Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009370.1 Hibiscus syriacus cultivar Beakdansim tig00113236_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 211821
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 2
Found at i:197031 original size:52 final size:54
Alignment explanation
Indices: 196905--197039 Score: 131
Period size: 52 Copynumber: 2.5 Consensus size: 54
196895 TAGTTTACTT
*
196905 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAATGAAAA
1 TCGCAAC-CGAAA-TGAAAATCGCAACGCGAAACCAAAATCGCAAC-CGAAATG-AAA
* **
196963 TCGCAA-CGACA-G--AATCGCAACGCGAAATGAAAATCGCAA-CGAAA-G-AA
1 TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
*
197010 TCGCAACGCGAAATGAAAATCGCAATGCGA
1 TCGCAAC-CGAAATGAAAATCGCAACGCGA
197040 TTTTGGTTTC
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
47 8 0.12
49 5 0.08
50 6 0.09
52 37 0.56
56 4 0.06
58 6 0.09
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.10
Consensus pattern (54 bp):
TCGCAACCGAAATGAAAATCGCAACGCGAAACCAAAATCGCAACCGAAATGAAA
Found at i:197057 original size:19 final size:19
Alignment explanation
Indices: 197035--197163 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
197025 AAAATCGCAA
197035 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
197054 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
197068 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
197087 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
197101 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
197120 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
197139 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
197159 TGCGA
1 TGCGA
197164 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:197077 original size:33 final size:33
Alignment explanation
Indices: 197035--197126 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
197025 AAAATCGCAA
197035 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
197068 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
197101 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
197127 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:197366 original size:93 final size:93
Alignment explanation
Indices: 197207--197585 Score: 735
Period size: 93 Copynumber: 4.1 Consensus size: 93
197197 TTGAATGGAT
197207 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
197272 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
197300 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
197365 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
197393 AAATTTACTTTCAACCAAAAGAC-AAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
197456 AGTTTAGCAGAATTGGCAGCAACCGAAC
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
197484 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
*
197549 AGTTTAGCAGAATTGGCAGCAACCGAAT
66 AGTTTAGCAGAATTGGCAGCAACCGAAC
197577 AAATTTACT
1 AAATTTACT
197586 AAGCAATCTA
Statistics
Matches: 283, Mismatches: 1, Indels: 4
0.98 0.00 0.01
Matches are distributed among these distances:
91 76 0.27
92 30 0.11
93 177 0.63
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:197518 original size:184 final size:186
Alignment explanation
Indices: 197207--197585 Score: 735
Period size: 184 Copynumber: 2.0 Consensus size: 186
197197 TTGAATGGAT
197207 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
197272 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
197337 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
197393 AAATTTACTTTCAACCAAAAGAC-AAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
197456 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
197521 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAT
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
197577 AAATTTACT
1 AAATTTACT
197586 AAGCAATCTA
Statistics
Matches: 192, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
184 154 0.80
185 15 0.08
186 23 0.12
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:199308 original size:14 final size:14
Alignment explanation
Indices: 199289--199378 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
199279 TTGAAATGAA
199289 AATCGCAACGAGAG
1 AATCGCAACGAGAG
199303 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
199320 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
199336 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
199355 AATCGCAACGAGAG
1 AATCGCAACGAGAG
199369 AATCGCAACG
1 AATCGCAACG
199379 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:199326 original size:33 final size:33
Alignment explanation
Indices: 199281--199395 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
199271 TCTTTTGGTT
199281 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
199314 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
199347 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
199380 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
199396 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:199327 original size:19 final size:18
Alignment explanation
Indices: 199288--199400 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
199278 GTTGAAATGA
199288 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
199303 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
199320 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
199336 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
199353 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
199369 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
199386 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
199401 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:199431 original size:14 final size:14
Alignment explanation
Indices: 199412--199466 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
199402 TTTGGTTTCG
199412 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
199426 CGTTGCGATTTCCATTTCG
1 CGTTGCGA-TT-C---TCT
199445 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
199459 CGTTGCGA
1 CGTTGCGA
199467 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
15 2 0.06
16 1 0.03
17 1 0.03
18 2 0.06
19 10 0.29
ACGTcount: A:0.09, C:0.27, G:0.24, T:0.40
