genome.fa.s9368.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009368.1 Hibiscus syriacus cultivar Beakdansim tig00113201_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85879

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2809--2923	41	2.8	42	79	16	125	50	0	0	48	1.06
2817--2899	43	2.0	40	86	6	112	50	1	0	48	1.08
2871--2942	21	3.5	21	74	12	60	52	1	0	45	1.09
2901--2944	20	2.1	21	87	4	63	50	2	0	47	1.13
4852--4878	7	3.9	7	100	0	54	44	14	29	11	1.80
7802--7844	21	2.0	21	81	0	50	30	30	25	13	1.94
7802--7973	67	2.6	67	86	4	222	27	27	27	17	1.98
8612--8678	22	3.0	22	100	0	134	19	26	26	26	1.99
14710--14752	21	2.0	21	81	0	50	30	30	25	13	1.94
14710--14882	67	2.6	67	87	4	224	27	27	27	17	1.98
15521--15587	22	3.0	22	100	0	134	19	26	26	26	1.99
17707--17756	25	2.0	25	100	0	100	48	8	24	20	1.76
19741--21000	417	3.0	422	82	5	1429	24	10	24	39	1.87
19736--21009	214	6.0	214	81	5	1380	24	11	24	39	1.87
22043--22073	2	15.5	2	100	0	62	48	0	0	51	1.00
22176--22202	14	1.9	14	100	0	54	44	3	29	22	1.70
24793--24827	2	17.5	2	100	0	70	51	0	0	48	1.00
26612--26896	144	2.0	142	89	5	443	27	20	17	34	1.95
27792--27823	2	16.0	2	93	0	55	46	0	0	53	1.00
30201--30321	58	2.1	59	96	1	226	39	19	8	32	1.82
31675--31700	13	2.0	13	100	0	52	30	0	7	61	1.24
32664--32705	10	4.2	10	82	17	52	73	2	0	23	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35469--35596	60	2.1	60	98	0	247	24	19	20	35	1.95
37422--37474	27	2.0	27	96	0	97	39	22	5	32	1.78
37991--38015	3	8.3	3	100	0	50	68	0	32	0	0.90
38533--38560	12	2.3	12	100	0	56	53	10	14	21	1.70
53241--53856	105	5.9	105	96	0	1119	33	24	18	23	1.97
53599--54114	263	1.9	265	82	7	637	34	24	18	22	1.96
53704--54015	164	1.9	166	84	6	416	33	25	18	21	1.96
53866--54314	99	4.5	99	94	0	738	35	24	19	20	1.96
56039--56094	30	1.9	28	86	13	78	26	12	5	55	1.58
56039--56094	28	1.9	30	86	13	82	26	12	5	55	1.58
56169--56211	18	2.4	17	84	11	50	32	4	2	60	1.30
59005--59064	27	2.2	27	96	0	111	11	31	18	38	1.87
61935--61975	21	2.0	21	95	0	73	29	14	24	31	1.95
63227--63272	18	2.5	19	83	13	60	19	0	17	63	1.32
75880--75990	33	3.2	33	85	14	168	36	33	15	15	1.89
75880--75977	39	2.7	37	90	9	150	36	33	13	16	1.87
76022--76116	29	3.3	29	95	0	163	13	30	32	23	1.93
76143--76258	50	2.4	50	90	7	170	20	37	18	22	1.94
76473--76511	16	2.3	18	86	8	55	38	0	5	56	1.22
76611--76702	46	2.0	48	85	12	129	41	0	10	47	1.38
76743--76818	30	2.6	29	85	10	100	40	0	10	48	1.38
76872--76911	15	2.7	16	81	14	50	37	0	7	55	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79035--79067	17	1.9	17	93	0	57	45	12	6	36	1.66
79062--79105	21	2.1	21	86	0	61	45	4	9	40	1.56
79072--79105	11	3.2	11	83	8	52	47	5	8	38	1.59
79034--79116	14	6.2	14	76	17	63	44	9	7	38	1.65
79218--79625	11	33.9	11	65	24	102	45	9	2	42	1.49
79218--79562	14	26.1	13	70	22	156	45	9	2	42	1.49
79274--79562	26	11.7	26	76	14	247	43	10	2	43	1.51
79274--79619	123	2.8	124	97	1	646	44	10	2	43	1.50
82429--82477	25	2.0	23	88	7	71	38	2	6	53	1.38
82698--82767	18	3.8	18	74	9	70	51	10	0	38	1.36
83204--83229	8	3.2	8	100	0	52	46	11	0	42	1.40
83249--83297	21	2.3	21	82	3	62	51	18	0	30	1.47
83723--83790	35	1.9	35	93	0	118	25	16	30	27	1.96
83827--83851	12	2.1	12	100	0	50	24	60	0	16	1.36
84113--84167	13	4.1	13	78	17	67	29	49	21	0	1.50
84116--84171	28	1.9	30	92	7	98	28	50	21	0	1.49
84145--84223	40	2.0	39	95	2	140	36	37	15	10	1.81
84221--84309	29	3.0	30	95	3	155	17	26	37	17	1.93

Tables:   1

The End!