genome.fa.s9374.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009374.1 Hibiscus syriacus cultivar Beakdansim tig00113245_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62553

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12863--12906	22	2.0	22	90	0	70	11	9	18	61	1.55
16983--17137	37	4.2	35	78	14	129	41	2	7	48	1.46
16983--17137	73	2.1	71	80	12	172	41	2	7	48	1.46
17098--17169	31	2.3	31	83	7	83	43	6	8	41	1.62
17169--17256	25	3.3	26	76	12	81	45	3	5	45	1.44
17207--17392	39	5.1	36	76	12	157	45	4	6	44	1.49
17083--17330	127	2.0	121	93	4	424	44	5	6	43	1.52
17212--17343	35	3.7	35	78	12	117	46	4	6	42	1.48
17207--17387	35	4.9	38	77	12	105	46	3	6	43	1.46
17291--17387	38	2.6	39	82	7	105	48	3	4	44	1.37
18666--18697	11	2.9	11	95	0	55	28	0	3	68	1.04
18746--18780	3	11.7	3	93	0	61	31	0	2	65	1.07
27390--27715	37	9.4	35	69	19	152	45	3	5	45	1.44
27417--27556	63	2.2	63	86	7	187	44	2	5	47	1.39
27481--27715	36	6.7	35	73	21	163	44	2	5	47	1.41
29091--29130	2	20.0	2	100	0	80	50	0	0	50	1.00
32765--32835	2	35.5	2	97	0	133	47	0	0	52	1.00
34595--34646	14	3.7	14	89	0	77	11	15	17	55	1.68
34857--34933	24	3.2	24	71	0	73	12	11	19	55	1.67
35899--35950	20	2.6	20	96	0	95	38	26	13	21	1.90
35940--36038	21	4.8	20	72	6	72	36	23	19	21	1.95
36005--36198	20	9.6	20	81	5	221	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36005--36198	60	3.2	60	83	0	253	35	25	19	19	1.95
36581--36651	33	2.2	33	92	0	115	11	22	18	47	1.80
36772--36826	14	3.6	14	73	21	56	40	23	27	9	1.85
36772--36842	33	2.2	33	92	0	115	42	25	23	8	1.82
36838--36935	19	5.7	19	70	22	81	10	24	22	42	1.84
36860--36949	14	5.7	14	74	23	81	8	25	23	42	1.83
36843--36957	33	3.5	33	95	0	212	9	24	20	45	1.81
38650--39119	92	5.1	93	98	1	912	21	12	19	46	1.83
39162--39290	19	7.3	19	73	17	98	45	26	17	10	1.80
39198--39290	33	2.8	32	88	4	141	46	24	19	9	1.80
39286--39420	19	7.6	19	75	16	128	11	19	23	45	1.82
39308--39364	14	3.7	14	77	20	60	10	21	22	45	1.82
39291--39383	33	2.8	33	95	0	168	10	20	21	47	1.80
41226--41298	38	1.9	38	97	0	137	28	1	16	53	1.51
41221--41285	19	3.4	19	64	8	51	24	1	15	58	1.46
41280--41315	14	2.6	14	95	0	63	33	0	22	44	1.53
41428--41528	19	5.6	19	82	15	142	43	17	23	14	1.87
41557--41863	19	17.4	19	78	17	351	14	20	17	47	1.83
41525--41863	142	2.4	137	89	6	513	15	20	17	46	1.83
41557--41835	52	5.2	52	90	6	345	15	20	16	47	1.83
44167--44191	12	2.1	12	100	0	50	0	28	0	72	0.86
44366--44412	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45086--45454	20	18.5	20	86	4	458	20	18	26	34	1.96
50824--50932	34	3.2	34	94	1	182	50	4	12	32	1.61
52963--53002	18	2.1	20	86	9	57	50	2	2	45	1.28

Tables:   1

The End!