genome.fa.s9373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009373.1 Hibiscus syriacus cultivar Beakdansim tig00113244_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59370

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2665--2805	41	3.5	41	94	2	232	18	21	24	36	1.95
2690--2802	20	5.6	20	72	2	109	15	23	23	37	1.93
2913--2972	6	10.5	6	96	1	81	30	53	13	3	1.56
2973--3013	5	8.4	5	86	2	57	39	21	36	2	1.67
3626--3698	20	3.6	20	75	3	83	39	24	20	15	1.91
3623--3724	41	2.5	42	96	1	188	37	24	18	19	1.94
3762--3864	41	2.5	41	85	0	134	37	26	17	18	1.93
3626--3903	141	2.0	141	88	3	407	34	22	21	21	1.96
4667--4710	22	2.0	22	86	8	63	43	9	20	27	1.82
4738--4804	21	3.1	21	82	8	82	29	29	13	26	1.94
8395--8447	26	2.0	27	88	3	81	41	20	15	22	1.89
10845--10914	13	5.4	13	73	13	63	78	2	2	15	0.99
10903--10978	29	2.8	27	79	14	84	65	2	3	27	1.23
11270--11325	22	2.6	21	77	13	60	64	0	7	28	1.20
11425--11478	11	4.8	11	80	13	56	72	3	3	20	1.16
11435--11478	23	1.9	23	90	0	70	70	2	4	22	1.17
11494--11588	9	10.1	9	68	20	52	66	1	5	27	1.20
12144--12247	37	2.8	37	82	2	120	33	13	13	39	1.84
12982--14663	106	15.9	106	89	3	2357	23	17	24	34	1.96
15485--15554	22	3.2	22	87	0	113	22	14	28	34	1.93
16159--16217	6	9.0	6	77	17	55	1	15	5	77	1.01
16159--16217	26	2.2	27	88	8	86	1	15	5	77	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16159--16217	16	3.8	16	77	18	61	1	15	5	77	1.01
16159--16226	22	2.9	23	82	12	68	1	14	7	76	1.07
16187--16232	22	2.2	21	84	7	58	0	17	6	76	1.00
16150--16233	22	3.7	22	75	19	57	1	16	7	75	1.09
20666--20773	22	4.5	24	70	15	73	69	3	3	23	1.21
21237--21277	11	3.6	11	87	6	55	65	4	4	24	1.32
21297--21405	13	8.7	13	69	22	56	66	0	5	26	1.19
21296--21340	21	2.1	21	88	8	65	68	2	0	28	1.01
21362--21406	22	2.0	22	91	0	72	68	0	4	26	1.08
21375--21404	16	1.9	15	93	6	51	66	0	3	30	1.07
21307--21407	53	1.9	52	80	13	118	67	0	5	25	1.20
21968--22071	37	2.8	37	88	0	145	31	14	12	41	1.83
25617--25679	20	3.1	20	84	4	90	15	25	30	28	1.96
34683--34786	45	2.3	44	87	11	140	31	15	21	31	1.94
34770--34820	19	2.7	19	85	8	70	25	15	35	23	1.94
35199--35260	31	2.0	31	96	0	115	35	33	3	27	1.73
39699--39745	20	2.2	21	78	17	53	44	6	12	36	1.68
41817--41920	45	2.3	44	87	11	140	31	15	21	31	1.94
41904--41954	19	2.7	19	85	8	70	25	15	35	23	1.94
42176--42211	12	3.0	12	100	0	72	41	8	8	41	1.65
45135--45179	20	2.3	20	88	3	65	48	11	4	35	1.59
45138--45177	20	2.0	20	95	0	71	45	12	5	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45244--45282	20	2.0	20	94	0	69	41	17	5	35	1.72
45136--45283	53	2.8	52	93	3	262	47	14	5	32	1.66
47829--47882	20	2.7	19	88	8	81	53	18	18	9	1.70
47917--48170	20	12.4	20	88	5	301	35	16	25	22	1.95
47895--48134	83	2.9	83	89	1	333	34	17	24	23	1.96
48280--48317	6	6.5	6	96	3	69	31	52	15	0	1.43
49013--49050	6	6.5	6	96	3	69	0	15	52	31	1.43
49138--49435	20	14.6	20	79	5	193	19	22	19	38	1.94
49138--49351	40	5.2	40	84	5	230	21	24	17	36	1.95
49140--49352	83	2.6	83	87	2	288	21	24	17	36	1.94
51661--51705	20	2.3	20	88	3	65	48	11	4	35	1.59
51664--51703	20	2.0	20	95	0	71	45	12	5	37	1.64
51717--51756	20	2.0	21	90	5	64	45	15	5	35	1.68
51770--51808	20	2.0	20	94	0	69	41	17	5	35	1.72
51662--51809	53	2.8	52	95	3	271	47	13	5	33	1.65

Tables:   1

The End!