Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01009375.1 Hibiscus syriacus cultivar Beakdansim tig00113246_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74653
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:106 original size:33 final size:33
Alignment explanation
Indices: 67--137 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
57 TTCACTTAGA
*
67 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
100 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
133 TTTCA
1 TTTCA
138 AGTTAGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.11, C:0.23, G:0.18, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:276 original size:14 final size:14
Alignment explanation
Indices: 257--311 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
247 AGAATGACTG
257 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
*
271 TCGCAACGCGAAATGGAAA
1 TCGCAA--CGAGA--G-AA
290 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
304 TCGCAACG
1 TCGCAACG
312 CGAAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 16 0.47
15 1 0.03
16 4 0.12
17 4 0.12
18 1 0.03
19 8 0.24
ACGTcount: A:0.40, C:0.24, G:0.27, T:0.09
Consensus pattern (14 bp):
TCGCAACGAGAGAA
Found at i:324 original size:33 final size:33
Alignment explanation
Indices: 257--327 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
247 AGAATGACTG
***
257 TCGCAACGAGAGAATCGCAACGCGAAATGGAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
290 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
1 TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
323 TCGCA
1 TCGCA
328 TTGCGATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.42, C:0.25, G:0.24, T:0.08
Consensus pattern (33 bp):
TCGCAACGAGAGAATCGCAACGCGAAACCAAAA
Found at i:345 original size:19 final size:19
Alignment explanation
Indices: 323--420 Score: 81
Period size: 19 Copynumber: 5.7 Consensus size: 19
313 GAAACCAAAA
*
323 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
342 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
356 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
375 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
389 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
408 TCGCGTTGCGATT
1 TCGCGTTGCGATT
421 CTCTCGTGCG
Statistics
Matches: 63, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
14 20 0.32
16 5 0.08
17 6 0.10
19 32 0.51
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.43
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:364 original size:14 final size:14
Alignment explanation
Indices: 345--433 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
335 TTTCATTTCG
345 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
359 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
378 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
392 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
409 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
425 CG-TGCGATT
1 CGTTGCGATT
434 TTCATTTCAA
Statistics
Matches: 63, Mismatches: 2, Indels: 21
0.73 0.02 0.24
Matches are distributed among these distances:
13 7 0.11
14 20 0.32
15 1 0.02
16 8 0.13
17 8 0.13
18 1 0.02
19 18 0.29
ACGTcount: A:0.09, C:0.26, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:370 original size:33 final size:33
Alignment explanation
Indices: 328--441 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
318 CAAAATCGCA
328 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
361 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
394 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
427 -TGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
442 AACCAAAAGA
Statistics
Matches: 77, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
32 13 0.17
33 64 0.83
ACGTcount: A:0.10, C:0.25, G:0.21, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:2541 original size:183 final size:179
Alignment explanation
Indices: 2129--2588 Score: 797
Period size: 183 Copynumber: 2.6 Consensus size: 179
2119 TAGATTGCTT
2129 AGTAAA-TTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTA-T-TTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
*
2191 TTTGTC-TTGTTTTGTTTTTGG-TGAAAGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTG
66 TTTGTCTTTGTTTTGTCTTTGGTTGAAAGTAAA-TT-TTCGGTTGCTGCCAATTCTGCTAAACTG
2254 TGTATTCTTAACACTGTGAAATATATTGGTCTTTGTTTTGTTTTGGTTGAA
129 TGTATTCTTAACACTGTGAAATATATTGGTCTTTGTTTTGTTTTGGTTGAA