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:199629 original size:33 final size:33
Alignment explanation
Indices: 199587--199657 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
199577 AATACTAACT
*
199587 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
199620 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
199653 TGAAA
1 TGAAA
199658 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:199890 original size:21 final size:22
Alignment explanation
Indices: 199839--199892 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
199829 TGGTTGTGAG
**
199839 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
199861 GGAAATCTTCGGAGAT-GGGAC
1 GGATTTCTTCGGAGATGGGGAC
199882 GGATTTCTTCG
1 GGATTTCTTCG
199893 CCGTAGAGAG
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 14 0.54
22 12 0.46
ACGTcount: A:0.20, C:0.17, G:0.39, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:200063 original size:20 final size:20
Alignment explanation
Indices: 200038--200231 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
200028 CTTTAAATAT
200038 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
200058 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
200080 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
200099 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
200119 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
200139 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
200159 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
200179 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
200199 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
200219 CGCGTTGCGATTT
1 CGCGTTGCGATTT
200232 TGGAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:200225 original size:60 final size:60
Alignment explanation
Indices: 200038--200231 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
200028 CTTTAAATAT
**
200038 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
200099 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
200159 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
200219 CGCGTTGCGATTT
1 CGCGTTGCGATTT
200232 TGGAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:200248 original size:21 final size:20
Alignment explanation
Indices: 200224--200300 Score: 57
Period size: 21 Copynumber: 3.7 Consensus size: 20
200214 ATATTCGCGT
200224 TGCGATTTTGGAAAATCGCAA
1 TGCGATTTTGGAAAATCGC-A
* * **
200245 TGCGAATTTGTACTATCGCA
1 TGCGATTTTGGAAAATCGCA
* *
200265 TCGCGATTTT-CAAGAATCGCGT
1 T-GCGATTTTGGAA-AATCGC-A
200287 TGCGATTTTGGAAA
1 TGCGATTTTGGAAA
200301 CTGATTTGCG
Statistics
Matches: 42, Mismatches: 10, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.07
21 36 0.86
22 3 0.07
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.32
Consensus pattern (20 bp):
TGCGATTTTGGAAAATCGCA
Found at i:200311 original size:20 final size:20
Alignment explanation
Indices: 200286--200337 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
200276 AAGAATCGCG
*
200286 TTGCGATTTTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
200306 TTGCGATTCTGGAAACTGAT
1 TTGCGATTCTGGAAACTGAT
200326 TTGCGATTCTGG
1 TTGCGATTCTGG
200338 GGATCGCGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.21, C:0.13, G:0.27, T:0.38
Consensus pattern (20 bp):
TTGCGATTCTGGAAACTGAT
Found at i:200652 original size:16 final size:14
Alignment explanation
Indices: 200616--200654 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 14
200606 GTAGTTATTC
*
200616 ATATTATTAAAAAA
1 ATATTATAAAAAAA
200630 ATATTATAAAAAATA
1 ATATTATAAAAAA-A
200645 AGTATTATAA
1 A-TATTATAA
200655 GTAGATTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 12 0.55
15 2 0.09
16 8 0.36
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (14 bp):
ATATTATAAAAAAA
Found at i:202780 original size:24 final size:24
Alignment explanation
Indices: 202753--202821 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
202743 CTAAATTATT
202753 AATTTTGATCCATTTTAATATCTA
1 AATTTTGATCCATTTTAATATCTA
*
202777 AATTTT-A-CC----TATTATC--
1 AATTTTGATCCATTTTAATATCTA
202793 AATTTTGATCCATTTTAATATCTA
1 AATTTTGATCCATTTTAATATCTA
202817 AATTT
1 AATTT
202822 AAAAAAAACA
Statistics
Matches: 35, Mismatches: 2, Indels: 16
0.66 0.04 0.30
Matches are distributed among these distances:
16 6 0.17
17 1 0.03
18 8 0.23
22 8 0.23
23 1 0.03
24 11 0.31
ACGTcount: A:0.33, C:0.13, G:0.03, T:0.51
Consensus pattern (24 bp):
AATTTTGATCCATTTTAATATCTA
Found at i:206574 original size:22 final size:22
Alignment explanation
Indices: 206549--206595 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
206539 TCGCCACCAC
206549 CGCCACTACACTTCGTTAGTTT
1 CGCCACTACACTTCGTTAGTTT
206571 CGCCACTACACTTCGTTAGTTT
1 CGCCACTACACTTCGTTAGTTT
206593 CGC
1 CGC
206596 TTTCATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.17, C:0.34, G:0.15, T:0.34
Consensus pattern (22 bp):
CGCCACTACACTTCGTTAGTTT
Found at i:206860 original size:2 final size:2
Alignment explanation
Indices: 206853--206949 Score: 74
Period size: 2 Copynumber: 54.5 Consensus size: 2
206843 CCGCCCCGAT
*
206853 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TT TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
206893 TA TT TA TA T- TA -A T- TA TA TA TA -A TA T- TT TA TA T- TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
206929 TA T- TA -A T- TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
206950 TTTTGGGTTC
Statistics
Matches: 77, Mismatches: 6, Indels: 24
0.72 0.06 0.22
Matches are distributed among these distances:
1 12 0.16
2 65 0.84
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:206922 original size:30 final size:32
Alignment explanation
Indices: 206875--206952 Score: 119
Period size: 30 Copynumber: 2.5 Consensus size: 32
206865 TATATATATA
206875 TATATATATAATA-TTTAT-TATTTATATTAA-
1 TATATATATAATATTTTATAT-TTTATATTAAT
206905 T-TATATATAATATTTTATATTTTATATTAAT
1 TATATATATAATATTTTATATTTTATATTAAT
206936 TATATATATAATATTTT
1 TATATATATAATATTTT
206953 TGGGTTCGAG
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
29 11 0.25
30 16 0.36
31 2 0.05
32 15 0.34
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (32 bp):
TATATATATAATATTTTATATTTTATATTAAT
Done.