Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009367.1 Hibiscus syriacus cultivar Beakdansim tig00113198_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58309

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6766--6804
13
2.8
14
84
11
53
41
2
10
46
1.51
6773--6804
13
2.4
14
94
5
57
34
3
6
56
1.40
9456--9956
37
13.8
36
86
6
644
46
5
3
44
1.44
10484--11575
165
6.6
162
76
9
554
25
19
22
31
1.98
10524--11575
84
12.7
84
78
5
899
25
19
23
31
1.98
10517--11575
249
4.3
249
85
2
1299
25
19
23
31
1.98
10550--11575
497
2.1
498
85
3
1381
25
19
23
31
1.98
12769--12990
95
2.5
87
75
17
233
31
20
21
27
1.98
12824--13007
95
2.0
93
87
6
264
28
19
20
31
1.97
16433--16457
11
2.3
11
100
0
50
8
0
16
76
1.02
18115--18148
17
2.1
16
88
5
50
14
8
0
76
1.01
24503--24551
20
2.5
20
80
3
55
16
18
0
65
1.28
28368--28401
17
2.1
16
88
5
50
14
8
0
76
1.01
28921--28948
3
9.3
3
100
0
56
67
0
0
32
0.91
28975--29096
37
3.3
36
82
6
147
47
4
2
45
1.37
29179--29566
20
19.2
20
78
13
370
40
23
19
15
1.90
29179--29559
40
9.4
40
85
8
456
40
24
19
15
1.90
29662--29736
6
12.5
6
100
0
150
33
50
16
0
1.45
30237--30281
6
7.5
6
100
0
90
0
15
51
33
1.44
30385--30563
20
8.8
20
82
13
222
17
20
25
36
1.94
30377--30568
60
3.1
60
83
8
253
16
19
23
39
1.92
30385--30644
40
6.4
40
83
9
264
16
19
23
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30377--30644
20
13.2
20
77
10
181
16
19
22
41
1.89
30727--30878
36
4.2
37
85
6
220
44
7
2
46
1.45
30727--30879
73
2.1
73
89
4
229
43
7
3
45
1.47
31063--31159
21
4.6
21
80
0
122
18
19
26
35
1.95
31063--31191
42
3.1
42
85
4
145
20
18
24
35
1.95
32012--32202
42
4.5
42
95
1
337
34
25
20
19
1.96
32009--32295
63
4.6
61
81
11
325
33
25
20
20
1.97
32184--32311
40
3.1
42
84
6
192
33
24
21
21
1.97
32009--32295
21
13.8
21
76
14
283
33
25
20
20
1.97
32307--32359
21
2.5
21
90
0
79
16
18
32
32
1.94
35987--36067
42
2.0
42
87
4
121
25
1
18
54
1.51
35987--36068
40
2.1
39
84
9
103
25
1
18
54
1.50
45226--45272
24
2.0
24
91
0
76
46
6
23
23
1.75
50577--50631
25
2.2
26
83
9
69
43
5
3
47
1.44
50778--50863
7
12.9
7
75
11
74
47
33
0
18
1.49
52692--52765
18
4.4
18
66
27
63
55
0
4
40
1.19

Tables:   1

The End!