2305 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2370 TTTGTCTTTGTTTTGTCTTTGGTTGAAAGTAAATTTTCGGTTGCTGCCAATTCTGCTAAACTGTG
66 TTTGTCTTTGTTTTGTCTTTGGTTGAAAGTAAATTTTCGGTTGCTGCCAATTCTGCTAAACTGTG
*
2435 TATTCTTTAACACTGTGAAATAGTATTTGTCTTTGTTTTGTCTTTTGGTTGAA
131 TATTC-TTAACACTGTGAAATA-TATTGGTCTTTGTTTTG--TTTTGGTTGAA
2488 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2553 TTTGTCTTTGTTTTGTCTTTTGGTTG-AAGTAAATTT
66 TTTGTCTTTGTTTTGTC-TTTGGTTGAAAGTAAATTT
2589 ATCCATTCAA
Statistics
Matches: 272, Mismatches: 2, Indels: 13
0.95 0.01 0.05
Matches are distributed among these distances:
176 6 0.02
177 35 0.13
178 1 0.00
179 61 0.22
180 32 0.12
181 26 0.10
183 103 0.38
184 8 0.03
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (179 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTGGTTGAAAGTAAATTTTCGGTTGCTGCCAATTCTGCTAAACTGTG
TATTCTTAACACTGTGAAATATATTGGTCTTTGTTTTGTTTTGGTTGAA
Found at i:2607 original size:93 final size:93
Alignment explanation
Indices: 2129--2588 Score: 813
Period size: 90 Copynumber: 5.1 Consensus size: 93
2119 TAGATTGCTT
2129 AGTAAA-TTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTA-T-TTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2191 TTTGTC-TTGTTTTGT-TTTTGG-TGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2216 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTC-TTAACACTGTGAAATA-TA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
*
2279 TTGGTCTTTGTTTTG--TTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2305 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2370 TTTGTCTTTGTTTTGTC-TTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2397 AGTAAA-TT-TTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2460 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2488 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2553 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2580 AGTAAATTT
1 AGTAAATTT
2589 ATCCATTCAA
Statistics
Matches: 359, Mismatches: 2, Indels: 19
0.94 0.01 0.05
Matches are distributed among these distances:
87 6 0.02
88 48 0.13
89 74 0.21
90 88 0.25
91 34 0.09
92 28 0.08
93 81 0.23
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:2657 original size:20 final size:19
Alignment explanation
Indices: 2632--2758 Score: 82
Period size: 18 Copynumber: 7.3 Consensus size: 19
2622 TAGTTTACTT
*
2632 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-TAAAA
*
2652 TCGCAACGCGAAAC-CAAA
1 TCGCAACGCGAAACTAAAA
*
2670 TCGCAACGCGAAA-TGAAA
1 TCGCAACGCGAAACTAAAA
*
2688 TCGCAA--CG--AC-AGAA
1 TCGCAACGCGAAACTAAAA
*
2702 TCGCAATGCGAAA-TGAAAA
1 TCGCAACGCGAAACT-AAAA
*
2721 TCGCAA--CG--AC-AAGA
1 TCGCAACGCGAAACTAAAA
*
2735 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACTAAAA
2754 TCGCA
1 TCGCA
2759 TTGCGATTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 29
0.70 0.07 0.24
Matches are distributed among these distances:
14 18 0.21
15 1 0.01
16 6 0.07
17 2 0.02
18 28 0.33
19 17 0.20
20 13 0.15
ACGTcount: A:0.45, C:0.27, G:0.18, T:0.10
Consensus pattern (19 bp):
TCGCAACGCGAAACTAAAA
Found at i:2727 original size:33 final size:32
Alignment explanation
Indices: 2666--2758 Score: 134
Period size: 33 Copynumber: 2.9 Consensus size: 32
2656 AACGCGAAAC
2666 CAAATCGCAACGCGAAATG-AAATCGCAACGA
1 CAAATCGCAACGCGAAATGAAAATCGCAACGA
*
2697 CAGAATCGCAATGCGAAATGAAAATCGCAACGA
1 CA-AATCGCAACGCGAAATGAAAATCGCAACGA
**
2730 CAAGATCGCAACGCGAAACCAAAATCGCA
1 CAA-ATCGCAACGCGAAATGAAAATCGCA
2759 TTGCGATTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
31 2 0.04
32 17 0.31
33 36 0.65
ACGTcount: A:0.45, C:0.26, G:0.19, T:0.10
Consensus pattern (32 bp):
CAAATCGCAACGCGAAATGAAAATCGCAACGA
Found at i:2801 original size:12 final size:14
Alignment explanation
Indices: 2775--2831 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
2765 TTTTCATTCG
2775 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
2789 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
2806 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
2822 CGTTGCGATT
1 CGTTGCGATT
2832 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:2814 original size:33 final size:33
Alignment explanation
Indices: 2759--2850 Score: 159
Period size: 33 Copynumber: 2.8 Consensus size: 33
2749 CAAAATCGCA
*
2759 TTGCGATTTTCA-TTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
2791 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
2824 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
