Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009366.1 Hibiscus syriacus cultivar Beakdansim tig00113196_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121597

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3165--3834
105
6.4
105
96
0
1223
33
25
18
23
1.97
5380--5432
16
3.2
16
81
10
54
37
1
3
56
1.28
5762--5835
9
7.7
9
69
19
51
18
2
2
75
1.04
5762--5803
18
2.4
17
84
11
57
14
0
4
80
0.86
9289--9327
18
2.2
18
100
0
78
17
51
20
10
1.74
11763--11878
24
4.8
24
85
6
146
24
15
18
41
1.89
15385--15752
187
2.0
185
94
2
639
43
8
4
43
1.55
31168--31211
23
1.9
23
81
9
54
65
15
6
11
1.44
31459--31495
14
2.6
14
95
0
65
59
10
10
18
1.59
36670--36710
21
2.0
21
95
0
73
9
9
12
68
1.40
37503--37537
12
2.9
12
100
0
70
34
0
5
60
1.21
37686--37746
21
3.0
21
73
2
52
40
19
9
29
1.84
43901--43927
2
13.5
2
100
0
54
51
0
0
48
1.00
44117--44165
21
2.4
19
81
18
55
48
0
2
48
1.12
44146--44178
13
2.6
13
85
4
50
45
0
0
54
0.99
47293--47336
21
2.2
20
84
12
54
20
4
6
68
1.31
47446--47477
15
2.1
15
100
0
64
6
12
0
81
0.87
52221--52273
16
3.2
16
73
19
54
83
1
11
3
0.87
54849--54889
20
2.0
21
90
4
66
58
0
0
41
0.98
58868--58928
31
2.0
31
83
0
77
52
1
16
29
1.53
76501--76572
3
23.0
3
78
13
74
37
1
0
61
1.05
76502--76584
27
2.9
28
80
10
96
39
1
0
59
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78920--78975
24
2.1
27
84
12
73
35
5
0
58
1.21
81288--81328
7
5.9
7
83
11
57
14
17
9
58
1.62
89004--89059
23
2.5
23
88
2
87
35
8
14
41
1.77
89610--89980
185
2.0
185
97
0
706
32
15
14
38
1.87
89921--90759
76
11.0
76
96
0
1554
23
22
21
32
1.98
90917--90988
3
23.0
3
78
13
74
37
1
0
61
1.05
90918--91000
27
2.9
28
80
10
96
39
1
0
59
1.05
100936--100976
3
13.7
3
100
0
82
31
0
0
68
0.90
118942--119588
153
4.2
155
87
7
917
29
18
5
46
1.72
118942--119631
311
2.2
307
87
8
974
29
18
5
45
1.72

Tables:   1

The End!