genome.fa.s9371.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009371.1 Hibiscus syriacus cultivar Beakdansim tig00113242_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109671

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85--161	39	2.2	32	73	26	84	33	12	2	50	1.55
2142--2166	7	3.6	7	100	0	50	40	0	0	60	0.97
3525--3561	19	2.0	20	84	10	51	27	21	8	43	1.80
3841--3887	22	2.1	22	100	0	94	17	34	14	34	1.90
4141--4207	2	36.5	2	78	16	74	44	0	0	55	0.99
4171--4222	7	6.9	7	75	16	50	36	0	0	63	0.95
4140--4240	30	3.1	32	88	9	134	41	0	0	58	0.98
4143--4238	16	5.8	16	74	18	74	42	0	0	57	0.98
4139--4235	39	2.3	42	81	13	119	43	0	0	56	0.99
15600--15645	24	1.9	24	82	8	58	52	19	13	15	1.75
25604--25636	6	5.5	6	100	0	66	84	0	0	15	0.61
25604--25642	18	2.2	18	90	0	60	82	2	2	12	0.89
29230--29287	29	2.0	29	90	6	91	13	32	25	27	1.94
29330--29362	14	2.4	14	94	0	57	24	39	30	6	1.79
29425--29480	23	2.4	23	87	0	85	10	37	23	28	1.88
29425--29487	23	2.7	23	85	0	72	9	38	25	26	1.87
29470--29502	14	2.4	14	94	0	57	6	30	39	24	1.79
54366--54395	15	2.0	15	100	0	60	26	13	20	40	1.89
54732--54774	2	21.5	2	100	0	86	51	0	0	48	1.00
58649--58674	12	2.2	12	100	0	52	53	7	0	38	1.30
61051--61077	2	13.5	2	100	0	54	51	0	0	48	1.00
63631--63681	20	2.5	20	87	3	66	50	5	5	37	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70798--70919	63	1.9	63	81	0	145	30	22	21	25	1.99
72536--72938	212	1.9	212	87	2	585	26	15	20	37	1.93
79528--80012	229	2.1	227	95	1	873	44	8	7	39	1.62
80290--80336	20	2.4	19	89	10	76	55	10	17	17	1.69
80079--80550	181	2.6	182	89	2	682	42	14	16	25	1.87
80471--80517	20	2.4	19	79	10	58	55	10	14	19	1.68
82732--82784	21	2.5	21	84	0	79	39	15	32	13	1.85
84640--84687	19	2.6	19	93	3	80	31	2	10	56	1.45
84801--85747	199	4.9	199	88	7	1434	36	15	16	31	1.90
85234--85747	195	2.8	176	88	9	685	35	15	16	32	1.90
87197--87258	18	3.4	18	79	0	79	37	9	35	17	1.83
87197--87288	6	15.3	6	79	0	67	36	7	34	20	1.81
87212--87292	3	27.0	3	75	0	72	35	6	34	23	1.80
87200--87276	36	2.1	36	90	0	118	35	9	35	20	1.85
87200--87288	12	7.4	12	84	0	88	35	7	34	21	1.82
87197--87288	18	5.1	18	77	0	76	36	7	34	20	1.81
88785--89278	184	2.7	182	93	1	853	34	14	17	33	1.91
91739--91803	25	2.6	25	80	0	85	35	9	13	41	1.77
92138--92200	23	2.8	23	87	2	92	34	4	22	38	1.75
96081--96143	27	2.3	27	94	0	108	30	17	31	20	1.96
99061--99755	113	6.0	114	87	8	1017	39	21	11	27	1.88
99061--99751	350	2.0	341	88	7	1034	39	21	11	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100473--100497	12	2.1	12	100	0	50	24	0	48	28	1.52
100835--100942	52	2.0	52	85	3	144	32	18	10	38	1.84
103740--103782	21	2.0	22	90	4	70	25	34	23	16	1.95
104515--104572	28	2.1	28	96	0	107	39	27	15	17	1.90
107754--107832	34	2.4	34	82	6	99	46	25	5	22	1.72
108671--108742	23	3.0	23	82	10	74	56	2	2	37	1.28

Tables:   1

The End!