2851 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
32 12 0.21
33 44 0.79
ACGTcount: A:0.11, C:0.21, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:2815 original size:19 final size:19
Alignment explanation
Indices: 2754--2871 Score: 114
Period size: 19 Copynumber: 6.8 Consensus size: 19
2744 GAAACCAAAA
*
2754 TCGCATTGCGATTTTCA-T
1 TCGCGTTGCGATTTTCATT
2772 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
2788 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
2805 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
2821 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
2838 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
2857 TCGCGTTGCGATTTT
1 TCGCGTTGCGATTTT
2872 AAGTTTCGTT
Statistics
Matches: 82, Mismatches: 7, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
14 15 0.18
16 13 0.16
17 8 0.10
18 10 0.12
19 36 0.44
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:4728 original size:38 final size:38
Alignment explanation
Indices: 4685--4757 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
4675 TAATTGATTG
*
4685 TTTTTGATTGTTTAATTGATTTGTAAAAGTTGATTCAA
1 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATTCAA
4723 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATT
1 TTTTTGATTGTTTAATTGATTTGTAAAAGATGATT
4758 TGTAAAAGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.29, C:0.01, G:0.16, T:0.53
Consensus pattern (38 bp):
TTTTTGATTGTTTAATTGATTTGTAAAAGATGATTCAA
Found at i:4744 original size:19 final size:19
Alignment explanation
Indices: 4681--4744 Score: 51
Period size: 19 Copynumber: 3.4 Consensus size: 19
4671 AGTTTAATTG
4681 ATTG-TTTTTGATTGTTTA
1 ATTGATTTTTGATTGTTTA
* * ** *
4699 ATTGATTTGTAAAAG-TTG
1 ATTGATTTTTGATTGTTTA
*
4717 ATTCAATTTTTGATTGTTTA
1 ATT-GATTTTTGATTGTTTA
4737 ATTGATTT
1 ATTGATTT
4745 GTAAAAGATG
Statistics
Matches: 31, Mismatches: 12, Indels: 5
0.65 0.25 0.10
Matches are distributed among these distances:
18 9 0.29
19 17 0.55
20 5 0.16
ACGTcount: A:0.25, C:0.02, G:0.16, T:0.58
Consensus pattern (19 bp):
ATTGATTTTTGATTGTTTA
Found at i:4758 original size:14 final size:14
Alignment explanation
Indices: 4739--4774 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
4729 ATTGTTTAAT
4739 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
4753 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
4767 TGATTTGT
1 TGATTTGT
4775 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:4903 original size:19 final size:19
Alignment explanation
Indices: 4887--4988 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
4877 AAAAATGACT
4887 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
4906 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
4925 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
4939 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
4958 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
4978 ATCGCAATGCG
1 ATCGCAATGCG
4989 TTTATAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
14 10 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 40 0.53
20 19 0.25
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:5041 original size:19 final size:19
Alignment explanation
Indices: 5017--5322 Score: 342
Period size: 19 Copynumber: 17.4 Consensus size: 19
5007 GATTATCTCG
5017 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
5036 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
5055 TTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCA
5069 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
5088 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
5107 TTGCGATTTTCATTTCGTA
1 TTGCGATTTTCATTTCGCA
*
5126 TTGCGATTTTAATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
5145 TTGCGA--TT-ATGTCTG--
1 TTGCGATTTTCATTTC-GCA
5160 TT-CGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
5178 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
5197 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
5211 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
5230 TTGCGA-TTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
5248 TTGCGATTCTCA---CG--
1 TTGCGATTTTCATTTCGCA
5262 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
5282 TTGCGATTTTCA--T-G--
1 TTGCGATTTTCATTTCGCA
* *
5296 TTGGGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
5315 TTGCGATT
1 TTGCGATT
5323 GTATTTTCCG
Statistics
Matches: 247, Mismatches: 11, Indels: 58
0.78 0.03 0.18
Matches are distributed among these distances:
