1.84
1478--1741	127	2.1	122	80	16	185	15	21	17	46	1.84
4035--4059	12	2.1	12	100	0	50	0	28	0	72	0.86
4233--4277	23	2.0	23	86	8	65	35	22	15	26	1.94
4956--5321	20	18.5	20	84	7	424	20	19	25	34	1.96
5289--5332	20	2.2	20	83	0	52	20	20	22	36	1.95
11202--11279	18	3.9	18	75	23	75	32	29	20	17	1.96
11202--11307	44	2.4	44	90	0	167	33	27	17	20	1.96
11389--11432	23	1.9	23	90	0	70	27	25	29	18	1.98
14817--14872	22	2.7	21	75	8	60	30	14	26	28	1.95
14745--14965	95	2.3	95	89	1	336	32	15	27	24	1.96
14911--14965	22	2.7	21	83	10	69	27	14	32	25	1.95
15296--15629	57	5.8	58	93	1	546	32	12	19	35	1.89
15296--15629	115	2.9	115	92	2	535	32	12	19	35	1.89
21208--21241	17	1.9	18	94	5	61	38	0	0	61	0.96
22086--22127	17	2.5	17	92	0	66	61	0	4	33	1.17
26922--26981	31	1.9	31	93	0	102	40	6	10	43	1.64
26995--27562	54	10.6	54	74	13	347	52	12	0	35	1.39
27027--27191	32	5.7	32	75	21	166	52	12	0	35	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27061--27135	22	3.2	23	71	17	73	54	16	0	29	1.42
26995--27638	80	7.9	83	82	13	778	52	12	0	34	1.40
26995--27687	134	5.2	127	76	13	533	52	12	0	35	1.39
27130--27182	14	3.5	14	72	18	52	56	5	0	37	1.23
27169--27234	21	3.1	22	87	12	102	51	10	0	37	1.37
27246--27288	22	2.0	22	100	0	86	51	13	0	34	1.42
27248--27296	22	2.2	22	88	3	71	55	14	0	30	1.40
27352--27409	18	3.4	18	70	18	61	56	13	0	29	1.38
26995--27638	241	2.7	242	96	0	1182	52	12	0	34	1.40
27412--27476	22	3.0	22	97	0	121	52	12	0	35	1.39
27488--27530	22	2.0	22	95	0	77	48	16	0	34	1.46
27490--27539	22	2.2	21	80	13	55	52	16	0	32	1.44
27544--27618	22	3.2	22	75	14	69	54	16	0	29	1.42
27090--27687	54	11.1	54	76	12	441	52	12	0	35	1.39
27667--27784	15	7.5	15	77	13	121	50	2	1	44	1.25
27613--27769	69	2.3	67	84	7	194	50	5	1	42	1.32
27373--27754	54	7.4	49	76	15	187	51	10	0	37	1.39
27667--27832	15	9.8	17	69	21	77	50	3	1	45	1.25
29436--29476	19	2.1	19	86	4	55	41	4	0	53	1.22
29580--29620	21	2.0	21	100	0	82	51	0	9	39	1.35
30638--30723	31	2.8	31	89	3	129	29	13	8	48	1.71
33017--33067	20	2.5	20	96	0	93	23	27	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41413--41469	30	1.9	30	85	0	78	33	10	21	35	1.87
45842--45874	8	4.1	8	96	0	57	0	33	3	63	1.10
47452--47510	21	2.9	21	84	2	84	32	22	8	37	1.84
49700--49817	31	3.8	32	77	3	114	27	28	22	20	1.99
52756--52805	11	4.4	11	77	7	55	32	0	0	68	0.90
59159--59205	19	2.5	19	96	3	87	31	12	29	25	1.93
59738--59770	15	2.2	15	94	0	57	15	21	33	30	1.94

Tables:   1

The End!