genome.fa.s937.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000937.1 Hibiscus syriacus cultivar Beakdansim tig00001872_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  312687

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3100--3133	16	2.0	18	88	11	54	55	0	17	26	1.42
11555--11582	8	3.5	8	100	0	56	10	14	0	75	1.06
11548--11592	16	2.9	15	83	9	63	6	20	0	73	1.05
14981--15119	72	1.9	71	82	7	174	39	20	17	21	1.92
19854--19897	22	2.0	23	86	4	63	11	15	13	59	1.62
33238--33357	58	2.1	58	85	4	161	25	15	20	38	1.92
39988--40042	24	2.3	24	75	9	60	67	10	14	7	1.41
46945--46974	15	2.0	15	93	0	51	36	6	30	26	1.82
49046--49085	13	3.0	13	96	3	71	37	10	22	30	1.87
50295--50342	24	2.0	24	95	0	87	31	31	4	33	1.77
51887--52270	196	2.0	196	94	0	678	28	18	18	33	1.95
53718--53756	9	4.3	9	90	0	60	61	0	10	28	1.28
58578--58628	19	2.6	20	84	3	68	47	5	9	37	1.61
64578--64602	8	3.1	8	100	0	50	0	24	0	76	0.80
64884--64929	18	2.3	19	82	17	58	67	0	8	23	1.18
64890--64928	18	2.0	20	90	9	64	66	0	10	23	1.22
68769--68800	15	2.1	16	94	5	57	3	18	0	78	0.89
68795--68848	23	2.2	25	87	6	76	9	16	12	61	1.56
86757--87175	59	7.1	59	85	1	561	26	23	11	38	1.89
104665--105142	59	8.1	59	91	0	740	27	23	12	36	1.91
107411--107451	22	1.9	21	85	5	55	19	2	34	43	1.64
130889--130913	13	1.9	13	100	0	50	72	4	24	0	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147370--147421	22	2.2	24	86	6	72	11	15	13	59	1.61
150677--150709	16	2.1	17	88	11	52	27	15	0	57	1.38
185767--185796	15	1.9	16	93	6	53	20	26	0	53	1.46
198300--198333	17	1.9	18	88	5	52	64	0	20	14	1.28
198957--199040	35	2.4	36	82	4	100	30	2	36	29	1.70
217773--217858	13	7.2	12	72	22	58	29	3	37	30	1.74
217755--217859	36	2.9	36	95	1	185	28	4	36	30	1.78
221015--221082	18	3.8	18	78	11	61	70	0	13	16	1.17
221035--221087	16	3.1	17	76	12	56	71	0	13	15	1.14
221619--221704	13	7.2	12	72	22	58	29	3	37	30	1.74
221601--221705	36	2.9	36	95	1	185	28	4	36	30	1.78
238106--238145	19	2.0	20	85	4	55	20	12	0	67	1.22
238115--238156	19	2.2	19	83	8	50	23	11	0	64	1.27
250186--250255	2	35.0	2	100	0	140	50	0	0	50	1.00
251965--252014	19	2.6	19	90	0	73	46	6	12	36	1.66
252683--252732	24	2.0	25	81	11	59	20	24	24	32	1.98
253183--253268	13	7.2	12	72	22	58	29	3	37	30	1.74
253165--253269	36	2.9	36	95	1	185	28	4	36	30	1.78
253611--253661	19	2.6	20	87	3	68	45	5	15	33	1.71
266011--266068	9	6.0	9	82	13	71	0	3	12	84	0.74
266004--266067	20	3.2	20	88	2	92	0	3	12	84	0.74
268309--268346	18	2.1	18	95	0	67	34	36	7	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270670--270700	2	15.5	2	93	0	53	48	0	3	48	1.17
275147--275315	33	5.1	33	91	1	241	11	28	13	46	1.78
278137--278184	22	2.2	22	88	7	71	56	4	16	22	1.58
283037--283106	29	2.4	28	81	13	79	50	5	0	44	1.26
283036--283103	30	2.3	31	80	12	79	50	5	0	44	1.26
285374--285459	31	2.8	32	81	12	99	29	3	4	62	1.31
288795--288893	51	1.9	51	83	4	128	16	29	30	24	1.96
288963--289012	22	2.3	22	92	0	91	30	46	0	24	1.53
298418--298529	19	5.8	20	78	14	99	18	24	27	29	1.98
298418--298489	29	2.4	30	88	6	103	16	26	26	30	1.97
298418--298529	10	11.7	9	71	12	71	18	24	27	29	1.98
298533--298598	22	2.9	22	90	4	96	18	45	22	13	1.84
298554--298591	17	2.2	17	100	0	76	18	47	23	10	1.79
305691--305775	10	8.8	9	81	12	80	17	27	25	29	1.98
305691--305768	20	4.0	20	79	12	90	17	26	24	30	1.97
305692--305781	29	3.1	29	78	12	96	16	28	25	28	1.97
305712--305781	19	3.7	19	73	19	74	15	30	27	27	1.96
305692--305775	39	2.2	39	91	8	136	16	27	26	29	1.97
305778--305835	5	10.8	5	75	14	53	18	50	22	8	1.74
305778--305842	22	3.0	22	95	0	121	18	47	23	10	1.79
308719--308807	31	2.7	33	87	10	137	35	10	17	35	1.84
308831--308918	36	2.4	35	78	14	97	32	3	17	46	1.64

Tables:   1

The End!