14 37 0.15
15 2 0.01
16 26 0.11
17 23 0.09
18 23 0.09
19 124 0.50
20 12 0.05
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:5282 original size:52 final size:52
Alignment explanation
Indices: 5017--5294 Score: 327
Period size: 52 Copynumber: 5.2 Consensus size: 52
5007 GATTATCTCG
*
5017 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGA--TTC-TTTCG--
1 TTGCGATTTTCATTTCGCATTGCGATTCTCA---CG--TTGCGATTTTCATTTCGCA
* *
5069 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGTA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCA---CG--TTGCGATTTTCATTTCGCA
* * **
5126 TTGCGATTTTAATTTCGCATTGCGATTATGTCTGTT-CGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCAC-GTTGCGATTTTCATTTCGCA
*
5178 TTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCACGTTGCGATTTTCATTTCGCA
5230 TTGCGA-TTTCATTTCGCATTGCGATTCTCACGTTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTTCGCATTGCGATTCTCACGTTGCGATTTTCATTT-CGCA
5282 TTGCGATTTTCAT
1 TTGCGATTTTCAT
5295 GTTGGGATTT
Statistics
Matches: 208, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
51 43 0.21
52 120 0.58
53 8 0.04
54 4 0.02
55 6 0.03
57 27 0.13
ACGTcount: A:0.15, C:0.21, G:0.17, T:0.47
Consensus pattern (52 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCACGTTGCGATTTTCATTTCGCA
Found at i:5330 original size:142 final size:138
Alignment explanation
Indices: 4985--5322 Score: 506
Period size: 142 Copynumber: 2.4 Consensus size: 138
4975 AAAATCGCAA
*
4985 TGCG-TTTATAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCAT
1 TGCGATTT-TAATTTCGCATTGCGATTTTCT-GTTGCGATTTTCATTTCGCATTGCGATTTTCAT
*
5049 TTCGCATTGCGATTCTTTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGAT
64 TTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGAT
*
5114 TTTCATTTCGTAT
129 TCTCA--TCG-AT
5127 TGCGATTTTAATTTCGCATTGCGATTATGTCTGTT-CGATTTTCATTTCGCATTGCGATTTTCAT
1 TGCGATTTTAATTTCGCATTGCGATT-T-TCTGTTGCGATTTTCATTTCGCATTGCGATTTTCAT
5191 TTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGA-TTTCATTTCGCATTGCGAT
64 TTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGAT
5255 TCTCA-CG-T
129 TCTCATCGAT
* * *
5263 TGCGATTTTCATTTCCGCATTGCGATTTTCATGTTGGGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTAATTT-CGCATTGCGATTTTC-TGTTGCGATTTTCATTTCGCATTGCGATT
5323 GTATTTTCCG
Statistics
Matches: 184, Mismatches: 6, Indels: 17
0.89 0.03 0.08
Matches are distributed among these distances:
135 2 0.01
136 19 0.10
137 34 0.18
138 2 0.01
141 23 0.12
142 95 0.52
143 6 0.03
144 3 0.02
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (138 bp):
TGCGATTTTAATTTCGCATTGCGATTTTCTGTTGCGATTTTCATTTCGCATTGCGATTTTCATTT
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTC
TCATCGAT
Found at i:7642 original size:12 final size:12
Alignment explanation
Indices: 7625--7649 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7615 TCTTCGGGGA
7625 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7637 CTTTTTCTTCTT
1 CTTTTTCTTCTT
7649 C
1 C
7650 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:7858 original size:24 final size:24
Alignment explanation
Indices: 7824--7870 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7814 CTGAAACATC
7824 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
7848 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
7871 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:8571 original size:20 final size:20
Alignment explanation
Indices: 8543--8911 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
8533 AAATTTCAGT
* * * *
8543 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
8563 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
* * *
8583 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATACGC
*
8603 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
8623 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
8643 GTTGCGATTTACGGATTA-TC
1 GTTGCGATTTACGGA-TACGC
8663 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
8683 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
8703 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
8723 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
*
8743 GTTGCGGTTTACGGATACGC
1 GTTGCGATTTACGGATACGC
8763 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
*
8783 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATACGC
* **
8803 ATTGCGATTTACCCATACGC
1 GTTGCGATTTACGGATACGC
*
8823 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATACGC
