Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009372.1 Hibiscus syriacus cultivar Beakdansim tig00113243_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80083

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2375--2414
18
2.4
16
87
8
53
35
7
17
40
1.78
2375--2417
16
2.5
18
88
7
63
34
6
16
41
1.75
2984--3038
2
28.0
2
96
3
103
50
0
0
49
1.00
4036--4097
23
2.7
23
79
0
79
17
25
22
33
1.96
5316--5353
20
1.9
20
84
10
51
31
13
2
52
1.54
6578--6637
30
2.0
31
87
6
88
36
6
15
41
1.73
6856--6897
21
2.0
21
95
0
75
23
21
28
26
1.99
6927--6966
20
1.9
21
85
10
55
37
37
10
15
1.80
15423--15451
13
2.2
13
100
0
58
31
13
13
41
1.84
19172--19205
3
11.3
3
93
0
59
64
0
2
32
1.08
32892--32952
27
2.3
27
85
0
77
40
1
1
55
1.19
34395--34777
48
7.9
48
74
9
240
32
23
16
26
1.96
34410--34770
99
3.7
96
79
6
350
32
23
16
27
1.96
34395--34757
147
2.5
148
79
6
373
33
24
16
25
1.96
38327--38473
21
7.1
21
71
7
122
18
20
24
36
1.94
38357--38470
20
5.6
20
73
8
113
15
22
23
37
1.93
38332--38473
41
3.5
41
95
1
241
18
21
23
36
1.95
38332--38498
41
4.1
40
92
2
194
17
21
23
37
1.94
38591--38650
6
10.5
6
96
1
81
30
53
13
3
1.56
38651--38691
5
8.4
5
86
2
57
39
21
36
2
1.67
39173--39205
6
5.7
6
96
3
59
0
18
51
30
1.46
39317--39389
20
3.6
20
75
3
83
39
24
20
15
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39314--39418
21
5.1
21
70
4
97
38
25
18
18
1.93
39314--39414
41
2.5
41
98
0
193
37
24
18
18
1.94
39454--39556
41
2.5
41
85
0
134
37
26
17
18
1.93
39314--39585
142
1.9
142
92
1
456
34
23
21
20
1.97
40330--40378
19
2.6
19
83
0
53
42
6
16
34
1.73
40369--40412
22
2.0
22
86
8
63
43
9
20
27
1.82
40446--40509
21
3.0
21
86
2
83
26
29
15
28
1.96
44163--44216
27
2.0
27
92
0
90
42
20
14
22
1.88
46622--46716
28
3.6
27
69
16
81
74
2
5
17
1.10
46683--46707
13
1.9
13
100
0
50
80
4
0
16
0.87
47235--47325
11
8.5
10
69
20
51
72
1
5
20
1.11
47236--47279
23
1.9
23
90
0
70
70
2
4
22
1.17
47236--47279
11
3.9
11
82
11
54
70
2
4
22
1.17
47293--47344
25
2.0
28
88
11
83
69
1
0
28
0.99
47359--47403
12
3.7
12
81
3
54
66
0
4
28
1.11
47957--48060
37
2.8
37
82
2
120
33
13
13
39
1.84
48778--50479
106
16.0
106
89
3
2393
23
17
24
34
1.96
51304--51373
22
3.2
22
87
0
113
22
14
28
34
1.93
51983--52041
6
9.0
6
77
17
55
1
15
5
77
1.01
51983--52041
26
2.2
27
88
8
86
1
15
5
77
1.01
51983--52041
16
3.8
16
77
18
61
1
15
5
77
1.01
51983--52050
22
2.9
23
82
12
68
1
14
7
76
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52011--52056
22
2.2
21
84
7
58
0
17
6
76
1.00
51974--52057
22
3.7
22
75
19
57
1
16
7
75
1.09
56475--56553
22
3.6
21
75
16
65
75
5
2
16
1.08
56569--56617
23
2.1
23
85
7
64
65
0
2
32
1.04
57080--57109
12
2.6
11
94
5
51
63
6
6
23
1.43
57188--57242
12
4.5
12
79
2
56
69
0
3
27
1.05
57189--57239
24
2.1
24
92
0
84
68
0
3
27
1.07
57800--57903
37
2.8
37
88
0
145
31
14
12
41
1.83
61456--61518
20
3.1
20
84
4
90
15
25
30
28
1.96
70496--70599
45
2.3
46
88
5
149
31
16
21
30
1.95
70583--70633
19
2.7
19
85
8
70
25
15
35
23
1.94
71011--71090
31
2.6
31
91
0
124
31
35
2
31
1.71
75504--75550
20
2.2
21
78
17
53
44
6
12
36
1.68
77703--77739
19
1.9
19
100
0
74
21
16
40
21
1.91

Tables:   1

The End!