genome.fa.s9369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009369.1 Hibiscus syriacus cultivar Beakdansim tig00113235_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88322

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3573--3640	2	34.0	2	96	0	127	48	1	0	50	1.10
7340--7412	2	36.5	2	100	0	146	49	0	0	50	1.00
11185--11217	2	16.5	2	100	0	66	51	0	0	48	1.00
11515--11566	26	2.0	26	84	0	68	28	26	26	17	1.97
19982--20122	66	2.1	66	85	5	187	29	23	16	31	1.96
19998--20137	66	2.1	66	80	7	151	30	23	17	28	1.97
27691--27790	20	5.0	20	81	11	107	29	28	15	28	1.96
27754--27820	20	3.4	19	83	4	62	22	29	14	32	1.94
27773--27902	20	6.5	20	72	11	88	27	25	12	34	1.92
27694--27900	40	5.2	40	74	8	129	28	26	13	32	1.94
28656--28709	24	2.2	24	86	0	72	22	14	20	42	1.88
31475--31572	21	4.7	21	91	3	153	23	19	36	20	1.95
31846--31898	21	2.5	21	84	0	70	30	30	20	18	1.97
31978--32017	21	1.9	21	89	0	62	37	37	10	15	1.80
32884--32930	23	2.0	25	87	8	71	17	8	4	70	1.29
33005--33047	18	2.4	18	80	0	50	25	0	2	72	0.97
32976--33064	37	2.3	40	81	9	105	30	2	3	64	1.22
33186--33257	9	7.7	9	70	14	56	19	2	5	72	1.17
33207--33254	20	2.3	21	89	7	71	20	0	6	72	1.05
36401--36452	21	2.5	21	78	6	52	73	0	17	9	1.09
36513--36650	69	2.0	69	92	0	231	39	22	13	25	1.90
38003--38042	20	2.0	20	95	0	71	32	30	10	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38025--38084	20	3.0	20	83	14	70	26	26	15	31	1.95
38067--38195	20	6.4	20	71	8	84	30	24	10	34	1.89
38087--38201	40	2.9	38	81	3	122	30	23	10	35	1.88
38971--39004	12	2.8	12	90	0	50	55	29	0	14	1.40
39124--39183	24	2.5	24	76	10	68	26	16	16	40	1.90
41771--41823	20	2.7	20	81	0	70	18	15	22	43	1.87
43633--43754	63	1.9	63	81	0	145	32	34	13	19	1.90
43724--43773	21	2.4	21	79	0	55	38	34	10	18	1.84
43649--43770	63	1.9	63	81	6	149	31	35	13	19	1.90
45432--45495	20	3.2	20	88	0	74	50	15	14	20	1.78
45507--45549	20	2.2	20	95	0	77	16	13	16	53	1.73
45513--45556	20	2.2	20	87	0	61	18	13	18	50	1.79
46011--46048	20	2.0	20	84	5	51	44	13	15	26	1.83
46058--46103	20	2.3	20	96	0	83	17	13	23	45	1.83
46189--46226	20	2.0	20	84	5	51	44	13	15	26	1.83
45943--46302	178	2.0	178	97	0	675	26	11	20	41	1.87
46236--46281	20	2.3	20	96	0	83	17	13	23	45	1.83
46369--46422	20	2.7	21	85	8	85	24	14	31	29	1.95
46505--46533	2	14.5	2	100	0	58	48	0	0	51	1.00
48533--48952	200	2.1	193	83	6	549	35	15	20	27	1.93
50603--50633	2	15.5	2	100	0	62	48	0	0	51	1.00
50776--50801	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51400--51568	61	2.8	60	78	5	182	39	5	20	34	1.75
51699--51757	30	2.0	30	96	0	109	22	10	15	52	1.72
53677--53724	20	2.4	20	92	0	87	31	12	8	47	1.71
53791--53851	24	2.5	24	89	0	86	18	22	24	34	1.96
55799--55876	31	2.5	31	95	0	138	19	12	16	51	1.76
56125--56163	16	2.4	16	95	0	69	48	10	12	28	1.74
57477--57539	31	2.0	31	90	0	99	49	9	14	26	1.74
64603--64645	22	2.0	22	81	9	52	39	6	11	41	1.68
69698--69744	10	4.4	11	76	12	53	42	2	2	53	1.25
72469--72511	23	1.9	23	90	4	70	48	0	2	48	1.14
72467--72520	22	2.5	20	80	16	63	46	0	1	51	1.11
73325--73353	15	1.9	15	100	0	58	68	0	3	27	1.05
73282--73352	24	2.9	24	73	10	63	63	5	1	29	1.26
73357--73451	42	2.3	43	76	12	99	58	3	3	34	1.29
75026--75071	24	2.0	23	87	12	67	65	0	34	0	0.93
75486--75553	15	5.2	13	75	20	61	26	0	1	72	0.94
75510--75551	6	6.5	6	84	15	57	21	0	0	78	0.75
75516--75559	21	2.1	21	91	8	72	27	0	0	72	0.85
82226--82262	2	18.0	2	94	5	65	48	0	2	48	1.15
84528--84651	49	2.5	50	77	6	146	14	36	28	20	1.92
86319--86424	49	2.1	50	87	1	151	21	32	33	13	1.92

Tables:   1

The End!