8843 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATACGC
* *
8863 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATACGC
* ** *
8883 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATACGC
8903 GTTGCGATT
1 GTTGCGATT
8912 ATGGAAAATC
Statistics
Matches: 309, Mismatches: 32, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.02
20 299 0.97
21 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.35
Consensus pattern (20 bp):
GTTGCGATTTACGGATACGC
Found at i:14348 original size:34 final size:34
Alignment explanation
Indices: 14305--14413 Score: 182
Period size: 34 Copynumber: 3.2 Consensus size: 34
14295 TAATTAATGC
*
14305 ATTTGAAGAATTAACGATTGAATGATTAAGAATAA
1 ATTT-AAGAATTAACGATCGAATGATTAAGAATAA
14340 ATTTAAGAATTAACGATCGAATGATTAAGAATAA
1 ATTTAAGAATTAACGATCGAATGATTAAGAATAA
* *
14374 ATTTAAGAATTAACAATCGAATGATTAATAATAA
1 ATTTAAGAATTAACGATCGAATGATTAAGAATAA
14408 ATTTAA
1 ATTTAA
14414 TGTTTTATTT
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
34 67 0.94
35 4 0.06
ACGTcount: A:0.50, C:0.05, G:0.13, T:0.32
Consensus pattern (34 bp):
ATTTAAGAATTAACGATCGAATGATTAAGAATAA
Found at i:16499 original size:22 final size:21
Alignment explanation
Indices: 16472--16513 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
16462 TACATTATTA
*
16472 ATATAATAATGTTTCTATAAAT
1 ATATAATAAT-TTTATATAAAT
16494 ATATAATAATTTTATATAAA
1 ATATAATAATTTTATATAAA
16514 GCTATAATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
ATATAATAATTTTATATAAAT
Found at i:16519 original size:21 final size:22
Alignment explanation
Indices: 16472--16521 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
16462 TACATTATTA
* *
16472 ATATAATAATGTTTCTATAAAT
1 ATATAATAATGTTTATATAAAG
16494 ATATAATAAT-TTTATATAAAG
1 ATATAATAATGTTTATATAAAG
*
16515 CTATAAT
1 ATATAAT
16522 GCACAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (22 bp):
ATATAATAATGTTTATATAAAG
Found at i:28902 original size:14 final size:14
Alignment explanation
Indices: 28885--28930 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
28875 AATGAACATA
28885 AACGAACATAACCG
1 AACGAACATAACCG
28899 AACGAACATAACCG
1 AACGAACATAACCG
*
28913 TACGAACATAACCG
1 AACGAACATAACCG
28927 AACG
1 AACG
28931 TTCACGAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.48, C:0.28, G:0.15, T:0.09
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:32324 original size:22 final size:23
Alignment explanation
Indices: 32297--32350 Score: 67
Period size: 22 Copynumber: 2.4 Consensus size: 23
32287 AAGCACATTT
32297 TGAAAATATATGTTC-TATTTGAG
1 TGAAAATATAT-TTCATATTTGAG
*
32320 -GAAAAAATATTTCATATTTGAG
1 TGAAAATATATTTCATATTTGAG
*
32342 TTAAAATAT
1 TGAAAATAT
32351 CCGTAAGCCC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 3 0.12
22 17 0.65
23 6 0.23
ACGTcount: A:0.43, C:0.04, G:0.13, T:0.41
Consensus pattern (23 bp):
TGAAAATATATTTCATATTTGAG
Found at i:37372 original size:14 final size:14
Alignment explanation
Indices: 37353--37382 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
37343 CATAAGTTGA
*
37353 TTTTAATGTATATG
1 TTTTAATATATATG
37367 TTTTAATATATATG
1 TTTTAATATATATG
37381 TT
1 TT
37383 AATGATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.10, T:0.60
Consensus pattern (14 bp):
TTTTAATATATATG
Found at i:37559 original size:33 final size:34
Alignment explanation
Indices: 37498--37597 Score: 139
Period size: 33 Copynumber: 3.0 Consensus size: 34
37488 AAATTTAATG
*
37498 TTAAATTTCGAATACTATAATTTATATTTTAAAT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
* * * *
37532 TTAAATTT-GAATAATATTATTTTTATTTTTATT
1 TTAAATTTCGAATAATATAATTTATATTTTAAAT
*
37565 TTAAATTTCGAATAATATAATTTGTATTTTAAA
1 TTAAATTTCGAATAATATAATTTATATTTTAAA
37598 AACATTTATC
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
33 28 0.50
34 28 0.50
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (34 bp):
TTAAATTTCGAATAATATAATTTATATTTTAAAT
Found at i:38204 original size:21 final size:21
Alignment explanation
Indices: 38116--38209 Score: 129
Period size: 21 Copynumber: 4.5 Consensus size: 21
38106 TATGGTATAA
*
38116 AACCCTGCGGGCTAGGCATGT
1 AACCCTGCGGGCTAGGAATGT
*
38137 AA-CCTGGCGGGCTAGGCATGT
1 AACCCT-GCGGGCTAGGAATGT
38158 AA-CCTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTAGGAATGT
*
38179 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTAGGAATGT
38200 AACCCTGCGG
1 AACCCTGCGG
38210 AGATGACATA
Statistics
Matches: 69, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
20 3 0.04
