genome.fa.s9359.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009359.1 Hibiscus syriacus cultivar Beakdansim tig00113177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193785

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3096--3131	15	2.4	15	90	0	54	44	0	5	50	1.25
7572--7621	19	2.5	20	87	3	66	46	6	12	36	1.66
12301--12343	23	1.9	22	90	4	68	16	9	4	69	1.31
14219--14261	23	1.9	23	85	4	61	16	9	4	69	1.31
16803--16850	5	9.8	5	78	13	55	2	18	0	79	0.84
16796--16867	18	4.2	18	81	12	80	1	19	1	77	0.91
16795--16868	29	2.6	28	77	14	78	1	20	1	77	0.92
17575--17625	19	2.6	20	87	3	68	43	3	15	37	1.66
21229--21275	24	2.0	24	83	8	60	38	19	23	19	1.93
22451--22512	5	12.8	5	77	19	69	1	17	1	79	0.90
22450--22486	14	2.6	14	95	4	65	0	16	0	83	0.64
22451--22529	9	8.4	10	73	17	53	1	17	2	78	0.93
22448--22528	11	8.1	10	70	28	50	1	18	2	77	0.94
22439--22531	18	5.2	18	74	22	56	1	18	4	76	1.01
23238--23288	19	2.6	20	90	3	77	43	5	15	35	1.71
29842--29882	21	2.0	21	85	9	57	0	19	2	78	0.87
30317--30374	13	4.7	13	68	12	50	29	1	41	27	1.66
30260--30375	35	3.3	35	91	1	187	32	1	37	27	1.67
34032--34072	16	2.6	16	84	0	55	70	0	14	14	1.16
34281--34322	6	6.7	6	86	8	57	0	21	0	78	0.75
34283--34323	21	2.0	21	90	9	66	0	21	0	78	0.76
34701--34830	13	10.9	12	69	20	69	33	1	37	26	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34701--34775	35	2.1	35	97	0	141	33	1	37	28	1.66
34722--34780	19	3.3	19	62	13	52	35	1	37	25	1.66
34723--34824	48	2.1	49	90	1	161	33	1	38	26	1.68
34746--34846	49	2.1	48	85	5	132	34	3	33	27	1.76
36053--37610	779	2.0	779	93	1	2674	29	20	18	31	1.96
38129--38232	33	3.1	33	82	9	95	30	36	1	30	1.69
42601--42704	33	3.1	33	82	9	95	30	36	1	30	1.69
43525--43603	35	2.2	35	81	2	86	30	36	2	30	1.71
44045--44088	14	2.9	15	83	13	54	77	4	13	4	1.08
47906--47975	36	2.0	35	82	2	86	30	37	2	30	1.72
51689--51743	23	2.3	25	81	6	69	61	12	16	9	1.55
54493--54522	13	2.4	13	94	5	53	43	0	30	26	1.55
58008--58083	23	3.3	23	92	5	118	56	11	19	11	1.66
64615--64683	33	2.1	33	83	5	86	28	36	2	31	1.72
70854--70890	2	18.5	2	94	0	65	48	0	2	48	1.15
72872--72911	20	1.9	20	85	10	53	32	7	32	27	1.85
73544--73901	177	2.0	179	95	4	654	18	21	18	41	1.90
77410--77449	20	2.0	20	90	9	64	55	7	0	37	1.29
77415--77446	16	1.9	17	93	6	57	56	6	0	37	1.25
79539--79578	20	2.1	19	85	4	53	40	10	17	32	1.83
84469--84537	33	2.1	33	83	5	86	31	1	36	30	1.67
88935--89003	33	2.1	33	83	5	86	31	1	36	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90713--90763	19	2.6	20	87	3	68	45	5	15	33	1.71
96642--96692	20	2.6	20	87	3	68	37	15	5	41	1.72
99211--99284	13	5.7	12	80	16	85	75	2	18	2	1.04
99212--99279	27	2.6	27	97	2	129	76	2	17	2	1.04
99212--99278	32	2.3	32	85	14	92	76	2	17	2	1.05
99212--99278	5	13.8	5	71	22	54	76	2	17	2	1.05
102446--102496	20	2.6	20	90	3	77	35	15	5	43	1.71
112390--112454	19	3.8	18	76	17	50	0	10	13	75	1.05
112415--112451	14	2.6	14	95	4	65	0	10	8	81	0.89
120101--120142	19	2.2	19	87	8	59	50	4	9	35	1.56
126058--126092	17	2.1	16	89	5	52	0	11	5	82	0.82
126417--126517	33	3.0	33	80	11	82	32	1	33	31	1.69
130860--130960	33	3.0	33	80	11	82	32	1	33	31	1.69
134151--134203	23	2.2	24	84	12	74	60	11	16	11	1.59
134154--134204	25	2.1	25	89	7	79	60	11	15	11	1.58
138919--138974	23	2.3	25	81	9	80	64	12	14	8	1.50
138961--138991	10	3.0	10	90	9	53	80	0	19	0	0.71
140406--140510	36	2.9	36	90	1	158	30	37	4	27	1.77
146081--146135	24	2.3	24	75	9	60	67	10	14	7	1.41
148882--148911	13	2.4	13	94	5	53	43	0	30	26	1.55
153760--153795	15	2.4	15	90	0	54	44	0	5	50	1.25
163484--163537	28	1.9	28	100	0	108	42	12	18	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166256--166314	26	2.3	25	88	5	91	13	6	6	72	1.25
167864--167945	28	2.9	28	100	0	164	42	13	18	25	1.86
169707--169758	21	2.6	21	90	6	81	34	13	5	46	1.67
170468--170526	21	2.8	22	79	7	77	74	3	20	1	1.05
173842--173910	33	2.1	33	83	5	86	31	1	36	30	1.67
185200--185280	35	2.3	35	80	14	96	29	2	37	30	1.71
187590--187690	33	3.0	33	80	11	82	32	1	33	31	1.69
191640--191674	17	2.1	16	89	5	52	0	11	5	82	0.82

Tables:   1

The End!