genome.fa.s9364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009364.1 Hibiscus syriacus cultivar Beakdansim tig00113188_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150245

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6489--6585	42	2.3	41	82	1	113	24	22	22	29	1.99
6803--6904	42	2.4	42	93	0	168	26	22	20	30	1.98
6803--6946	42	3.5	42	84	5	150	27	22	20	29	1.98
10648--10704	23	2.4	23	82	8	62	49	14	7	29	1.69
11135--11170	16	2.2	16	90	0	54	19	13	22	44	1.86
11778--11878	27	3.7	26	74	13	80	29	27	0	42	1.56
11840--11941	37	2.7	38	86	6	136	29	26	0	44	1.55
12197--12240	13	3.3	13	82	17	54	47	0	9	43	1.35
12370--12422	16	3.3	16	79	10	63	45	15	15	24	1.84
13840--13909	12	5.8	12	75	6	61	51	18	12	17	1.76
13840--13909	24	2.9	24	80	0	86	51	18	12	17	1.76
15051--15134	43	2.0	43	92	0	141	22	21	3	52	1.62
15485--15607	63	2.0	63	100	0	246	27	28	9	34	1.89
16518--16555	16	2.2	17	86	9	51	21	28	34	15	1.94
18644--18713	12	5.8	12	73	6	52	52	18	11	17	1.73
18644--18713	24	2.9	24	80	0	86	52	18	11	17	1.73
18643--18750	24	4.5	24	72	6	85	48	17	13	20	1.81
20289--20411	63	2.0	63	96	0	228	28	28	8	34	1.86
21346--21384	18	2.2	18	95	0	69	12	23	46	17	1.83
21338--21405	31	2.2	31	89	0	100	16	22	44	17	1.87
21338--21369	13	2.5	13	94	0	55	15	25	43	15	1.86
26199--26264	33	2.1	31	86	8	89	34	25	16	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27934--28000	23	2.9	23	90	0	98	29	25	22	22	1.99
28016--28231	103	2.1	103	95	0	387	36	24	13	25	1.92
41564--41820	131	1.9	133	85	3	358	37	17	18	26	1.93
41909--41939	2	15.5	2	100	0	62	48	0	0	51	1.00
47614--47948	166	2.0	166	88	2	503	24	14	27	33	1.95
53951--53984	2	16.5	2	93	6	59	47	0	2	50	1.16
64952--64984	7	4.9	7	96	3	59	15	24	15	45	1.84
68558--68871	37	8.6	37	74	13	240	44	4	7	43	1.51
68558--68795	75	3.2	74	79	8	211	43	3	8	44	1.52
68611--68938	75	4.5	75	76	10	270	45	3	6	44	1.45
68601--68903	37	8.4	36	71	19	170	45	3	7	43	1.49
71355--71408	5	10.8	5	94	6	92	16	1	0	81	0.78
72033--72077	19	2.4	19	92	3	74	11	13	8	66	1.44
75066--77019	165	11.9	164	92	1	2847	30	24	20	24	1.99
75066--77019	658	3.0	658	93	1	3166	30	24	20	24	1.99
77610--77922	37	8.6	37	73	12	229	45	3	7	43	1.50
77663--77988	74	4.4	74	72	12	221	46	2	6	44	1.44
77634--77988	38	9.7	38	73	14	157	45	3	7	44	1.47
77937--77979	16	2.6	16	81	3	50	48	0	4	46	1.22
78027--78068	10	4.3	10	84	6	50	26	9	0	64	1.24
80202--80232	16	1.9	16	93	0	53	64	6	0	29	1.18
82357--82423	23	3.0	24	75	18	74	17	10	14	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84847--84923	38	2.0	38	94	0	136	29	11	11	46	1.76
95247--95314	34	2.0	33	91	2	109	29	22	17	30	1.97
101995--102028	3	11.3	3	87	0	50	26	0	5	67	1.13
104553--104956	132	3.1	128	78	8	436	30	18	18	33	1.94
112728--112759	2	16.5	2	93	6	57	50	0	0	50	1.00
115831--115869	16	2.4	16	80	12	53	66	0	0	33	0.92
135840--135879	19	2.0	21	85	9	57	50	7	0	42	1.30
137078--137127	25	2.0	25	100	0	100	28	8	24	40	1.83
139944--139995	24	2.1	26	89	7	81	15	13	17	53	1.72
140249--140290	10	3.9	10	82	17	57	9	9	19	61	1.53
140254--140293	13	3.3	13	73	20	50	12	7	17	62	1.52
140308--140355	21	2.3	21	92	0	78	39	14	10	35	1.80
144048--144128	31	2.8	28	80	10	90	39	7	9	43	1.66
144048--144132	28	2.9	28	81	10	98	38	7	11	42	1.69
144229--144330	31	3.4	29	79	11	91	37	14	9	38	1.80

Tables:   1

The End!