21 63 0.91
22 3 0.04
ACGTcount: A:0.20, C:0.27, G:0.35, T:0.18
Consensus pattern (21 bp):
AACCCTGCGGGCTAGGAATGT
Found at i:40043 original size:19 final size:18
Alignment explanation
Indices: 39997--40043 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
39987 ATAATTATAT
39997 AAATATTAT-TTTAATAA
1 AAATATTATATTTAATAA
* *
40014 AAAAATAATATTTACATAA
1 AAATATTATATTTA-ATAA
*
40033 ATATATTATAT
1 AAATATTATAT
40044 AAAAATAATA
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 7 0.30
18 4 0.17
19 12 0.52
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATATTATATTTAATAA
Found at i:40060 original size:34 final size:35
Alignment explanation
Indices: 39978--40061 Score: 102
Period size: 34 Copynumber: 2.4 Consensus size: 35
39968 TAATAATTCT
* * *
39978 AAATAAATAATAATTATATAAATATTATTTTAATAA
1 AAAT-AATAATATTTACATAAATATTATTATAATAA
40014 AAA-AATAATATTTACATAAATA-TATTAT-ATAA
1 AAATAATAATATTTACATAAATATTATTATAATAA
40046 AAATAATAACTATTTA
1 AAATAATAA-TATTTA
40062 AAAAATACTA
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
32 7 0.16
33 10 0.23
34 23 0.53
36 3 0.07
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.39
Consensus pattern (35 bp):
AAATAATAATATTTACATAAATATTATTATAATAA
Found at i:65426 original size:106 final size:106
Alignment explanation
Indices: 65298--66597 Score: 2117
Period size: 106 Copynumber: 12.3 Consensus size: 106
65288 CTCGAGAGTA
* * * * * * *
65298 AATTTCAACTTCTCAACGAAGGATCTT-GAATCCAAGACAACACAAGCTCAACTTCATGACGAAG
1 AATTTCAACTTCACAACGAAGGATATTGGACT-CGAGACAACGCAAGTTCAACTTCACGACGAAG
* * * * * *
65362 GGGCGGCTGATTGTCAACAAACAACTTCTCAATCTCAGAGTC
65 GGACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
*
65404 AATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
* * *
65469 GACCGCTGGTTGTCAACGAAC-ATTTCTCGATTTCAGAGTC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
*
65509 AATTTCAACTTCACAACGAAGGATATTGGACTCTAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
65574 GA-CGCTGGTTGTCAACAAAC-ATTTCTCGATTTCAGAGTC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
*
65613 AATTTCAACTTCACAACGAAGGATATTGGACTC-AGACAACGTAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
*
65677 GACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
65718 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
65783 GACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
* * *
65824 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
65889 GACCGCCGGTTGTCAACAAACAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
65930 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
* *
65995 GACCGCTGGTTGTCAACAAACAATTTCCCAATTTCGGAGCC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
* *
66036 AATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACGTAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
*
66101 GACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
*
66142 AATTTCAACTTCACAACGAAAGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
66207 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
66248 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
66313 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
66354 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
* * *
66419 GACCGCTTGTTGTCAACAAACAACTTCCCAATTTCAGAGCC
66 GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
* * *
66460 AATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACAACGAAGG
1 AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
* * * *
66525 GA-CGACTGGTTGTCAACAAACAATTTCCCAGTTCCAAAGCC
66 GACCG-CTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
* *
66566 AATTTCAACTTCACGACGGAGGATATTGGACT
1 AATTTCAACTTCACAACGAAGGATATTGGACT
66598 TGGAACAATA
Statistics
Matches: 1128, Mismatches: 61, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
103 32 0.03
104 87 0.08
105 134 0.12
106 872 0.77
107 3 0.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.23
Consensus pattern (106 bp):
AATTTCAACTTCACAACGAAGGATATTGGACTCGAGACAACGCAAGTTCAACTTCACGACGAAGG
GACCGCTGGTTGTCAACAAACAATTTCTCAATTTCAGAGCC
Found at i:74038 original size:25 final size:25
Alignment explanation
Indices: 74007--74058 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
73997 GTTAGATTCT
74007 TTTAAAGAAACCATTAGATTTGAGG
1 TTTAAAGAAACCATTAGATTTGAGG
74032 TTTAAAGAAACCATTAGATTTGAGG
1 TTTAAAGAAACCATTAGATTTGAGG
74057 TT
1 TT
74059 CAGCTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (25 bp):
TTTAAAGAAACCATTAGATTTGAGG
Done.